Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0310 and Rru_A0311 are separated by 78 nucleotides Rru_A0311 and Rru_A0312 are separated by 160 nucleotides Rru_A0312 and Rru_A0313 overlap by 1 nucleotides
Rru_A0310: Rru_A0310 - Ferredoxin hydrogenase (NCBI), at 377,880 to 379,268
_A0310
Rru_A0311: Rru_A0311 - Formate/nitrite transporter (NCBI), at 379,347 to 380,279
_A0311
Rru_A0312: Rru_A0312 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 380,440 to 380,853
_A0312
Rru_A0313: Rru_A0313 - Aldehyde ferredoxin oxidoreductase (NCBI), at 380,853 to 382,136
_A0313
Position (kb) 379
380
381 Strain fitness (log2 ratio) -2
-1
0
1
2 at 378.477 kb on + strand, within Rru_A0310 at 378.522 kb on + strand, within Rru_A0310 at 378.522 kb on + strand, within Rru_A0310 at 378.523 kb on - strand, within Rru_A0310 at 378.523 kb on - strand, within Rru_A0310 at 378.523 kb on - strand, within Rru_A0310 at 378.532 kb on - strand, within Rru_A0310 at 378.532 kb on - strand, within Rru_A0310 at 378.567 kb on - strand, within Rru_A0310 at 378.602 kb on + strand, within Rru_A0310 at 378.656 kb on + strand, within Rru_A0310 at 378.657 kb on - strand, within Rru_A0310 at 378.777 kb on + strand, within Rru_A0310 at 378.778 kb on - strand, within Rru_A0310 at 378.778 kb on - strand, within Rru_A0310 at 378.778 kb on - strand, within Rru_A0310 at 378.778 kb on - strand, within Rru_A0310 at 378.778 kb on - strand, within Rru_A0310 at 378.915 kb on + strand, within Rru_A0310 at 379.183 kb on - strand at 379.192 kb on - strand at 379.242 kb on + strand at 379.266 kb on + strand at 379.267 kb on - strand at 379.326 kb on + strand at 379.327 kb on - strand at 379.327 kb on - strand at 379.353 kb on + strand at 379.356 kb on + strand at 379.356 kb on + strand at 379.356 kb on + strand at 379.356 kb on + strand at 379.357 kb on - strand at 379.357 kb on - strand at 379.357 kb on - strand at 379.357 kb on - strand at 379.357 kb on - strand at 379.395 kb on + strand at 379.396 kb on - strand at 379.764 kb on + strand, within Rru_A0311 at 379.764 kb on + strand, within Rru_A0311 at 379.764 kb on + strand, within Rru_A0311 at 379.765 kb on - strand, within Rru_A0311 at 379.765 kb on - strand, within Rru_A0311 at 379.765 kb on - strand, within Rru_A0311 at 379.765 kb on - strand, within Rru_A0311 at 379.765 kb on - strand, within Rru_A0311 at 379.803 kb on + strand, within Rru_A0311 at 379.804 kb on - strand, within Rru_A0311 at 379.804 kb on - strand, within Rru_A0311 at 379.870 kb on - strand, within Rru_A0311 at 379.870 kb on - strand, within Rru_A0311 at 380.385 kb on - strand at 381.162 kb on + strand, within Rru_A0313 at 381.162 kb on + strand, within Rru_A0313 at 381.162 kb on + strand, within Rru_A0313 at 381.213 kb on + strand, within Rru_A0313 at 381.213 kb on + strand, within Rru_A0313 at 381.213 kb on + strand, within Rru_A0313 at 381.214 kb on - strand, within Rru_A0313 at 381.214 kb on - strand, within Rru_A0313 at 381.214 kb on - strand, within Rru_A0313
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 378,477 + Rru_A0310 0.43 -0.2 378,522 + Rru_A0310 0.46 -0.1 378,522 + Rru_A0310 0.46 -0.0 378,523 - Rru_A0310 0.46 -1.3 378,523 - Rru_A0310 0.46 -0.0 378,523 - Rru_A0310 0.46 +0.5 378,532 - Rru_A0310 0.47 -0.0 378,532 - Rru_A0310 0.47 -0.0 378,567 - Rru_A0310 0.49 +0.3 378,602 + Rru_A0310 0.52 -0.0 378,656 + Rru_A0310 0.56 -0.0 378,657 - Rru_A0310 0.56 +0.5 378,777 + Rru_A0310 0.65 -0.0 378,778 - Rru_A0310 0.65 -1.0 378,778 - Rru_A0310 0.65 -0.0 378,778 - Rru_A0310 0.65 +0.5 378,778 - Rru_A0310 0.65 +1.4 378,778 - Rru_A0310 0.65 -1.6 378,915 + Rru_A0310 0.75 -1.6 379,183 - -0.0 379,192 - +0.6 379,242 + -0.0 379,266 + -0.0 379,267 - +1.8 379,326 + +1.0 379,327 - -1.0 379,327 - -0.0 379,353 + +0.7 379,356 + -0.4 379,356 + -0.0 379,356 + +0.1 379,356 + -0.3 379,357 - +1.1 379,357 - -0.0 379,357 - +1.0 379,357 - -0.0 379,357 - -0.0 379,395 + -0.0 379,396 - +1.3 379,764 + Rru_A0311 0.45 -0.1 379,764 + Rru_A0311 0.45 -0.0 379,764 + Rru_A0311 0.45 -2.3 379,765 - Rru_A0311 0.45 -0.0 379,765 - Rru_A0311 0.45 -0.0 379,765 - Rru_A0311 0.45 -0.0 379,765 - Rru_A0311 0.45 +0.5 379,765 - Rru_A0311 0.45 -0.3 379,803 + Rru_A0311 0.49 -0.0 379,804 - Rru_A0311 0.49 -0.0 379,804 - Rru_A0311 0.49 +1.0 379,870 - Rru_A0311 0.56 -0.2 379,870 - Rru_A0311 0.56 -0.0 380,385 - +0.7 381,162 + Rru_A0313 0.24 -0.0 381,162 + Rru_A0313 0.24 -0.5 381,162 + Rru_A0313 0.24 -0.0 381,213 + Rru_A0313 0.28 -0.0 381,213 + Rru_A0313 0.28 -0.7 381,213 + Rru_A0313 0.28 -0.0 381,214 - Rru_A0313 0.28 -0.0 381,214 - Rru_A0313 0.28 -1.0 381,214 - Rru_A0313 0.28 +0.8
Or see this region's nucleotide sequence