Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0271 and Rru_A0272 are separated by 92 nucleotides Rru_A0272 and Rru_A0273 are separated by 69 nucleotides Rru_A0273 and Rru_A0274 are separated by 183 nucleotides
Rru_A0271: Rru_A0271 - GTP cyclohydrolase I (NCBI), at 336,213 to 336,917
_A0271
Rru_A0272: Rru_A0272 - Small multidrug resistance protein (NCBI), at 337,010 to 337,321
_A0272
Rru_A0273: Rru_A0273 - Acetoacetyl-CoA reductase (NCBI), at 337,391 to 338,119
_A0273
Rru_A0274: Rru_A0274 - Acetyl-CoA C-acetyltransferase (NCBI), at 338,303 to 339,475
_A0274
Position (kb) 337
338
339 Strain fitness (log2 ratio) -2
-1
0
1
2 at 337.041 kb on + strand at 337.041 kb on + strand at 337.392 kb on + strand at 337.392 kb on + strand at 337.393 kb on - strand at 337.395 kb on + strand at 337.395 kb on + strand at 337.395 kb on + strand at 337.395 kb on + strand at 337.395 kb on + strand at 337.395 kb on + strand at 337.395 kb on + strand at 337.396 kb on - strand at 337.396 kb on - strand at 337.396 kb on - strand at 337.396 kb on - strand at 337.396 kb on - strand at 337.396 kb on - strand at 337.440 kb on + strand at 337.440 kb on + strand at 337.440 kb on + strand at 337.440 kb on + strand at 337.441 kb on - strand at 337.441 kb on - strand at 337.545 kb on + strand, within Rru_A0273 at 337.579 kb on - strand, within Rru_A0273 at 337.674 kb on + strand, within Rru_A0273 at 337.689 kb on + strand, within Rru_A0273 at 337.690 kb on - strand, within Rru_A0273 at 337.807 kb on + strand, within Rru_A0273 at 337.807 kb on + strand, within Rru_A0273 at 337.938 kb on + strand, within Rru_A0273 at 337.939 kb on - strand, within Rru_A0273 at 337.939 kb on - strand, within Rru_A0273 at 338.013 kb on + strand, within Rru_A0273 at 338.016 kb on + strand, within Rru_A0273 at 338.016 kb on + strand, within Rru_A0273 at 338.017 kb on - strand, within Rru_A0273 at 338.017 kb on - strand, within Rru_A0273 at 338.017 kb on - strand, within Rru_A0273 at 338.145 kb on + strand at 338.214 kb on + strand at 338.214 kb on + strand at 338.214 kb on + strand at 338.214 kb on + strand at 338.214 kb on + strand at 338.215 kb on - strand at 338.215 kb on - strand at 338.305 kb on - strand at 339.099 kb on + strand, within Rru_A0274 at 339.100 kb on - strand, within Rru_A0274 at 339.100 kb on - strand, within Rru_A0274 at 339.100 kb on - strand, within Rru_A0274 at 339.100 kb on - strand, within Rru_A0274
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 337,041 + +1.1 337,041 + +0.0 337,392 + +0.0 337,392 + -1.4 337,393 - +0.0 337,395 + +0.0 337,395 + +0.0 337,395 + +0.0 337,395 + -1.0 337,395 + -1.0 337,395 + -1.2 337,395 + +0.0 337,396 - -1.5 337,396 - +0.0 337,396 - +0.2 337,396 - -1.0 337,396 - +0.6 337,396 - -1.0 337,440 + +0.0 337,440 + -1.4 337,440 + +0.0 337,440 + -0.9 337,441 - -0.2 337,441 - -0.9 337,545 + Rru_A0273 0.21 -1.0 337,579 - Rru_A0273 0.26 +0.5 337,674 + Rru_A0273 0.39 +0.0 337,689 + Rru_A0273 0.41 -1.0 337,690 - Rru_A0273 0.41 +0.0 337,807 + Rru_A0273 0.57 -2.5 337,807 + Rru_A0273 0.57 +0.0 337,938 + Rru_A0273 0.75 -1.3 337,939 - Rru_A0273 0.75 -1.0 337,939 - Rru_A0273 0.75 +0.0 338,013 + Rru_A0273 0.85 +0.0 338,016 + Rru_A0273 0.86 -1.2 338,016 + Rru_A0273 0.86 -1.7 338,017 - Rru_A0273 0.86 +0.0 338,017 - Rru_A0273 0.86 -2.1 338,017 - Rru_A0273 0.86 +0.0 338,145 + -1.2 338,214 + +0.0 338,214 + -1.9 338,214 + +0.0 338,214 + -0.5 338,214 + -1.8 338,215 - +1.0 338,215 - +2.5 338,305 - +0.0 339,099 + Rru_A0274 0.68 -1.0 339,100 - Rru_A0274 0.68 +0.0 339,100 - Rru_A0274 0.68 +0.0 339,100 - Rru_A0274 0.68 -0.3 339,100 - Rru_A0274 0.68 +0.7
Or see this region's nucleotide sequence