Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0295 and Rru_A0296 are separated by 298 nucleotides Rru_A0296 and Rru_AR0012 are separated by 224 nucleotides Rru_AR0012 and Rru_AR0013 are separated by 202 nucleotides Rru_AR0013 and Rru_A0297 are separated by 43 nucleotides
Rru_A0295: Rru_A0295 - 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI), at 360,898 to 362,253
_A0295
Rru_A0296: Rru_A0296 - hypothetical protein (NCBI), at 362,552 to 362,881
_A0296
Rru_AR0012: Rru_AR0012 - tRNA-Ala (NCBI), at 363,106 to 363,181
_AR0012
Rru_AR0013: Rru_AR0013 - tRNA-Ala (NCBI), at 363,384 to 363,459
_AR0013
Rru_A0297: Rru_A0297 - Putative esterase (NCBI), at 363,503 to 364,531
_A0297
Position (kb) 362
363 Strain fitness (log2 ratio) -1
0
1
2
3 at 362.405 kb on + strand at 362.405 kb on + strand at 362.406 kb on - strand at 362.406 kb on - strand at 362.423 kb on + strand at 362.424 kb on - strand at 362.456 kb on + strand at 362.456 kb on + strand at 362.457 kb on - strand at 362.544 kb on + strand at 362.544 kb on + strand at 362.545 kb on - strand at 362.609 kb on + strand, within Rru_A0296 at 362.610 kb on - strand, within Rru_A0296 at 362.788 kb on + strand, within Rru_A0296 at 362.788 kb on + strand, within Rru_A0296 at 362.880 kb on - strand at 362.880 kb on - strand at 362.880 kb on - strand at 362.974 kb on - strand at 363.291 kb on + strand at 363.392 kb on - strand, within Rru_AR0013 at 363.392 kb on - strand, within Rru_AR0013 at 363.504 kb on + strand at 363.708 kb on + strand, within Rru_A0297 at 363.708 kb on + strand, within Rru_A0297 at 363.709 kb on - strand, within Rru_A0297 at 363.763 kb on + strand, within Rru_A0297 at 363.763 kb on + strand, within Rru_A0297 at 363.763 kb on + strand, within Rru_A0297 at 363.764 kb on - strand, within Rru_A0297 at 363.764 kb on - strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 362,405 + -0.0 362,405 + -0.0 362,406 - +0.9 362,406 - -0.0 362,423 + -0.0 362,424 - -0.0 362,456 + +1.6 362,456 + -0.0 362,457 - -0.0 362,544 + -0.0 362,544 + -0.0 362,545 - -0.0 362,609 + Rru_A0296 0.17 -1.0 362,610 - Rru_A0296 0.18 -1.0 362,788 + Rru_A0296 0.72 -0.0 362,788 + Rru_A0296 0.72 -0.0 362,880 - +0.2 362,880 - -0.0 362,880 - -1.0 362,974 - -0.0 363,291 + +1.1 363,392 - Rru_AR0013 0.11 +0.5 363,392 - Rru_AR0013 0.11 +0.7 363,504 + +0.0 363,708 + Rru_A0297 0.20 +0.0 363,708 + Rru_A0297 0.20 -0.2 363,709 - Rru_A0297 0.20 +0.0 363,763 + Rru_A0297 0.25 +2.9 363,763 + Rru_A0297 0.25 +0.0 363,763 + Rru_A0297 0.25 +0.4 363,764 - Rru_A0297 0.25 +0.0 363,764 - Rru_A0297 0.25 +0.8 363,765 + Rru_A0297 0.25 +0.3 363,765 + Rru_A0297 0.25 -1.0 363,765 + Rru_A0297 0.25 +2.2 363,765 + Rru_A0297 0.25 +0.0 363,765 + Rru_A0297 0.25 -0.3 363,765 + Rru_A0297 0.25 +0.0 363,765 + Rru_A0297 0.25 -1.0 363,765 + Rru_A0297 0.25 +0.0 363,766 - Rru_A0297 0.26 +2.0 363,766 - Rru_A0297 0.26 +0.3 363,766 - Rru_A0297 0.26 +1.0 363,766 - Rru_A0297 0.26 +1.9 363,766 - Rru_A0297 0.26 +0.8 363,766 - Rru_A0297 0.26 +0.6 363,766 - Rru_A0297 0.26 +1.2 363,766 - Rru_A0297 0.26 +0.0 363,766 - Rru_A0297 0.26 +0.5 363,766 - Rru_A0297 0.26 +0.5
Or see this region's nucleotide sequence