Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0269 and Rru_A0270 are separated by 163 nucleotides Rru_A0270 and Rru_A0271 are separated by 172 nucleotides Rru_A0271 and Rru_A0272 are separated by 92 nucleotides
Rru_A0269: Rru_A0269 - hypothetical protein (NCBI), at 334,588 to 335,469
_A0269
Rru_A0270: Rru_A0270 - Protein of unknown function DUF525 (NCBI), at 335,633 to 336,040
_A0270
Rru_A0271: Rru_A0271 - GTP cyclohydrolase I (NCBI), at 336,213 to 336,917
_A0271
Rru_A0272: Rru_A0272 - Small multidrug resistance protein (NCBI), at 337,010 to 337,321
_A0272
Position (kb) 335
336
337 Strain fitness (log2 ratio) -1
0
1
2 at 334.641 kb on + strand at 334.651 kb on + strand at 334.651 kb on + strand at 335.536 kb on + strand at 335.536 kb on + strand at 335.536 kb on + strand at 335.536 kb on + strand at 335.537 kb on - strand at 335.537 kb on - strand at 335.537 kb on - strand at 335.548 kb on + strand at 335.549 kb on - strand at 335.566 kb on + strand at 335.628 kb on + strand at 335.629 kb on - strand at 335.651 kb on + strand at 335.651 kb on + strand at 335.651 kb on + strand at 335.652 kb on - strand at 335.733 kb on - strand, within Rru_A0270 at 335.733 kb on - strand, within Rru_A0270 at 335.744 kb on + strand, within Rru_A0270 at 335.744 kb on + strand, within Rru_A0270 at 335.745 kb on - strand, within Rru_A0270 at 335.897 kb on + strand, within Rru_A0270 at 335.898 kb on - strand, within Rru_A0270 at 335.898 kb on - strand, within Rru_A0270 at 335.898 kb on - strand, within Rru_A0270 at 335.898 kb on - strand, within Rru_A0270 at 335.898 kb on - strand, within Rru_A0270 at 335.898 kb on - strand, within Rru_A0270 at 335.948 kb on + strand, within Rru_A0270 at 335.948 kb on + strand, within Rru_A0270 at 335.949 kb on - strand, within Rru_A0270 at 335.949 kb on - strand, within Rru_A0270 at 336.115 kb on + strand at 336.115 kb on + strand at 336.115 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 334,641 + -1.0 334,651 + +0.0 334,651 + +0.0 335,536 + +0.0 335,536 + +0.0 335,536 + +0.4 335,536 + -0.7 335,537 - +0.0 335,537 - +0.0 335,537 - +0.0 335,548 + +0.9 335,549 - +0.6 335,566 + +0.0 335,628 + +0.3 335,629 - +0.5 335,651 + -0.5 335,651 + +0.2 335,651 + +0.8 335,652 - +0.2 335,733 - Rru_A0270 0.25 -0.4 335,733 - Rru_A0270 0.25 +0.0 335,744 + Rru_A0270 0.27 -0.8 335,744 + Rru_A0270 0.27 +1.0 335,745 - Rru_A0270 0.27 +0.0 335,897 + Rru_A0270 0.65 -0.7 335,898 - Rru_A0270 0.65 -1.0 335,898 - Rru_A0270 0.65 -1.0 335,898 - Rru_A0270 0.65 +0.0 335,898 - Rru_A0270 0.65 -0.8 335,898 - Rru_A0270 0.65 -0.2 335,898 - Rru_A0270 0.65 -1.1 335,948 + Rru_A0270 0.77 +0.0 335,948 + Rru_A0270 0.77 -1.0 335,949 - Rru_A0270 0.77 +0.3 335,949 - Rru_A0270 0.77 +0.0 336,115 + +2.1 336,115 + +0.0 336,115 + +0.4
Or see this region's nucleotide sequence