Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0249

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0248 and Rru_A0249 are separated by 74 nucleotidesRru_A0249 and Rru_A0250 are separated by 12 nucleotides Rru_A0248: Rru_A0248 - inner-membrane translocator (NCBI), at 308,360 to 309,376 _A0248 Rru_A0249: Rru_A0249 - ABC transporter component (NCBI), at 309,451 to 310,932 _A0249 Rru_A0250: Rru_A0250 - Xylulokinase (NCBI), at 310,945 to 312,441 _A0250 Position (kb) 309 310 311Strain fitness (log2 ratio) -2 -1 0 1 2at 308.577 kb on + strand, within Rru_A0248at 308.577 kb on + strand, within Rru_A0248at 308.577 kb on + strand, within Rru_A0248at 308.578 kb on - strand, within Rru_A0248at 308.578 kb on - strand, within Rru_A0248at 308.664 kb on + strand, within Rru_A0248at 308.664 kb on + strand, within Rru_A0248at 308.664 kb on + strand, within Rru_A0248at 308.664 kb on + strand, within Rru_A0248at 308.664 kb on + strand, within Rru_A0248at 308.664 kb on + strand, within Rru_A0248at 308.665 kb on - strand, within Rru_A0248at 308.665 kb on - strand, within Rru_A0248at 308.736 kb on + strand, within Rru_A0248at 308.736 kb on + strand, within Rru_A0248at 308.736 kb on + strand, within Rru_A0248at 308.736 kb on + strand, within Rru_A0248at 308.737 kb on - strand, within Rru_A0248at 308.737 kb on - strand, within Rru_A0248at 308.742 kb on + strand, within Rru_A0248at 308.762 kb on - strand, within Rru_A0248at 308.762 kb on - strand, within Rru_A0248at 309.043 kb on - strand, within Rru_A0248at 309.195 kb on - strand, within Rru_A0248at 309.221 kb on - strand, within Rru_A0248at 309.410 kb on - strandat 309.410 kb on - strandat 309.410 kb on - strandat 309.413 kb on - strandat 309.453 kb on - strandat 309.627 kb on - strand, within Rru_A0249at 309.627 kb on - strand, within Rru_A0249at 309.627 kb on - strand, within Rru_A0249at 309.853 kb on - strand, within Rru_A0249at 309.912 kb on + strand, within Rru_A0249at 309.935 kb on + strand, within Rru_A0249at 309.935 kb on + strand, within Rru_A0249at 309.935 kb on + strand, within Rru_A0249at 309.935 kb on + strand, within Rru_A0249at 309.935 kb on + strand, within Rru_A0249at 309.935 kb on + strand, within Rru_A0249at 310.022 kb on + strand, within Rru_A0249at 310.031 kb on + strand, within Rru_A0249at 310.031 kb on + strand, within Rru_A0249at 310.031 kb on + strand, within Rru_A0249at 310.031 kb on + strand, within Rru_A0249at 310.032 kb on - strand, within Rru_A0249at 310.076 kb on + strand, within Rru_A0249at 310.076 kb on + strand, within Rru_A0249at 310.076 kb on + strand, within Rru_A0249at 310.076 kb on + strand, within Rru_A0249at 310.076 kb on + strand, within Rru_A0249at 310.076 kb on + strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.193 kb on + strand, within Rru_A0249at 310.193 kb on + strand, within Rru_A0249at 310.193 kb on + strand, within Rru_A0249at 310.193 kb on + strand, within Rru_A0249at 310.193 kb on + strand, within Rru_A0249at 310.193 kb on + strand, within Rru_A0249at 310.194 kb on - strand, within Rru_A0249at 310.194 kb on - strand, within Rru_A0249at 310.296 kb on + strand, within Rru_A0249at 310.296 kb on + strand, within Rru_A0249at 310.296 kb on + strand, within Rru_A0249at 310.297 kb on - strand, within Rru_A0249at 310.297 kb on - strand, within Rru_A0249at 310.297 kb on - strand, within Rru_A0249at 310.297 kb on - strand, within Rru_A0249at 310.297 kb on - strand, within Rru_A0249at 310.297 kb on - strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.299 kb on - strand, within Rru_A0249at 310.343 kb on + strand, within Rru_A0249at 310.343 kb on + strand, within Rru_A0249at 310.343 kb on + strand, within Rru_A0249at 310.343 kb on + strand, within Rru_A0249at 310.344 kb on - strand, within Rru_A0249at 310.344 kb on - strand, within Rru_A0249at 310.344 kb on - strand, within Rru_A0249at 310.344 kb on - strand, within Rru_A0249at 310.344 kb on - strand, within Rru_A0249at 310.447 kb on - strand, within Rru_A0249at 310.628 kb on + strand, within Rru_A0249at 310.628 kb on + strand, within Rru_A0249at 310.628 kb on + strand, within Rru_A0249at 310.628 kb on + strand, within Rru_A0249at 310.628 kb on + strand, within Rru_A0249at 310.629 kb on - strand, within Rru_A0249at 310.629 kb on - strand, within Rru_A0249at 310.629 kb on - strand, within Rru_A0249at 310.629 kb on - strand, within Rru_A0249at 310.629 kb on - strand, within Rru_A0249at 310.890 kb on - strandat 310.890 kb on - strandat 310.890 kb on - strandat 310.890 kb on - strandat 310.890 kb on - strandat 310.890 kb on - strandat 310.938 kb on + strandat 310.938 kb on + strandat 310.938 kb on + strandat 311.010 kb on - strandat 311.625 kb on + strand, within Rru_A0250at 311.626 kb on - strand, within Rru_A0250at 311.627 kb on + strand, within Rru_A0250at 311.627 kb on + strand, within Rru_A0250at 311.627 kb on + strand, within Rru_A0250at 311.627 kb on + strand, within Rru_A0250at 311.628 kb on - strand, within Rru_A0250at 311.628 kb on - strand, within Rru_A0250at 311.633 kb on + strand, within Rru_A0250at 311.633 kb on + strand, within Rru_A0250at 311.634 kb on - strand, within Rru_A0250

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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308,577 + Rru_A0248 0.21 +0.0
308,577 + Rru_A0248 0.21 +0.3
308,577 + Rru_A0248 0.21 +0.0
308,578 - Rru_A0248 0.21 +0.0
308,578 - Rru_A0248 0.21 -0.2
308,664 + Rru_A0248 0.30 +0.0
308,664 + Rru_A0248 0.30 -0.2
308,664 + Rru_A0248 0.30 -0.4
308,664 + Rru_A0248 0.30 +0.5
308,664 + Rru_A0248 0.30 +1.3
308,664 + Rru_A0248 0.30 +0.0
308,665 - Rru_A0248 0.30 +0.6
308,665 - Rru_A0248 0.30 +0.8
308,736 + Rru_A0248 0.37 +0.0
308,736 + Rru_A0248 0.37 +0.2
308,736 + Rru_A0248 0.37 -0.1
308,736 + Rru_A0248 0.37 -2.0
308,737 - Rru_A0248 0.37 +0.3
308,737 - Rru_A0248 0.37 -1.6
308,742 + Rru_A0248 0.38 +1.0
308,762 - Rru_A0248 0.40 +0.0
308,762 - Rru_A0248 0.40 +0.0
309,043 - Rru_A0248 0.67 +0.1
309,195 - Rru_A0248 0.82 -2.6
309,221 - Rru_A0248 0.85 +0.0
309,410 - +0.0
309,410 - -1.4
309,410 - +0.0
309,413 - +0.4
309,453 - +0.0
309,627 - Rru_A0249 0.12 +0.2
309,627 - Rru_A0249 0.12 -0.9
309,627 - Rru_A0249 0.12 -0.5
309,853 - Rru_A0249 0.27 +0.0
309,912 + Rru_A0249 0.31 -0.7
309,935 + Rru_A0249 0.33 +0.0
309,935 + Rru_A0249 0.33 -1.0
309,935 + Rru_A0249 0.33 +0.1
309,935 + Rru_A0249 0.33 +0.9
309,935 + Rru_A0249 0.33 +0.0
309,935 + Rru_A0249 0.33 -0.2
310,022 + Rru_A0249 0.39 +0.0
310,031 + Rru_A0249 0.39 +0.0
310,031 + Rru_A0249 0.39 +0.0
310,031 + Rru_A0249 0.39 +0.7
310,031 + Rru_A0249 0.39 +0.0
310,032 - Rru_A0249 0.39 +0.0
310,076 + Rru_A0249 0.42 +0.6
310,076 + Rru_A0249 0.42 +0.0
310,076 + Rru_A0249 0.42 +0.0
310,076 + Rru_A0249 0.42 +0.6
310,076 + Rru_A0249 0.42 +0.4
310,076 + Rru_A0249 0.42 +0.0
310,077 - Rru_A0249 0.42 +0.6
310,077 - Rru_A0249 0.42 -1.0
310,077 - Rru_A0249 0.42 +0.0
310,077 - Rru_A0249 0.42 -0.5
310,077 - Rru_A0249 0.42 +0.0
310,077 - Rru_A0249 0.42 +0.2
310,077 - Rru_A0249 0.42 +0.3
310,077 - Rru_A0249 0.42 +0.7
310,077 - Rru_A0249 0.42 +0.0
310,193 + Rru_A0249 0.50 +0.0
310,193 + Rru_A0249 0.50 -0.5
310,193 + Rru_A0249 0.50 +0.0
310,193 + Rru_A0249 0.50 +0.0
310,193 + Rru_A0249 0.50 +0.6
310,193 + Rru_A0249 0.50 -0.3
310,194 - Rru_A0249 0.50 +0.0
310,194 - Rru_A0249 0.50 +0.4
310,296 + Rru_A0249 0.57 +0.0
310,296 + Rru_A0249 0.57 +0.0
310,296 + Rru_A0249 0.57 +0.7
310,297 - Rru_A0249 0.57 -0.3
310,297 - Rru_A0249 0.57 +0.0
310,297 - Rru_A0249 0.57 -0.2
310,297 - Rru_A0249 0.57 +0.3
310,297 - Rru_A0249 0.57 +0.4
310,297 - Rru_A0249 0.57 +0.0
310,298 + Rru_A0249 0.57 +0.0
310,298 + Rru_A0249 0.57 +0.0
310,298 + Rru_A0249 0.57 +0.3
310,298 + Rru_A0249 0.57 -0.8
310,298 + Rru_A0249 0.57 +0.0
310,298 + Rru_A0249 0.57 +0.0
310,298 + Rru_A0249 0.57 +0.0
310,299 - Rru_A0249 0.57 -0.1
310,343 + Rru_A0249 0.60 +0.0
310,343 + Rru_A0249 0.60 +1.7
310,343 + Rru_A0249 0.60 -1.0
310,343 + Rru_A0249 0.60 +0.0
310,344 - Rru_A0249 0.60 -0.3
310,344 - Rru_A0249 0.60 +0.0
310,344 - Rru_A0249 0.60 +0.1
310,344 - Rru_A0249 0.60 +0.1
310,344 - Rru_A0249 0.60 +0.0
310,447 - Rru_A0249 0.67 +0.7
310,628 + Rru_A0249 0.79 -0.0
310,628 + Rru_A0249 0.79 +0.0
310,628 + Rru_A0249 0.79 +0.2
310,628 + Rru_A0249 0.79 +1.2
310,628 + Rru_A0249 0.79 +0.0
310,629 - Rru_A0249 0.79 -0.4
310,629 - Rru_A0249 0.79 -0.6
310,629 - Rru_A0249 0.79 +0.4
310,629 - Rru_A0249 0.79 -0.6
310,629 - Rru_A0249 0.79 -0.4
310,890 - +0.2
310,890 - +0.2
310,890 - +0.0
310,890 - -0.2
310,890 - +0.7
310,890 - +1.0
310,938 + +0.6
310,938 + +1.9
310,938 + +0.4
311,010 - -1.0
311,625 + Rru_A0250 0.45 +0.4
311,626 - Rru_A0250 0.45 +0.0
311,627 + Rru_A0250 0.46 +0.7
311,627 + Rru_A0250 0.46 +0.0
311,627 + Rru_A0250 0.46 +0.0
311,627 + Rru_A0250 0.46 +0.0
311,628 - Rru_A0250 0.46 +0.5
311,628 - Rru_A0250 0.46 +0.6
311,633 + Rru_A0250 0.46 +0.1
311,633 + Rru_A0250 0.46 +0.1
311,634 - Rru_A0250 0.46 -1.6

Or see this region's nucleotide sequence