Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0316 and Rru_A0317 are separated by 2 nucleotides Rru_A0317 and Rru_A0318 are separated by 8 nucleotides Rru_A0318 and Rru_A0319 overlap by 8 nucleotides Rru_A0319 and Rru_A0320 are separated by 13 nucleotides
Rru_A0316: Rru_A0316 - NADH-ubiquinone oxidoreductase (NCBI), at 385,692 to 387,377
_A0316
Rru_A0317: Rru_A0317 - Respiratory-chain NADH dehydrogenase, subunit 1 (NCBI), at 387,380 to 388,282
_A0317
Rru_A0318: Rru_A0318 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 388,291 to 388,818
_A0318
Rru_A0319: Rru_A0319 - NADH-ubiquinone oxidoreductase, chain 4L (NCBI), at 388,811 to 389,476
_A0319
Rru_A0320: Rru_A0320 - NADH dehydrogenase (quinone) (NCBI), at 389,490 to 391,085
_A0320
Position (kb) 388
389 Strain fitness (log2 ratio) -1
0
1 at 387.327 kb on + strand at 387.327 kb on + strand at 387.327 kb on + strand at 387.375 kb on + strand at 387.509 kb on + strand, within Rru_A0317 at 387.509 kb on + strand, within Rru_A0317 at 387.510 kb on - strand, within Rru_A0317 at 387.680 kb on + strand, within Rru_A0317 at 387.680 kb on + strand, within Rru_A0317 at 387.680 kb on + strand, within Rru_A0317 at 387.680 kb on + strand, within Rru_A0317 at 387.680 kb on + strand, within Rru_A0317 at 387.681 kb on - strand, within Rru_A0317 at 387.681 kb on - strand, within Rru_A0317 at 387.681 kb on - strand, within Rru_A0317 at 387.681 kb on - strand, within Rru_A0317 at 387.681 kb on - strand, within Rru_A0317 at 387.681 kb on - strand, within Rru_A0317 at 387.715 kb on - strand, within Rru_A0317 at 387.741 kb on - strand, within Rru_A0317 at 387.741 kb on - strand, within Rru_A0317 at 387.741 kb on - strand, within Rru_A0317 at 387.746 kb on + strand, within Rru_A0317 at 387.746 kb on + strand, within Rru_A0317 at 387.777 kb on + strand, within Rru_A0317 at 387.778 kb on - strand, within Rru_A0317 at 387.867 kb on - strand, within Rru_A0317 at 387.867 kb on - strand, within Rru_A0317 at 388.166 kb on - strand, within Rru_A0317 at 388.352 kb on - strand, within Rru_A0318 at 388.832 kb on + strand at 388.907 kb on + strand, within Rru_A0319 at 388.908 kb on - strand, within Rru_A0319 at 388.908 kb on - strand, within Rru_A0319 at 388.980 kb on - strand, within Rru_A0319 at 388.983 kb on - strand, within Rru_A0319 at 388.983 kb on - strand, within Rru_A0319 at 389.042 kb on + strand, within Rru_A0319 at 389.042 kb on + strand, within Rru_A0319 at 389.043 kb on - strand, within Rru_A0319 at 389.244 kb on - strand, within Rru_A0319 at 389.244 kb on - strand, within Rru_A0319 at 389.244 kb on - strand, within Rru_A0319 at 389.244 kb on - strand, within Rru_A0319 at 389.244 kb on - strand, within Rru_A0319 at 389.405 kb on + strand, within Rru_A0319 at 389.405 kb on + strand, within Rru_A0319 at 389.405 kb on + strand, within Rru_A0319 at 389.405 kb on + strand, within Rru_A0319 at 389.406 kb on - strand, within Rru_A0319 at 389.406 kb on - strand, within Rru_A0319 at 389.406 kb on - strand, within Rru_A0319 at 389.455 kb on + strand at 389.455 kb on + strand at 389.506 kb on + strand at 389.507 kb on - strand at 389.509 kb on + strand at 389.510 kb on - strand at 389.510 kb on - strand at 389.519 kb on - strand at 389.519 kb on - strand at 389.553 kb on + strand at 389.554 kb on - strand at 389.799 kb on + strand, within Rru_A0320 at 389.800 kb on - strand, within Rru_A0320
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 387,327 + -0.0 387,327 + -0.4 387,327 + +0.7 387,375 + -1.1 387,509 + Rru_A0317 0.14 +0.5 387,509 + Rru_A0317 0.14 +0.5 387,510 - Rru_A0317 0.14 -0.1 387,680 + Rru_A0317 0.33 -0.4 387,680 + Rru_A0317 0.33 +0.1 387,680 + Rru_A0317 0.33 -0.0 387,680 + Rru_A0317 0.33 -0.0 387,680 + Rru_A0317 0.33 -0.0 387,681 - Rru_A0317 0.33 -0.8 387,681 - Rru_A0317 0.33 -0.2 387,681 - Rru_A0317 0.33 +1.0 387,681 - Rru_A0317 0.33 +0.4 387,681 - Rru_A0317 0.33 -1.0 387,681 - Rru_A0317 0.33 -0.0 387,715 - Rru_A0317 0.37 +0.8 387,741 - Rru_A0317 0.40 +0.1 387,741 - Rru_A0317 0.40 +0.6 387,741 - Rru_A0317 0.40 -0.0 387,746 + Rru_A0317 0.41 -0.0 387,746 + Rru_A0317 0.41 -0.0 387,777 + Rru_A0317 0.44 +1.2 387,778 - Rru_A0317 0.44 +0.5 387,867 - Rru_A0317 0.54 +0.6 387,867 - Rru_A0317 0.54 +0.8 388,166 - Rru_A0317 0.87 -1.0 388,352 - Rru_A0318 0.12 +0.1 388,832 + -0.0 388,907 + Rru_A0319 0.14 -0.0 388,908 - Rru_A0319 0.15 -0.1 388,908 - Rru_A0319 0.15 +0.6 388,980 - Rru_A0319 0.25 -0.0 388,983 - Rru_A0319 0.26 +0.5 388,983 - Rru_A0319 0.26 -1.6 389,042 + Rru_A0319 0.35 +0.7 389,042 + Rru_A0319 0.35 -0.0 389,043 - Rru_A0319 0.35 +0.7 389,244 - Rru_A0319 0.65 +0.3 389,244 - Rru_A0319 0.65 -0.0 389,244 - Rru_A0319 0.65 +1.1 389,244 - Rru_A0319 0.65 -0.0 389,244 - Rru_A0319 0.65 +0.7 389,405 + Rru_A0319 0.89 +0.1 389,405 + Rru_A0319 0.89 -0.4 389,405 + Rru_A0319 0.89 -0.0 389,405 + Rru_A0319 0.89 -0.0 389,406 - Rru_A0319 0.89 -0.0 389,406 - Rru_A0319 0.89 -0.0 389,406 - Rru_A0319 0.89 +0.4 389,455 + -1.2 389,455 + +0.9 389,506 + -0.0 389,507 - +1.2 389,509 + -0.0 389,510 - -0.0 389,510 - -0.0 389,519 - -0.0 389,519 - +0.1 389,553 + -0.0 389,554 - -0.3 389,799 + Rru_A0320 0.19 +0.1 389,800 - Rru_A0320 0.19 +0.5
Or see this region's nucleotide sequence