Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0250

Experiment: acetate; Light intensity 9 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0249 and Rru_A0250 are separated by 12 nucleotidesRru_A0250 and Rru_A0251 are separated by 2 nucleotides Rru_A0249: Rru_A0249 - ABC transporter component (NCBI), at 309,451 to 310,932 _A0249 Rru_A0250: Rru_A0250 - Xylulokinase (NCBI), at 310,945 to 312,441 _A0250 Rru_A0251: Rru_A0251 - Transcriptional Regulator, AraC family (NCBI), at 312,444 to 313,373 _A0251 Position (kb) 310 311 312 313Strain fitness (log2 ratio) -1 0 1 2at 310.022 kb on + strand, within Rru_A0249at 310.031 kb on + strand, within Rru_A0249at 310.031 kb on + strand, within Rru_A0249at 310.031 kb on + strand, within Rru_A0249at 310.031 kb on + strand, within Rru_A0249at 310.032 kb on - strand, within Rru_A0249at 310.076 kb on + strand, within Rru_A0249at 310.076 kb on + strand, within Rru_A0249at 310.076 kb on + strand, within Rru_A0249at 310.076 kb on + strand, within Rru_A0249at 310.076 kb on + strand, within Rru_A0249at 310.076 kb on + strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.193 kb on + strand, within Rru_A0249at 310.193 kb on + strand, within Rru_A0249at 310.193 kb on + strand, within Rru_A0249at 310.193 kb on + strand, within Rru_A0249at 310.193 kb on + strand, within Rru_A0249at 310.193 kb on + strand, within Rru_A0249at 310.194 kb on - strand, within Rru_A0249at 310.194 kb on - strand, within Rru_A0249at 310.296 kb on + strand, within Rru_A0249at 310.296 kb on + strand, within Rru_A0249at 310.296 kb on + strand, within Rru_A0249at 310.297 kb on - strand, within Rru_A0249at 310.297 kb on - strand, within Rru_A0249at 310.297 kb on - strand, within Rru_A0249at 310.297 kb on - strand, within Rru_A0249at 310.297 kb on - strand, within Rru_A0249at 310.297 kb on - strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.299 kb on - strand, within Rru_A0249at 310.343 kb on + strand, within Rru_A0249at 310.343 kb on + strand, within Rru_A0249at 310.343 kb on + strand, within Rru_A0249at 310.343 kb on + strand, within Rru_A0249at 310.344 kb on - strand, within Rru_A0249at 310.344 kb on - strand, within Rru_A0249at 310.344 kb on - strand, within Rru_A0249at 310.344 kb on - strand, within Rru_A0249at 310.344 kb on - strand, within Rru_A0249at 310.447 kb on - strand, within Rru_A0249at 310.628 kb on + strand, within Rru_A0249at 310.628 kb on + strand, within Rru_A0249at 310.628 kb on + strand, within Rru_A0249at 310.628 kb on + strand, within Rru_A0249at 310.628 kb on + strand, within Rru_A0249at 310.629 kb on - strand, within Rru_A0249at 310.629 kb on - strand, within Rru_A0249at 310.629 kb on - strand, within Rru_A0249at 310.629 kb on - strand, within Rru_A0249at 310.629 kb on - strand, within Rru_A0249at 310.890 kb on - strandat 310.890 kb on - strandat 310.890 kb on - strandat 310.890 kb on - strandat 310.890 kb on - strandat 310.890 kb on - strandat 310.938 kb on + strandat 310.938 kb on + strandat 310.938 kb on + strandat 311.010 kb on - strandat 311.625 kb on + strand, within Rru_A0250at 311.626 kb on - strand, within Rru_A0250at 311.627 kb on + strand, within Rru_A0250at 311.627 kb on + strand, within Rru_A0250at 311.627 kb on + strand, within Rru_A0250at 311.627 kb on + strand, within Rru_A0250at 311.628 kb on - strand, within Rru_A0250at 311.628 kb on - strand, within Rru_A0250at 311.633 kb on + strand, within Rru_A0250at 311.633 kb on + strand, within Rru_A0250at 311.634 kb on - strand, within Rru_A0250at 311.964 kb on - strand, within Rru_A0250at 312.045 kb on + strand, within Rru_A0250at 312.045 kb on + strand, within Rru_A0250at 312.045 kb on + strand, within Rru_A0250at 312.045 kb on + strand, within Rru_A0250at 312.045 kb on + strand, within Rru_A0250at 312.046 kb on - strand, within Rru_A0250at 312.046 kb on - strand, within Rru_A0250at 312.046 kb on - strand, within Rru_A0250at 312.541 kb on + strand, within Rru_A0251at 312.541 kb on + strand, within Rru_A0251at 312.541 kb on + strand, within Rru_A0251at 312.541 kb on + strand, within Rru_A0251at 312.542 kb on - strand, within Rru_A0251at 312.542 kb on - strand, within Rru_A0251at 312.542 kb on - strand, within Rru_A0251at 312.542 kb on - strand, within Rru_A0251at 312.542 kb on - strand, within Rru_A0251at 312.592 kb on + strand, within Rru_A0251at 312.592 kb on + strand, within Rru_A0251at 312.593 kb on - strand, within Rru_A0251at 312.593 kb on - strand, within Rru_A0251at 312.646 kb on + strand, within Rru_A0251at 312.646 kb on + strand, within Rru_A0251at 312.647 kb on - strand, within Rru_A0251at 312.647 kb on - strand, within Rru_A0251at 312.647 kb on - strand, within Rru_A0251at 312.647 kb on - strand, within Rru_A0251at 312.667 kb on + strand, within Rru_A0251at 312.668 kb on - strand, within Rru_A0251at 312.776 kb on - strand, within Rru_A0251at 312.776 kb on - strand, within Rru_A0251at 312.800 kb on + strand, within Rru_A0251at 312.800 kb on + strand, within Rru_A0251at 312.800 kb on + strand, within Rru_A0251at 312.801 kb on - strand, within Rru_A0251at 312.832 kb on + strand, within Rru_A0251at 312.832 kb on + strand, within Rru_A0251at 312.832 kb on + strand, within Rru_A0251at 312.833 kb on - strand, within Rru_A0251at 312.833 kb on - strand, within Rru_A0251at 313.129 kb on + strand, within Rru_A0251at 313.210 kb on + strand, within Rru_A0251at 313.210 kb on + strand, within Rru_A0251at 313.210 kb on + strand, within Rru_A0251at 313.211 kb on - strand, within Rru_A0251at 313.222 kb on + strand, within Rru_A0251at 313.223 kb on - strand, within Rru_A0251at 313.223 kb on - strand, within Rru_A0251at 313.261 kb on + strand, within Rru_A0251at 313.261 kb on + strand, within Rru_A0251at 313.273 kb on + strand, within Rru_A0251at 313.312 kb on + strandat 313.312 kb on + strandat 313.313 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
remove
310,022 + Rru_A0249 0.39 +0.0
310,031 + Rru_A0249 0.39 +0.0
310,031 + Rru_A0249 0.39 +0.0
310,031 + Rru_A0249 0.39 +0.7
310,031 + Rru_A0249 0.39 +0.0
310,032 - Rru_A0249 0.39 +0.0
310,076 + Rru_A0249 0.42 +0.6
310,076 + Rru_A0249 0.42 +0.0
310,076 + Rru_A0249 0.42 +0.0
310,076 + Rru_A0249 0.42 +0.6
310,076 + Rru_A0249 0.42 +0.4
310,076 + Rru_A0249 0.42 +0.0
310,077 - Rru_A0249 0.42 +0.6
310,077 - Rru_A0249 0.42 -1.0
310,077 - Rru_A0249 0.42 +0.0
310,077 - Rru_A0249 0.42 -0.5
310,077 - Rru_A0249 0.42 +0.0
310,077 - Rru_A0249 0.42 +0.2
310,077 - Rru_A0249 0.42 +0.3
310,077 - Rru_A0249 0.42 +0.7
310,077 - Rru_A0249 0.42 +0.0
310,193 + Rru_A0249 0.50 +0.0
310,193 + Rru_A0249 0.50 -0.5
310,193 + Rru_A0249 0.50 +0.0
310,193 + Rru_A0249 0.50 +0.0
310,193 + Rru_A0249 0.50 +0.6
310,193 + Rru_A0249 0.50 -0.3
310,194 - Rru_A0249 0.50 +0.0
310,194 - Rru_A0249 0.50 +0.4
310,296 + Rru_A0249 0.57 +0.0
310,296 + Rru_A0249 0.57 +0.0
310,296 + Rru_A0249 0.57 +0.7
310,297 - Rru_A0249 0.57 -0.3
310,297 - Rru_A0249 0.57 +0.0
310,297 - Rru_A0249 0.57 -0.2
310,297 - Rru_A0249 0.57 +0.3
310,297 - Rru_A0249 0.57 +0.4
310,297 - Rru_A0249 0.57 +0.0
310,298 + Rru_A0249 0.57 +0.0
310,298 + Rru_A0249 0.57 +0.0
310,298 + Rru_A0249 0.57 +0.3
310,298 + Rru_A0249 0.57 -0.8
310,298 + Rru_A0249 0.57 +0.0
310,298 + Rru_A0249 0.57 +0.0
310,298 + Rru_A0249 0.57 +0.0
310,299 - Rru_A0249 0.57 -0.1
310,343 + Rru_A0249 0.60 +0.0
310,343 + Rru_A0249 0.60 +1.7
310,343 + Rru_A0249 0.60 -1.0
310,343 + Rru_A0249 0.60 +0.0
310,344 - Rru_A0249 0.60 -0.3
310,344 - Rru_A0249 0.60 +0.0
310,344 - Rru_A0249 0.60 +0.1
310,344 - Rru_A0249 0.60 +0.1
310,344 - Rru_A0249 0.60 +0.0
310,447 - Rru_A0249 0.67 +0.7
310,628 + Rru_A0249 0.79 -0.0
310,628 + Rru_A0249 0.79 +0.0
310,628 + Rru_A0249 0.79 +0.2
310,628 + Rru_A0249 0.79 +1.2
310,628 + Rru_A0249 0.79 +0.0
310,629 - Rru_A0249 0.79 -0.4
310,629 - Rru_A0249 0.79 -0.6
310,629 - Rru_A0249 0.79 +0.4
310,629 - Rru_A0249 0.79 -0.6
310,629 - Rru_A0249 0.79 -0.4
310,890 - +0.2
310,890 - +0.2
310,890 - +0.0
310,890 - -0.2
310,890 - +0.7
310,890 - +1.0
310,938 + +0.6
310,938 + +1.9
310,938 + +0.4
311,010 - -1.0
311,625 + Rru_A0250 0.45 +0.4
311,626 - Rru_A0250 0.45 +0.0
311,627 + Rru_A0250 0.46 +0.7
311,627 + Rru_A0250 0.46 +0.0
311,627 + Rru_A0250 0.46 +0.0
311,627 + Rru_A0250 0.46 +0.0
311,628 - Rru_A0250 0.46 +0.5
311,628 - Rru_A0250 0.46 +0.6
311,633 + Rru_A0250 0.46 +0.1
311,633 + Rru_A0250 0.46 +0.1
311,634 - Rru_A0250 0.46 -1.6
311,964 - Rru_A0250 0.68 +0.1
312,045 + Rru_A0250 0.73 +0.0
312,045 + Rru_A0250 0.73 +0.0
312,045 + Rru_A0250 0.73 +0.2
312,045 + Rru_A0250 0.73 +0.0
312,045 + Rru_A0250 0.73 +0.3
312,046 - Rru_A0250 0.74 +0.0
312,046 - Rru_A0250 0.74 +0.0
312,046 - Rru_A0250 0.74 +0.0
312,541 + Rru_A0251 0.10 +0.1
312,541 + Rru_A0251 0.10 +0.5
312,541 + Rru_A0251 0.10 -0.1
312,541 + Rru_A0251 0.10 +0.5
312,542 - Rru_A0251 0.11 +0.6
312,542 - Rru_A0251 0.11 -1.0
312,542 - Rru_A0251 0.11 +0.0
312,542 - Rru_A0251 0.11 -1.0
312,542 - Rru_A0251 0.11 -0.0
312,592 + Rru_A0251 0.16 +0.0
312,592 + Rru_A0251 0.16 +0.0
312,593 - Rru_A0251 0.16 +0.0
312,593 - Rru_A0251 0.16 -1.0
312,646 + Rru_A0251 0.22 -0.1
312,646 + Rru_A0251 0.22 -0.1
312,647 - Rru_A0251 0.22 +0.0
312,647 - Rru_A0251 0.22 +0.0
312,647 - Rru_A0251 0.22 +0.0
312,647 - Rru_A0251 0.22 +0.0
312,667 + Rru_A0251 0.24 +0.7
312,668 - Rru_A0251 0.24 +0.0
312,776 - Rru_A0251 0.36 +0.0
312,776 - Rru_A0251 0.36 +0.0
312,800 + Rru_A0251 0.38 -0.6
312,800 + Rru_A0251 0.38 +0.0
312,800 + Rru_A0251 0.38 +0.3
312,801 - Rru_A0251 0.38 -0.4
312,832 + Rru_A0251 0.42 +0.0
312,832 + Rru_A0251 0.42 +0.0
312,832 + Rru_A0251 0.42 +0.0
312,833 - Rru_A0251 0.42 +0.0
312,833 - Rru_A0251 0.42 +0.0
313,129 + Rru_A0251 0.74 +0.7
313,210 + Rru_A0251 0.82 +0.0
313,210 + Rru_A0251 0.82 +0.2
313,210 + Rru_A0251 0.82 +0.7
313,211 - Rru_A0251 0.82 +0.0
313,222 + Rru_A0251 0.84 +0.0
313,223 - Rru_A0251 0.84 +0.4
313,223 - Rru_A0251 0.84 -1.0
313,261 + Rru_A0251 0.88 +0.3
313,261 + Rru_A0251 0.88 +0.0
313,273 + Rru_A0251 0.89 +0.0
313,312 + +0.0
313,312 + +0.0
313,313 - -0.4

Or see this region's nucleotide sequence