Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0242

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0241 and Rru_A0242 are separated by 14 nucleotidesRru_A0242 and Rru_A0243 are separated by 375 nucleotides Rru_A0241: Rru_A0241 - DNA methylase N-4/N-6 (NCBI), at 295,221 to 298,040 _A0241 Rru_A0242: Rru_A0242 - Type III restriction enzyme, res subunit (NCBI), at 298,055 to 301,099 _A0242 Rru_A0243: Rru_A0243 - tRNA/rRNA cytosine-C5-methylase (NCBI), at 301,475 to 302,839 _A0243 Position (kb) 298 299 300 301 302Strain fitness (log2 ratio) -2 -1 0 1 2at 297.056 kb on + strand, within Rru_A0241at 297.061 kb on - strand, within Rru_A0241at 297.078 kb on + strand, within Rru_A0241at 297.173 kb on + strand, within Rru_A0241at 297.264 kb on + strand, within Rru_A0241at 297.265 kb on - strand, within Rru_A0241at 297.406 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.416 kb on - strand, within Rru_A0241at 297.416 kb on - strand, within Rru_A0241at 297.569 kb on - strand, within Rru_A0241at 297.569 kb on - strand, within Rru_A0241at 297.676 kb on + strand, within Rru_A0241at 297.676 kb on + strand, within Rru_A0241at 297.676 kb on + strand, within Rru_A0241at 297.676 kb on + strand, within Rru_A0241at 297.677 kb on - strand, within Rru_A0241at 297.677 kb on - strand, within Rru_A0241at 297.677 kb on - strand, within Rru_A0241at 297.822 kb on - strandat 297.822 kb on - strandat 297.823 kb on + strandat 297.823 kb on + strandat 297.823 kb on + strandat 297.823 kb on + strandat 297.823 kb on + strandat 297.824 kb on - strandat 297.824 kb on - strandat 297.919 kb on + strandat 297.919 kb on + strandat 298.040 kb on + strandat 298.185 kb on + strandat 298.185 kb on + strandat 298.185 kb on + strandat 298.185 kb on + strandat 298.185 kb on + strandat 298.186 kb on - strandat 298.186 kb on - strandat 298.306 kb on - strandat 298.306 kb on - strandat 298.369 kb on - strand, within Rru_A0242at 298.495 kb on + strand, within Rru_A0242at 298.495 kb on + strand, within Rru_A0242at 298.530 kb on + strand, within Rru_A0242at 298.530 kb on + strand, within Rru_A0242at 298.530 kb on + strand, within Rru_A0242at 298.530 kb on + strand, within Rru_A0242at 298.530 kb on + strand, within Rru_A0242at 298.531 kb on - strand, within Rru_A0242at 298.531 kb on - strand, within Rru_A0242at 298.531 kb on - strand, within Rru_A0242at 298.531 kb on - strand, within Rru_A0242at 298.560 kb on + strand, within Rru_A0242at 298.582 kb on + strand, within Rru_A0242at 298.627 kb on - strand, within Rru_A0242at 298.759 kb on - strand, within Rru_A0242at 298.759 kb on - strand, within Rru_A0242at 298.807 kb on + strand, within Rru_A0242at 298.808 kb on - strand, within Rru_A0242at 299.100 kb on + strand, within Rru_A0242at 299.100 kb on + strand, within Rru_A0242at 299.365 kb on + strand, within Rru_A0242at 299.520 kb on + strand, within Rru_A0242at 299.587 kb on - strand, within Rru_A0242at 299.633 kb on - strand, within Rru_A0242at 299.633 kb on - strand, within Rru_A0242at 299.712 kb on + strand, within Rru_A0242at 299.712 kb on + strand, within Rru_A0242at 299.713 kb on - strand, within Rru_A0242at 299.713 kb on - strand, within Rru_A0242at 299.753 kb on + strand, within Rru_A0242at 299.754 kb on - strand, within Rru_A0242at 299.809 kb on + strand, within Rru_A0242at 299.810 kb on - strand, within Rru_A0242at 299.824 kb on + strand, within Rru_A0242at 299.824 kb on + strand, within Rru_A0242at 300.284 kb on + strand, within Rru_A0242at 300.285 kb on - strand, within Rru_A0242at 300.285 kb on - strand, within Rru_A0242at 300.318 kb on + strand, within Rru_A0242at 300.318 kb on + strand, within Rru_A0242at 300.318 kb on + strand, within Rru_A0242at 300.319 kb on - strand, within Rru_A0242at 300.319 kb on - strand, within Rru_A0242at 300.361 kb on + strand, within Rru_A0242at 300.361 kb on + strand, within Rru_A0242at 300.361 kb on + strand, within Rru_A0242at 300.362 kb on - strand, within Rru_A0242at 300.393 kb on + strand, within Rru_A0242at 300.394 kb on - strand, within Rru_A0242at 300.394 kb on - strand, within Rru_A0242at 300.598 kb on + strand, within Rru_A0242at 300.598 kb on + strand, within Rru_A0242at 300.598 kb on + strand, within Rru_A0242at 300.701 kb on + strand, within Rru_A0242at 300.701 kb on + strand, within Rru_A0242at 300.701 kb on + strand, within Rru_A0242at 300.701 kb on + strand, within Rru_A0242at 300.701 kb on + strand, within Rru_A0242at 300.701 kb on + strand, within Rru_A0242at 300.702 kb on - strand, within Rru_A0242at 300.861 kb on + strandat 300.862 kb on - strandat 301.057 kb on - strandat 301.066 kb on + strandat 301.066 kb on + strandat 301.066 kb on + strandat 301.066 kb on + strandat 301.117 kb on + strandat 301.117 kb on + strandat 301.117 kb on + strandat 301.117 kb on + strandat 301.118 kb on - strandat 301.138 kb on + strandat 301.138 kb on + strandat 301.139 kb on - strandat 301.185 kb on + strandat 301.186 kb on - strandat 301.208 kb on + strandat 301.220 kb on + strandat 301.220 kb on + strandat 301.220 kb on + strandat 301.220 kb on + strandat 301.221 kb on - strandat 301.221 kb on - strandat 301.364 kb on - strandat 301.364 kb on - strandat 301.364 kb on - strandat 301.406 kb on + strandat 301.407 kb on - strandat 301.407 kb on - strandat 301.407 kb on - strandat 301.417 kb on + strandat 301.417 kb on + strandat 301.418 kb on - strandat 301.418 kb on - strandat 301.477 kb on - strandat 301.672 kb on - strand, within Rru_A0243at 301.744 kb on - strand, within Rru_A0243at 301.744 kb on - strand, within Rru_A0243at 301.939 kb on + strand, within Rru_A0243at 301.976 kb on - strand, within Rru_A0243at 302.033 kb on - strand, within Rru_A0243

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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297,056 + Rru_A0241 0.65 +0.3
297,061 - Rru_A0241 0.65 -0.2
297,078 + Rru_A0241 0.66 +0.4
297,173 + Rru_A0241 0.69 +0.1
297,264 + Rru_A0241 0.72 -0.3
297,265 - Rru_A0241 0.72 +0.1
297,406 + Rru_A0241 0.77 +0.0
297,415 + Rru_A0241 0.78 -1.0
297,415 + Rru_A0241 0.78 -0.5
297,415 + Rru_A0241 0.78 +1.1
297,415 + Rru_A0241 0.78 +0.0
297,415 + Rru_A0241 0.78 -0.5
297,415 + Rru_A0241 0.78 -2.3
297,415 + Rru_A0241 0.78 +0.0
297,415 + Rru_A0241 0.78 +0.0
297,416 - Rru_A0241 0.78 +0.1
297,416 - Rru_A0241 0.78 -0.4
297,569 - Rru_A0241 0.83 +0.0
297,569 - Rru_A0241 0.83 -0.6
297,676 + Rru_A0241 0.87 -0.4
297,676 + Rru_A0241 0.87 -0.5
297,676 + Rru_A0241 0.87 +0.0
297,676 + Rru_A0241 0.87 -0.3
297,677 - Rru_A0241 0.87 -0.9
297,677 - Rru_A0241 0.87 +0.0
297,677 - Rru_A0241 0.87 +0.0
297,822 - +0.0
297,822 - -0.2
297,823 + -0.1
297,823 + +0.0
297,823 + +0.0
297,823 + +0.0
297,823 + +0.1
297,824 - -0.2
297,824 - +0.0
297,919 + +0.0
297,919 + -1.0
298,040 + +0.0
298,185 + +0.0
298,185 + -1.0
298,185 + +0.0
298,185 + +0.0
298,185 + -0.3
298,186 - -1.0
298,186 - +0.6
298,306 - -0.5
298,306 - +0.0
298,369 - Rru_A0242 0.10 -0.2
298,495 + Rru_A0242 0.14 -0.8
298,495 + Rru_A0242 0.14 +2.0
298,530 + Rru_A0242 0.16 +0.0
298,530 + Rru_A0242 0.16 +1.4
298,530 + Rru_A0242 0.16 +0.5
298,530 + Rru_A0242 0.16 +0.5
298,530 + Rru_A0242 0.16 -0.2
298,531 - Rru_A0242 0.16 +0.0
298,531 - Rru_A0242 0.16 +0.0
298,531 - Rru_A0242 0.16 +0.0
298,531 - Rru_A0242 0.16 +1.7
298,560 + Rru_A0242 0.17 +0.0
298,582 + Rru_A0242 0.17 -0.3
298,627 - Rru_A0242 0.19 +0.0
298,759 - Rru_A0242 0.23 -1.6
298,759 - Rru_A0242 0.23 +0.4
298,807 + Rru_A0242 0.25 +0.0
298,808 - Rru_A0242 0.25 +0.0
299,100 + Rru_A0242 0.34 +0.0
299,100 + Rru_A0242 0.34 +0.0
299,365 + Rru_A0242 0.43 +0.2
299,520 + Rru_A0242 0.48 +0.0
299,587 - Rru_A0242 0.50 +0.5
299,633 - Rru_A0242 0.52 +0.1
299,633 - Rru_A0242 0.52 +0.0
299,712 + Rru_A0242 0.54 -1.0
299,712 + Rru_A0242 0.54 -0.3
299,713 - Rru_A0242 0.54 +0.0
299,713 - Rru_A0242 0.54 -0.2
299,753 + Rru_A0242 0.56 +0.5
299,754 - Rru_A0242 0.56 -0.2
299,809 + Rru_A0242 0.58 -0.3
299,810 - Rru_A0242 0.58 +0.5
299,824 + Rru_A0242 0.58 +0.3
299,824 + Rru_A0242 0.58 +0.2
300,284 + Rru_A0242 0.73 +0.5
300,285 - Rru_A0242 0.73 +0.0
300,285 - Rru_A0242 0.73 +0.0
300,318 + Rru_A0242 0.74 +1.0
300,318 + Rru_A0242 0.74 +0.0
300,318 + Rru_A0242 0.74 +1.0
300,319 - Rru_A0242 0.74 +0.4
300,319 - Rru_A0242 0.74 +0.0
300,361 + Rru_A0242 0.76 -0.6
300,361 + Rru_A0242 0.76 +0.0
300,361 + Rru_A0242 0.76 +0.0
300,362 - Rru_A0242 0.76 -1.2
300,393 + Rru_A0242 0.77 +0.0
300,394 - Rru_A0242 0.77 -0.0
300,394 - Rru_A0242 0.77 -0.4
300,598 + Rru_A0242 0.84 +0.0
300,598 + Rru_A0242 0.84 +0.1
300,598 + Rru_A0242 0.84 -0.3
300,701 + Rru_A0242 0.87 -1.1
300,701 + Rru_A0242 0.87 +0.0
300,701 + Rru_A0242 0.87 +0.2
300,701 + Rru_A0242 0.87 +0.0
300,701 + Rru_A0242 0.87 +0.1
300,701 + Rru_A0242 0.87 -0.6
300,702 - Rru_A0242 0.87 -1.0
300,861 + +0.0
300,862 - -0.3
301,057 - +0.0
301,066 + -0.2
301,066 + +0.6
301,066 + +1.3
301,066 + +0.0
301,117 + -0.7
301,117 + -1.6
301,117 + +0.1
301,117 + +0.6
301,118 - +0.0
301,138 + +0.3
301,138 + +0.3
301,139 - +0.5
301,185 + +0.6
301,186 - -0.1
301,208 + +0.8
301,220 + +0.6
301,220 + +0.8
301,220 + +0.9
301,220 + +0.0
301,221 - +0.0
301,221 - -0.2
301,364 - +1.0
301,364 - +0.2
301,364 - -0.1
301,406 + +0.8
301,407 - +0.9
301,407 - +0.4
301,407 - +0.1
301,417 + -1.0
301,417 + +1.0
301,418 - +0.0
301,418 - +0.0
301,477 - +0.0
301,672 - Rru_A0243 0.14 -0.7
301,744 - Rru_A0243 0.20 -0.5
301,744 - Rru_A0243 0.20 +0.3
301,939 + Rru_A0243 0.34 -0.5
301,976 - Rru_A0243 0.37 -1.3
302,033 - Rru_A0243 0.41 -1.3

Or see this region's nucleotide sequence