Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0241

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0238 and Rru_A0239 are separated by 61 nucleotidesRru_A0239 and Rru_A0240 are separated by 12 nucleotidesRru_A0240 and Rru_A0241 are separated by 93 nucleotidesRru_A0241 and Rru_A0242 are separated by 14 nucleotides Rru_A0238: Rru_A0238 - hypothetical protein (NCBI), at 294,092 to 294,277 _A0238 Rru_A0239: Rru_A0239 - hypothetical protein (NCBI), at 294,339 to 294,563 _A0239 Rru_A0240: Rru_A0240 - NUDIX hydrolase (NCBI), at 294,576 to 295,127 _A0240 Rru_A0241: Rru_A0241 - DNA methylase N-4/N-6 (NCBI), at 295,221 to 298,040 _A0241 Rru_A0242: Rru_A0242 - Type III restriction enzyme, res subunit (NCBI), at 298,055 to 301,099 _A0242 Position (kb) 295 296 297 298 299Strain fitness (log2 ratio) -2 -1 0 1 2 3at 294.492 kb on + strand, within Rru_A0239at 294.492 kb on + strand, within Rru_A0239at 294.492 kb on + strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.494 kb on + strand, within Rru_A0239at 294.494 kb on + strand, within Rru_A0239at 294.495 kb on - strand, within Rru_A0239at 294.495 kb on - strand, within Rru_A0239at 294.516 kb on + strand, within Rru_A0239at 294.518 kb on + strand, within Rru_A0239at 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.544 kb on - strandat 294.872 kb on + strand, within Rru_A0240at 294.872 kb on + strand, within Rru_A0240at 294.873 kb on - strand, within Rru_A0240at 294.874 kb on + strand, within Rru_A0240at 294.875 kb on - strand, within Rru_A0240at 294.875 kb on - strand, within Rru_A0240at 294.875 kb on - strand, within Rru_A0240at 294.875 kb on - strand, within Rru_A0240at 294.894 kb on + strand, within Rru_A0240at 294.895 kb on - strand, within Rru_A0240at 294.895 kb on - strand, within Rru_A0240at 294.895 kb on - strand, within Rru_A0240at 294.896 kb on + strand, within Rru_A0240at 294.896 kb on + strand, within Rru_A0240at 294.897 kb on - strand, within Rru_A0240at 294.897 kb on - strand, within Rru_A0240at 294.930 kb on + strand, within Rru_A0240at 294.931 kb on - strand, within Rru_A0240at 294.931 kb on - strand, within Rru_A0240at 294.931 kb on - strand, within Rru_A0240at 294.931 kb on - strand, within Rru_A0240at 295.029 kb on + strand, within Rru_A0240at 295.093 kb on - strandat 295.093 kb on - strandat 295.114 kb on - strandat 295.114 kb on - strandat 295.114 kb on - strandat 295.114 kb on - strandat 295.125 kb on + strandat 295.125 kb on + strandat 295.126 kb on - strandat 295.222 kb on + strandat 295.222 kb on + strandat 295.223 kb on - strandat 295.223 kb on - strandat 295.223 kb on - strandat 295.323 kb on - strandat 295.323 kb on - strandat 295.390 kb on + strandat 295.390 kb on + strandat 295.390 kb on + strandat 295.390 kb on + strandat 295.391 kb on - strandat 295.391 kb on - strandat 295.391 kb on - strandat 295.391 kb on - strandat 295.391 kb on - strandat 295.391 kb on - strandat 295.391 kb on - strandat 295.414 kb on + strandat 295.415 kb on - strandat 295.415 kb on - strandat 295.446 kb on - strandat 295.448 kb on - strandat 295.523 kb on + strand, within Rru_A0241at 295.523 kb on + strand, within Rru_A0241at 295.524 kb on - strand, within Rru_A0241at 296.141 kb on - strand, within Rru_A0241at 296.141 kb on - strand, within Rru_A0241at 296.153 kb on - strand, within Rru_A0241at 296.158 kb on + strand, within Rru_A0241at 296.158 kb on + strand, within Rru_A0241at 296.397 kb on - strand, within Rru_A0241at 296.429 kb on - strand, within Rru_A0241at 296.533 kb on + strand, within Rru_A0241at 296.533 kb on + strand, within Rru_A0241at 296.533 kb on + strand, within Rru_A0241at 296.533 kb on + strand, within Rru_A0241at 296.533 kb on + strand, within Rru_A0241at 296.534 kb on - strand, within Rru_A0241at 296.534 kb on - strand, within Rru_A0241at 296.534 kb on - strand, within Rru_A0241at 296.534 kb on - strand, within Rru_A0241at 296.534 kb on - strand, within Rru_A0241at 296.534 kb on - strand, within Rru_A0241at 296.536 kb on + strand, within Rru_A0241at 296.536 kb on + strand, within Rru_A0241at 296.536 kb on + strand, within Rru_A0241at 296.537 kb on - strand, within Rru_A0241at 296.543 kb on - strand, within Rru_A0241at 296.673 kb on + strand, within Rru_A0241at 296.674 kb on - strand, within Rru_A0241at 296.697 kb on + strand, within Rru_A0241at 296.697 kb on + strand, within Rru_A0241at 296.697 kb on + strand, within Rru_A0241at 297.056 kb on + strand, within Rru_A0241at 297.061 kb on - strand, within Rru_A0241at 297.078 kb on + strand, within Rru_A0241at 297.173 kb on + strand, within Rru_A0241at 297.264 kb on + strand, within Rru_A0241at 297.265 kb on - strand, within Rru_A0241at 297.406 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.416 kb on - strand, within Rru_A0241at 297.416 kb on - strand, within Rru_A0241at 297.569 kb on - strand, within Rru_A0241at 297.569 kb on - strand, within Rru_A0241at 297.676 kb on + strand, within Rru_A0241at 297.676 kb on + strand, within Rru_A0241at 297.676 kb on + strand, within Rru_A0241at 297.676 kb on + strand, within Rru_A0241at 297.677 kb on - strand, within Rru_A0241at 297.677 kb on - strand, within Rru_A0241at 297.677 kb on - strand, within Rru_A0241at 297.822 kb on - strandat 297.822 kb on - strandat 297.823 kb on + strandat 297.823 kb on + strandat 297.823 kb on + strandat 297.823 kb on + strandat 297.823 kb on + strandat 297.824 kb on - strandat 297.824 kb on - strandat 297.919 kb on + strandat 297.919 kb on + strandat 298.040 kb on + strandat 298.185 kb on + strandat 298.185 kb on + strandat 298.185 kb on + strandat 298.185 kb on + strandat 298.185 kb on + strandat 298.186 kb on - strandat 298.186 kb on - strandat 298.306 kb on - strandat 298.306 kb on - strandat 298.369 kb on - strand, within Rru_A0242at 298.495 kb on + strand, within Rru_A0242at 298.495 kb on + strand, within Rru_A0242at 298.530 kb on + strand, within Rru_A0242at 298.530 kb on + strand, within Rru_A0242at 298.530 kb on + strand, within Rru_A0242at 298.530 kb on + strand, within Rru_A0242at 298.530 kb on + strand, within Rru_A0242at 298.531 kb on - strand, within Rru_A0242at 298.531 kb on - strand, within Rru_A0242at 298.531 kb on - strand, within Rru_A0242at 298.531 kb on - strand, within Rru_A0242at 298.560 kb on + strand, within Rru_A0242at 298.582 kb on + strand, within Rru_A0242at 298.627 kb on - strand, within Rru_A0242at 298.759 kb on - strand, within Rru_A0242at 298.759 kb on - strand, within Rru_A0242at 298.807 kb on + strand, within Rru_A0242at 298.808 kb on - strand, within Rru_A0242

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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294,492 + Rru_A0239 0.68 +0.0
294,492 + Rru_A0239 0.68 +1.1
294,492 + Rru_A0239 0.68 +0.0
294,493 - Rru_A0239 0.68 -1.0
294,493 - Rru_A0239 0.68 -0.4
294,493 - Rru_A0239 0.68 +0.0
294,493 - Rru_A0239 0.68 +0.2
294,493 - Rru_A0239 0.68 +0.0
294,494 + Rru_A0239 0.69 +0.8
294,494 + Rru_A0239 0.69 +0.9
294,495 - Rru_A0239 0.69 +0.0
294,495 - Rru_A0239 0.69 -1.6
294,516 + Rru_A0239 0.79 +1.6
294,518 + Rru_A0239 0.80 +0.0
294,543 + +0.0
294,543 + +1.2
294,543 + +1.0
294,543 + +0.0
294,543 + +0.3
294,543 + +1.2
294,543 + +1.0
294,543 + +0.8
294,544 - +0.0
294,872 + Rru_A0240 0.54 +0.0
294,872 + Rru_A0240 0.54 +0.7
294,873 - Rru_A0240 0.54 -0.2
294,874 + Rru_A0240 0.54 +0.9
294,875 - Rru_A0240 0.54 +0.0
294,875 - Rru_A0240 0.54 +0.0
294,875 - Rru_A0240 0.54 +0.2
294,875 - Rru_A0240 0.54 +0.0
294,894 + Rru_A0240 0.58 -1.0
294,895 - Rru_A0240 0.58 +1.3
294,895 - Rru_A0240 0.58 +0.0
294,895 - Rru_A0240 0.58 +0.0
294,896 + Rru_A0240 0.58 -1.0
294,896 + Rru_A0240 0.58 +1.2
294,897 - Rru_A0240 0.58 +0.5
294,897 - Rru_A0240 0.58 +0.0
294,930 + Rru_A0240 0.64 +0.0
294,931 - Rru_A0240 0.64 +1.1
294,931 - Rru_A0240 0.64 -0.3
294,931 - Rru_A0240 0.64 -0.8
294,931 - Rru_A0240 0.64 +0.2
295,029 + Rru_A0240 0.82 +0.3
295,093 - +1.3
295,093 - +0.0
295,114 - +0.0
295,114 - +3.5
295,114 - -1.0
295,114 - +0.3
295,125 + +1.8
295,125 + +1.7
295,126 - +0.0
295,222 + -1.0
295,222 + +0.0
295,223 - +1.3
295,223 - +1.4
295,223 - +1.2
295,323 - +0.0
295,323 - +0.0
295,390 + +0.0
295,390 + +0.6
295,390 + +0.0
295,390 + +0.0
295,391 - +0.0
295,391 - +0.0
295,391 - +0.0
295,391 - +0.0
295,391 - +1.1
295,391 - +0.9
295,391 - +1.4
295,414 + +0.3
295,415 - +1.0
295,415 - +1.1
295,446 - -0.6
295,448 - +0.0
295,523 + Rru_A0241 0.11 +0.7
295,523 + Rru_A0241 0.11 -1.4
295,524 - Rru_A0241 0.11 -0.2
296,141 - Rru_A0241 0.33 +0.0
296,141 - Rru_A0241 0.33 +0.4
296,153 - Rru_A0241 0.33 +0.2
296,158 + Rru_A0241 0.33 +0.1
296,158 + Rru_A0241 0.33 +0.6
296,397 - Rru_A0241 0.42 -0.4
296,429 - Rru_A0241 0.43 +0.3
296,533 + Rru_A0241 0.47 -2.0
296,533 + Rru_A0241 0.47 +0.3
296,533 + Rru_A0241 0.47 -0.3
296,533 + Rru_A0241 0.47 -0.3
296,533 + Rru_A0241 0.47 +0.0
296,534 - Rru_A0241 0.47 +0.0
296,534 - Rru_A0241 0.47 +0.1
296,534 - Rru_A0241 0.47 +0.0
296,534 - Rru_A0241 0.47 -0.3
296,534 - Rru_A0241 0.47 +0.0
296,534 - Rru_A0241 0.47 -0.1
296,536 + Rru_A0241 0.47 +0.0
296,536 + Rru_A0241 0.47 +0.0
296,536 + Rru_A0241 0.47 +0.0
296,537 - Rru_A0241 0.47 +0.0
296,543 - Rru_A0241 0.47 +0.0
296,673 + Rru_A0241 0.51 +0.6
296,674 - Rru_A0241 0.52 +0.8
296,697 + Rru_A0241 0.52 +0.2
296,697 + Rru_A0241 0.52 +0.3
296,697 + Rru_A0241 0.52 -0.9
297,056 + Rru_A0241 0.65 +0.3
297,061 - Rru_A0241 0.65 -0.2
297,078 + Rru_A0241 0.66 +0.4
297,173 + Rru_A0241 0.69 +0.1
297,264 + Rru_A0241 0.72 -0.3
297,265 - Rru_A0241 0.72 +0.1
297,406 + Rru_A0241 0.77 +0.0
297,415 + Rru_A0241 0.78 -1.0
297,415 + Rru_A0241 0.78 -0.5
297,415 + Rru_A0241 0.78 +1.1
297,415 + Rru_A0241 0.78 +0.0
297,415 + Rru_A0241 0.78 -0.5
297,415 + Rru_A0241 0.78 -2.3
297,415 + Rru_A0241 0.78 +0.0
297,415 + Rru_A0241 0.78 +0.0
297,416 - Rru_A0241 0.78 +0.1
297,416 - Rru_A0241 0.78 -0.4
297,569 - Rru_A0241 0.83 +0.0
297,569 - Rru_A0241 0.83 -0.6
297,676 + Rru_A0241 0.87 -0.4
297,676 + Rru_A0241 0.87 -0.5
297,676 + Rru_A0241 0.87 +0.0
297,676 + Rru_A0241 0.87 -0.3
297,677 - Rru_A0241 0.87 -0.9
297,677 - Rru_A0241 0.87 +0.0
297,677 - Rru_A0241 0.87 +0.0
297,822 - +0.0
297,822 - -0.2
297,823 + -0.1
297,823 + +0.0
297,823 + +0.0
297,823 + +0.0
297,823 + +0.1
297,824 - -0.2
297,824 - +0.0
297,919 + +0.0
297,919 + -1.0
298,040 + +0.0
298,185 + +0.0
298,185 + -1.0
298,185 + +0.0
298,185 + +0.0
298,185 + -0.3
298,186 - -1.0
298,186 - +0.6
298,306 - -0.5
298,306 - +0.0
298,369 - Rru_A0242 0.10 -0.2
298,495 + Rru_A0242 0.14 -0.8
298,495 + Rru_A0242 0.14 +2.0
298,530 + Rru_A0242 0.16 +0.0
298,530 + Rru_A0242 0.16 +1.4
298,530 + Rru_A0242 0.16 +0.5
298,530 + Rru_A0242 0.16 +0.5
298,530 + Rru_A0242 0.16 -0.2
298,531 - Rru_A0242 0.16 +0.0
298,531 - Rru_A0242 0.16 +0.0
298,531 - Rru_A0242 0.16 +0.0
298,531 - Rru_A0242 0.16 +1.7
298,560 + Rru_A0242 0.17 +0.0
298,582 + Rru_A0242 0.17 -0.3
298,627 - Rru_A0242 0.19 +0.0
298,759 - Rru_A0242 0.23 -1.6
298,759 - Rru_A0242 0.23 +0.4
298,807 + Rru_A0242 0.25 +0.0
298,808 - Rru_A0242 0.25 +0.0

Or see this region's nucleotide sequence