Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0314

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0313 and Rru_A0314 overlap by 8 nucleotidesRru_A0314 and Rru_A0315 are separated by 7 nucleotides Rru_A0313: Rru_A0313 - Aldehyde ferredoxin oxidoreductase (NCBI), at 380,853 to 382,136 _A0313 Rru_A0314: Rru_A0314 - NADH dehydrogenase (quinone) (NCBI), at 382,129 to 383,646 _A0314 Rru_A0315: Rru_A0315 - NADH dehydrogenase (quinone) (NCBI), at 383,654 to 385,678 _A0315 Position (kb) 382 383 384Strain fitness (log2 ratio) -2 -1 0 1at 381.162 kb on + strand, within Rru_A0313at 381.162 kb on + strand, within Rru_A0313at 381.162 kb on + strand, within Rru_A0313at 381.213 kb on + strand, within Rru_A0313at 381.213 kb on + strand, within Rru_A0313at 381.213 kb on + strand, within Rru_A0313at 381.214 kb on - strand, within Rru_A0313at 381.214 kb on - strand, within Rru_A0313at 381.214 kb on - strand, within Rru_A0313at 381.963 kb on - strand, within Rru_A0313at 381.963 kb on - strand, within Rru_A0313at 381.963 kb on - strand, within Rru_A0313at 381.965 kb on - strand, within Rru_A0313at 381.965 kb on - strand, within Rru_A0313at 382.477 kb on + strand, within Rru_A0314at 382.489 kb on + strand, within Rru_A0314at 382.489 kb on + strand, within Rru_A0314at 382.489 kb on + strand, within Rru_A0314at 382.490 kb on - strand, within Rru_A0314at 382.490 kb on - strand, within Rru_A0314at 382.541 kb on - strand, within Rru_A0314at 382.543 kb on + strand, within Rru_A0314at 382.543 kb on + strand, within Rru_A0314at 382.543 kb on + strand, within Rru_A0314at 382.543 kb on + strand, within Rru_A0314at 382.543 kb on + strand, within Rru_A0314at 382.544 kb on - strand, within Rru_A0314at 382.544 kb on - strand, within Rru_A0314at 382.600 kb on + strand, within Rru_A0314at 382.600 kb on + strand, within Rru_A0314at 382.601 kb on - strand, within Rru_A0314at 382.663 kb on + strand, within Rru_A0314at 382.663 kb on + strand, within Rru_A0314at 382.663 kb on + strand, within Rru_A0314at 382.663 kb on + strand, within Rru_A0314at 382.663 kb on + strand, within Rru_A0314at 382.663 kb on + strand, within Rru_A0314at 382.663 kb on + strand, within Rru_A0314at 382.664 kb on - strand, within Rru_A0314at 382.664 kb on - strand, within Rru_A0314at 382.693 kb on + strand, within Rru_A0314at 382.694 kb on - strand, within Rru_A0314at 382.694 kb on - strand, within Rru_A0314at 382.695 kb on + strand, within Rru_A0314at 382.696 kb on - strand, within Rru_A0314at 382.696 kb on - strand, within Rru_A0314at 382.756 kb on + strand, within Rru_A0314at 382.756 kb on + strand, within Rru_A0314at 382.756 kb on + strand, within Rru_A0314at 382.757 kb on - strand, within Rru_A0314at 382.757 kb on - strand, within Rru_A0314at 382.757 kb on - strand, within Rru_A0314at 382.757 kb on - strand, within Rru_A0314at 382.757 kb on - strand, within Rru_A0314at 382.757 kb on - strand, within Rru_A0314at 382.924 kb on + strand, within Rru_A0314at 382.924 kb on + strand, within Rru_A0314at 382.925 kb on - strand, within Rru_A0314at 382.961 kb on - strand, within Rru_A0314at 382.961 kb on - strand, within Rru_A0314at 383.065 kb on + strand, within Rru_A0314at 383.125 kb on + strand, within Rru_A0314at 383.125 kb on + strand, within Rru_A0314at 383.126 kb on - strand, within Rru_A0314at 383.126 kb on - strand, within Rru_A0314at 383.252 kb on - strand, within Rru_A0314at 383.252 kb on - strand, within Rru_A0314at 383.383 kb on + strand, within Rru_A0314at 383.384 kb on - strand, within Rru_A0314at 383.384 kb on - strand, within Rru_A0314at 383.384 kb on - strand, within Rru_A0314at 383.821 kb on - strandat 383.951 kb on + strand, within Rru_A0315at 383.952 kb on - strand, within Rru_A0315at 383.952 kb on - strand, within Rru_A0315at 383.963 kb on + strand, within Rru_A0315at 383.963 kb on + strand, within Rru_A0315at 383.964 kb on - strand, within Rru_A0315at 383.964 kb on - strand, within Rru_A0315at 383.964 kb on - strand, within Rru_A0315at 383.964 kb on - strand, within Rru_A0315at 384.000 kb on - strand, within Rru_A0315at 384.002 kb on + strand, within Rru_A0315at 384.002 kb on + strand, within Rru_A0315at 384.002 kb on + strand, within Rru_A0315at 384.003 kb on - strand, within Rru_A0315at 384.003 kb on - strand, within Rru_A0315at 384.003 kb on - strand, within Rru_A0315at 384.003 kb on - strand, within Rru_A0315at 384.003 kb on - strand, within Rru_A0315at 384.161 kb on + strand, within Rru_A0315at 384.162 kb on - strand, within Rru_A0315at 384.162 kb on - strand, within Rru_A0315at 384.162 kb on - strand, within Rru_A0315at 384.300 kb on - strand, within Rru_A0315at 384.310 kb on + strand, within Rru_A0315at 384.310 kb on + strand, within Rru_A0315at 384.443 kb on + strand, within Rru_A0315at 384.443 kb on + strand, within Rru_A0315at 384.444 kb on - strand, within Rru_A0315at 384.444 kb on - strand, within Rru_A0315at 384.444 kb on - strand, within Rru_A0315at 384.444 kb on - strand, within Rru_A0315at 384.617 kb on + strand, within Rru_A0315at 384.617 kb on + strand, within Rru_A0315at 384.618 kb on - strand, within Rru_A0315at 384.618 kb on - strand, within Rru_A0315at 384.618 kb on - strand, within Rru_A0315at 384.618 kb on - strand, within Rru_A0315at 384.618 kb on - strand, within Rru_A0315at 384.618 kb on - strand, within Rru_A0315

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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381,162 + Rru_A0313 0.24 -0.0
381,162 + Rru_A0313 0.24 -0.5
381,162 + Rru_A0313 0.24 -0.0
381,213 + Rru_A0313 0.28 -0.0
381,213 + Rru_A0313 0.28 -0.7
381,213 + Rru_A0313 0.28 -0.0
381,214 - Rru_A0313 0.28 -0.0
381,214 - Rru_A0313 0.28 -1.0
381,214 - Rru_A0313 0.28 +0.8
381,963 - Rru_A0313 0.86 +1.3
381,963 - Rru_A0313 0.86 +1.3
381,963 - Rru_A0313 0.86 +0.6
381,965 - Rru_A0313 0.87 +1.1
381,965 - Rru_A0313 0.87 -0.0
382,477 + Rru_A0314 0.23 -0.0
382,489 + Rru_A0314 0.24 -0.0
382,489 + Rru_A0314 0.24 -0.4
382,489 + Rru_A0314 0.24 -0.0
382,490 - Rru_A0314 0.24 -0.0
382,490 - Rru_A0314 0.24 -0.0
382,541 - Rru_A0314 0.27 -0.0
382,543 + Rru_A0314 0.27 -0.0
382,543 + Rru_A0314 0.27 -0.5
382,543 + Rru_A0314 0.27 +0.4
382,543 + Rru_A0314 0.27 -1.2
382,543 + Rru_A0314 0.27 -0.3
382,544 - Rru_A0314 0.27 +0.7
382,544 - Rru_A0314 0.27 +0.4
382,600 + Rru_A0314 0.31 -0.3
382,600 + Rru_A0314 0.31 -0.0
382,601 - Rru_A0314 0.31 -0.2
382,663 + Rru_A0314 0.35 -0.3
382,663 + Rru_A0314 0.35 -2.2
382,663 + Rru_A0314 0.35 -0.0
382,663 + Rru_A0314 0.35 -0.0
382,663 + Rru_A0314 0.35 -0.9
382,663 + Rru_A0314 0.35 -0.0
382,663 + Rru_A0314 0.35 -0.5
382,664 - Rru_A0314 0.35 +0.9
382,664 - Rru_A0314 0.35 -0.0
382,693 + Rru_A0314 0.37 -0.4
382,694 - Rru_A0314 0.37 -0.0
382,694 - Rru_A0314 0.37 +1.0
382,695 + Rru_A0314 0.37 +0.9
382,696 - Rru_A0314 0.37 -0.0
382,696 - Rru_A0314 0.37 +0.0
382,756 + Rru_A0314 0.41 -0.0
382,756 + Rru_A0314 0.41 +0.5
382,756 + Rru_A0314 0.41 -0.0
382,757 - Rru_A0314 0.41 +0.4
382,757 - Rru_A0314 0.41 +0.8
382,757 - Rru_A0314 0.41 -1.0
382,757 - Rru_A0314 0.41 -0.0
382,757 - Rru_A0314 0.41 +0.7
382,757 - Rru_A0314 0.41 -0.0
382,924 + Rru_A0314 0.52 -0.0
382,924 + Rru_A0314 0.52 -0.0
382,925 - Rru_A0314 0.52 -0.0
382,961 - Rru_A0314 0.55 -0.4
382,961 - Rru_A0314 0.55 -0.0
383,065 + Rru_A0314 0.62 -0.0
383,125 + Rru_A0314 0.66 -0.7
383,125 + Rru_A0314 0.66 -0.0
383,126 - Rru_A0314 0.66 -0.4
383,126 - Rru_A0314 0.66 +0.3
383,252 - Rru_A0314 0.74 -0.0
383,252 - Rru_A0314 0.74 -0.0
383,383 + Rru_A0314 0.83 -0.4
383,384 - Rru_A0314 0.83 -0.0
383,384 - Rru_A0314 0.83 -1.0
383,384 - Rru_A0314 0.83 -0.3
383,821 - -1.0
383,951 + Rru_A0315 0.15 -0.0
383,952 - Rru_A0315 0.15 +0.2
383,952 - Rru_A0315 0.15 +0.5
383,963 + Rru_A0315 0.15 -0.0
383,963 + Rru_A0315 0.15 -0.0
383,964 - Rru_A0315 0.15 -0.0
383,964 - Rru_A0315 0.15 +0.5
383,964 - Rru_A0315 0.15 +0.4
383,964 - Rru_A0315 0.15 +0.4
384,000 - Rru_A0315 0.17 +0.3
384,002 + Rru_A0315 0.17 -0.0
384,002 + Rru_A0315 0.17 +0.7
384,002 + Rru_A0315 0.17 -1.1
384,003 - Rru_A0315 0.17 -0.0
384,003 - Rru_A0315 0.17 -0.1
384,003 - Rru_A0315 0.17 -0.0
384,003 - Rru_A0315 0.17 +0.8
384,003 - Rru_A0315 0.17 +0.7
384,161 + Rru_A0315 0.25 -0.0
384,162 - Rru_A0315 0.25 -0.4
384,162 - Rru_A0315 0.25 -0.0
384,162 - Rru_A0315 0.25 +1.6
384,300 - Rru_A0315 0.32 +0.4
384,310 + Rru_A0315 0.32 -0.7
384,310 + Rru_A0315 0.32 -0.0
384,443 + Rru_A0315 0.39 +0.5
384,443 + Rru_A0315 0.39 -0.0
384,444 - Rru_A0315 0.39 -0.1
384,444 - Rru_A0315 0.39 -0.0
384,444 - Rru_A0315 0.39 +0.1
384,444 - Rru_A0315 0.39 -0.0
384,617 + Rru_A0315 0.48 -0.1
384,617 + Rru_A0315 0.48 -0.0
384,618 - Rru_A0315 0.48 -0.0
384,618 - Rru_A0315 0.48 -0.0
384,618 - Rru_A0315 0.48 +0.6
384,618 - Rru_A0315 0.48 -0.0
384,618 - Rru_A0315 0.48 +0.6
384,618 - Rru_A0315 0.48 -0.1

Or see this region's nucleotide sequence