Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0284

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0282 and Rru_A0283 are separated by 280 nucleotidesRru_A0283 and Rru_A0284 are separated by 33 nucleotidesRru_A0284 and Rru_A0285 are separated by 76 nucleotides Rru_A0282: Rru_A0282 - Protein of unknown function DUF204 (NCBI), at 346,930 to 347,511 _A0282 Rru_A0283: Rru_A0283 - hypothetical protein (NCBI), at 347,792 to 348,295 _A0283 Rru_A0284: Rru_A0284 - acetolactate synthase (NCBI), at 348,329 to 350,059 _A0284 Rru_A0285: Rru_A0285 - Aldehyde dehydrogenase (NCBI), at 350,136 to 351,656 _A0285 Position (kb) 348 349 350 351Strain fitness (log2 ratio) -2 -1 0 1at 347.387 kb on + strand, within Rru_A0282at 347.387 kb on + strand, within Rru_A0282at 347.535 kb on + strandat 347.536 kb on - strandat 347.716 kb on + strandat 347.716 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.891 kb on + strand, within Rru_A0283at 347.891 kb on + strand, within Rru_A0283at 347.891 kb on + strand, within Rru_A0283at 347.892 kb on - strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.213 kb on - strand, within Rru_A0283at 348.213 kb on - strand, within Rru_A0283at 348.213 kb on - strand, within Rru_A0283at 348.213 kb on - strand, within Rru_A0283at 348.273 kb on + strandat 348.273 kb on + strandat 348.274 kb on - strandat 348.349 kb on + strandat 348.406 kb on + strandat 348.461 kb on + strandat 348.461 kb on + strandat 348.461 kb on + strandat 348.461 kb on + strandat 348.462 kb on - strandat 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.564 kb on - strand, within Rru_A0284at 348.564 kb on - strand, within Rru_A0284at 348.564 kb on - strand, within Rru_A0284at 348.565 kb on + strand, within Rru_A0284at 348.566 kb on - strand, within Rru_A0284at 348.566 kb on - strand, within Rru_A0284at 349.139 kb on + strand, within Rru_A0284at 349.139 kb on + strand, within Rru_A0284at 349.140 kb on - strand, within Rru_A0284at 349.140 kb on - strand, within Rru_A0284at 349.140 kb on - strand, within Rru_A0284at 349.177 kb on + strand, within Rru_A0284at 349.250 kb on + strand, within Rru_A0284at 349.251 kb on - strand, within Rru_A0284at 349.251 kb on - strand, within Rru_A0284at 349.253 kb on - strand, within Rru_A0284at 349.253 kb on - strand, within Rru_A0284at 349.294 kb on + strand, within Rru_A0284at 349.294 kb on + strand, within Rru_A0284at 349.295 kb on - strand, within Rru_A0284at 349.295 kb on - strand, within Rru_A0284at 349.328 kb on + strand, within Rru_A0284at 349.328 kb on + strand, within Rru_A0284at 349.329 kb on - strand, within Rru_A0284at 349.329 kb on - strand, within Rru_A0284at 349.436 kb on + strand, within Rru_A0284at 349.436 kb on + strand, within Rru_A0284at 349.436 kb on + strand, within Rru_A0284at 349.436 kb on + strand, within Rru_A0284at 349.437 kb on - strand, within Rru_A0284at 349.437 kb on - strand, within Rru_A0284at 349.437 kb on - strand, within Rru_A0284at 349.437 kb on - strand, within Rru_A0284at 349.437 kb on - strand, within Rru_A0284at 349.437 kb on - strand, within Rru_A0284at 349.437 kb on - strand, within Rru_A0284at 349.553 kb on + strand, within Rru_A0284at 349.553 kb on + strand, within Rru_A0284at 349.553 kb on + strand, within Rru_A0284at 349.554 kb on - strand, within Rru_A0284at 349.790 kb on + strand, within Rru_A0284at 349.790 kb on + strand, within Rru_A0284at 349.790 kb on + strand, within Rru_A0284at 349.790 kb on + strand, within Rru_A0284at 349.790 kb on + strand, within Rru_A0284at 349.790 kb on + strand, within Rru_A0284at 349.790 kb on + strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.791 kb on - strand, within Rru_A0284at 349.886 kb on + strand, within Rru_A0284at 349.887 kb on - strandat 350.148 kb on + strandat 350.148 kb on + strandat 350.148 kb on + strandat 350.148 kb on + strandat 350.394 kb on - strand, within Rru_A0285at 350.394 kb on - strand, within Rru_A0285at 350.477 kb on + strand, within Rru_A0285at 350.478 kb on - strand, within Rru_A0285at 350.478 kb on - strand, within Rru_A0285at 350.478 kb on - strand, within Rru_A0285at 350.478 kb on - strand, within Rru_A0285at 350.927 kb on + strand, within Rru_A0285at 350.928 kb on - strand, within Rru_A0285

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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347,387 + Rru_A0282 0.79 -0.2
347,387 + Rru_A0282 0.79 +0.8
347,535 + -0.0
347,536 - -0.0
347,716 + +0.4
347,716 + -0.0
347,718 + +0.5
347,718 + +0.1
347,718 + -0.6
347,718 + -1.0
347,718 + +1.1
347,718 + -0.0
347,718 + -0.0
347,718 + +0.9
347,718 + +0.4
347,719 - +1.0
347,719 - +0.5
347,719 - +0.2
347,719 - +0.2
347,719 - -0.1
347,719 - +0.3
347,719 - -0.0
347,719 - +1.5
347,719 - -0.0
347,719 - -0.0
347,719 - +0.6
347,719 - +0.3
347,891 + Rru_A0283 0.20 +0.1
347,891 + Rru_A0283 0.20 -0.1
347,891 + Rru_A0283 0.20 +0.6
347,892 - Rru_A0283 0.20 -0.0
348,212 + Rru_A0283 0.83 -0.0
348,212 + Rru_A0283 0.83 -1.4
348,212 + Rru_A0283 0.83 -0.0
348,212 + Rru_A0283 0.83 -0.0
348,212 + Rru_A0283 0.83 -0.0
348,212 + Rru_A0283 0.83 -0.9
348,213 - Rru_A0283 0.84 -0.0
348,213 - Rru_A0283 0.84 -0.0
348,213 - Rru_A0283 0.84 -0.0
348,213 - Rru_A0283 0.84 +1.4
348,273 + +0.2
348,273 + -0.0
348,274 - -0.0
348,349 + -0.0
348,406 + +0.1
348,461 + -0.0
348,461 + +0.4
348,461 + +0.8
348,461 + +0.4
348,462 - -0.0
348,563 + Rru_A0284 0.14 +0.3
348,563 + Rru_A0284 0.14 -0.0
348,563 + Rru_A0284 0.14 -0.0
348,563 + Rru_A0284 0.14 -0.0
348,563 + Rru_A0284 0.14 -0.0
348,563 + Rru_A0284 0.14 -0.0
348,563 + Rru_A0284 0.14 +1.0
348,563 + Rru_A0284 0.14 -0.0
348,563 + Rru_A0284 0.14 -0.0
348,563 + Rru_A0284 0.14 +0.8
348,563 + Rru_A0284 0.14 -0.0
348,563 + Rru_A0284 0.14 +0.1
348,563 + Rru_A0284 0.14 +0.7
348,563 + Rru_A0284 0.14 +0.1
348,563 + Rru_A0284 0.14 +0.3
348,564 - Rru_A0284 0.14 -0.0
348,564 - Rru_A0284 0.14 -0.0
348,564 - Rru_A0284 0.14 -0.5
348,565 + Rru_A0284 0.14 -0.0
348,566 - Rru_A0284 0.14 -0.0
348,566 - Rru_A0284 0.14 +0.1
349,139 + Rru_A0284 0.47 -0.0
349,139 + Rru_A0284 0.47 +0.3
349,140 - Rru_A0284 0.47 -0.0
349,140 - Rru_A0284 0.47 -1.6
349,140 - Rru_A0284 0.47 -0.0
349,177 + Rru_A0284 0.49 -0.0
349,250 + Rru_A0284 0.53 +0.4
349,251 - Rru_A0284 0.53 +0.6
349,251 - Rru_A0284 0.53 -0.0
349,253 - Rru_A0284 0.53 +0.7
349,253 - Rru_A0284 0.53 +1.1
349,294 + Rru_A0284 0.56 +0.5
349,294 + Rru_A0284 0.56 +0.2
349,295 - Rru_A0284 0.56 +0.2
349,295 - Rru_A0284 0.56 -0.0
349,328 + Rru_A0284 0.58 -1.0
349,328 + Rru_A0284 0.58 +0.1
349,329 - Rru_A0284 0.58 -2.1
349,329 - Rru_A0284 0.58 -0.0
349,436 + Rru_A0284 0.64 +0.1
349,436 + Rru_A0284 0.64 -0.0
349,436 + Rru_A0284 0.64 -0.7
349,436 + Rru_A0284 0.64 -0.2
349,437 - Rru_A0284 0.64 -0.0
349,437 - Rru_A0284 0.64 -0.0
349,437 - Rru_A0284 0.64 +0.0
349,437 - Rru_A0284 0.64 +1.7
349,437 - Rru_A0284 0.64 -0.0
349,437 - Rru_A0284 0.64 +0.2
349,437 - Rru_A0284 0.64 -0.0
349,553 + Rru_A0284 0.71 -0.2
349,553 + Rru_A0284 0.71 -0.0
349,553 + Rru_A0284 0.71 -0.0
349,554 - Rru_A0284 0.71 -0.4
349,790 + Rru_A0284 0.84 -0.0
349,790 + Rru_A0284 0.84 +1.0
349,790 + Rru_A0284 0.84 +0.3
349,790 + Rru_A0284 0.84 -0.0
349,790 + Rru_A0284 0.84 +0.8
349,790 + Rru_A0284 0.84 -0.0
349,790 + Rru_A0284 0.84 +0.4
349,791 - Rru_A0284 0.84 -0.0
349,791 - Rru_A0284 0.84 -0.0
349,791 - Rru_A0284 0.84 -0.6
349,791 - Rru_A0284 0.84 +0.5
349,791 - Rru_A0284 0.84 +0.1
349,791 - Rru_A0284 0.84 -0.0
349,791 - Rru_A0284 0.84 -0.0
349,791 - Rru_A0284 0.84 -1.6
349,791 - Rru_A0284 0.84 -0.6
349,791 - Rru_A0284 0.84 +0.1
349,791 - Rru_A0284 0.84 -0.0
349,791 - Rru_A0284 0.84 +0.7
349,791 - Rru_A0284 0.84 +0.3
349,791 - Rru_A0284 0.84 +0.4
349,886 + Rru_A0284 0.90 -1.0
349,887 - -0.0
350,148 + +0.5
350,148 + -0.0
350,148 + -0.2
350,148 + -1.1
350,394 - Rru_A0285 0.17 +0.5
350,394 - Rru_A0285 0.17 +1.6
350,477 + Rru_A0285 0.22 -0.0
350,478 - Rru_A0285 0.22 -0.0
350,478 - Rru_A0285 0.22 -0.5
350,478 - Rru_A0285 0.22 -0.0
350,478 - Rru_A0285 0.22 +0.3
350,927 + Rru_A0285 0.52 -0.0
350,928 - Rru_A0285 0.52 -0.0

Or see this region's nucleotide sequence