Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0224 and Rru_A0225 overlap by 4 nucleotides Rru_A0225 and Rru_A0226 are separated by 23 nucleotides Rru_A0226 and Rru_A0227 are separated by 116 nucleotides Rru_A0227 and Rru_A0228 overlap by 4 nucleotides
Rru_A0224: Rru_A0224 - Protein of unknown function DUF160 (NCBI), at 276,621 to 277,595
_A0224
Rru_A0225: Rru_A0225 - Metal dependent phosphohydrolase, HD region (NCBI), at 277,592 to 278,266
_A0225
Rru_A0226: Rru_A0226 - Major facilitator superfamily MFS_1 (NCBI), at 278,290 to 279,630
_A0226
Rru_A0227: Rru_A0227 - hypothetical protein (NCBI), at 279,747 to 280,085
_A0227
Rru_A0228: Rru_A0228 - Twin-arginine translocation pathway signal (NCBI), at 280,082 to 280,984
_A0228
Position (kb) 278
279
280 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 277.495 kb on + strand, within Rru_A0224 at 277.496 kb on - strand, within Rru_A0224 at 277.936 kb on - strand, within Rru_A0225 at 277.936 kb on - strand, within Rru_A0225 at 277.936 kb on - strand, within Rru_A0225 at 278.481 kb on + strand, within Rru_A0226 at 278.482 kb on - strand, within Rru_A0226 at 278.482 kb on - strand, within Rru_A0226 at 278.482 kb on - strand, within Rru_A0226 at 278.482 kb on - strand, within Rru_A0226 at 278.484 kb on - strand, within Rru_A0226 at 278.592 kb on + strand, within Rru_A0226 at 278.594 kb on + strand, within Rru_A0226 at 278.595 kb on - strand, within Rru_A0226 at 278.963 kb on + strand, within Rru_A0226 at 278.964 kb on - strand, within Rru_A0226 at 278.964 kb on - strand, within Rru_A0226 at 279.026 kb on + strand, within Rru_A0226 at 279.026 kb on + strand, within Rru_A0226 at 279.027 kb on - strand, within Rru_A0226 at 279.027 kb on - strand, within Rru_A0226 at 279.135 kb on - strand, within Rru_A0226 at 279.135 kb on - strand, within Rru_A0226 at 279.135 kb on - strand, within Rru_A0226 at 279.135 kb on - strand, within Rru_A0226 at 279.212 kb on + strand, within Rru_A0226 at 279.225 kb on + strand, within Rru_A0226 at 279.225 kb on + strand, within Rru_A0226 at 279.226 kb on - strand, within Rru_A0226 at 279.226 kb on - strand, within Rru_A0226 at 279.227 kb on + strand, within Rru_A0226 at 279.227 kb on + strand, within Rru_A0226 at 279.227 kb on + strand, within Rru_A0226 at 279.228 kb on - strand, within Rru_A0226 at 279.228 kb on - strand, within Rru_A0226 at 279.228 kb on - strand, within Rru_A0226 at 279.228 kb on - strand, within Rru_A0226 at 279.228 kb on - strand, within Rru_A0226 at 279.270 kb on + strand, within Rru_A0226 at 279.480 kb on - strand, within Rru_A0226 at 279.480 kb on - strand, within Rru_A0226 at 279.482 kb on + strand, within Rru_A0226 at 279.820 kb on + strand, within Rru_A0227 at 279.820 kb on + strand, within Rru_A0227 at 279.821 kb on - strand, within Rru_A0227 at 279.821 kb on - strand, within Rru_A0227 at 279.841 kb on + strand, within Rru_A0227 at 279.841 kb on + strand, within Rru_A0227 at 280.171 kb on + strand at 280.171 kb on + strand at 280.171 kb on + strand at 280.171 kb on + strand at 280.171 kb on + strand at 280.171 kb on + strand at 280.172 kb on - strand at 280.172 kb on - strand at 280.172 kb on - strand at 280.172 kb on - strand at 280.172 kb on - strand at 280.172 kb on - strand at 280.172 kb on - strand at 280.173 kb on + strand, within Rru_A0228 at 280.173 kb on + strand, within Rru_A0228 at 280.173 kb on + strand, within Rru_A0228 at 280.173 kb on + strand, within Rru_A0228 at 280.174 kb on - strand, within Rru_A0228 at 280.174 kb on - strand, within Rru_A0228 at 280.174 kb on - strand, within Rru_A0228 at 280.174 kb on - strand, within Rru_A0228 at 280.487 kb on - strand, within Rru_A0228
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 277,495 + Rru_A0224 0.90 +0.0 277,496 - Rru_A0224 0.90 +0.0 277,936 - Rru_A0225 0.51 +0.9 277,936 - Rru_A0225 0.51 +0.0 277,936 - Rru_A0225 0.51 +0.4 278,481 + Rru_A0226 0.14 +0.0 278,482 - Rru_A0226 0.14 +0.0 278,482 - Rru_A0226 0.14 +0.0 278,482 - Rru_A0226 0.14 -0.8 278,482 - Rru_A0226 0.14 +0.0 278,484 - Rru_A0226 0.14 -0.4 278,592 + Rru_A0226 0.23 +0.0 278,594 + Rru_A0226 0.23 +0.0 278,595 - Rru_A0226 0.23 +0.1 278,963 + Rru_A0226 0.50 -3.0 278,964 - Rru_A0226 0.50 +0.0 278,964 - Rru_A0226 0.50 -1.6 279,026 + Rru_A0226 0.55 +0.0 279,026 + Rru_A0226 0.55 +0.1 279,027 - Rru_A0226 0.55 -1.6 279,027 - Rru_A0226 0.55 +0.0 279,135 - Rru_A0226 0.63 -0.8 279,135 - Rru_A0226 0.63 +0.0 279,135 - Rru_A0226 0.63 +0.3 279,135 - Rru_A0226 0.63 +0.0 279,212 + Rru_A0226 0.69 +0.0 279,225 + Rru_A0226 0.70 +0.2 279,225 + Rru_A0226 0.70 +0.0 279,226 - Rru_A0226 0.70 +0.0 279,226 - Rru_A0226 0.70 +0.0 279,227 + Rru_A0226 0.70 +0.0 279,227 + Rru_A0226 0.70 -0.6 279,227 + Rru_A0226 0.70 +0.0 279,228 - Rru_A0226 0.70 -0.2 279,228 - Rru_A0226 0.70 +0.0 279,228 - Rru_A0226 0.70 +0.1 279,228 - Rru_A0226 0.70 +0.4 279,228 - Rru_A0226 0.70 +0.5 279,270 + Rru_A0226 0.73 -0.4 279,480 - Rru_A0226 0.89 +0.1 279,480 - Rru_A0226 0.89 +0.0 279,482 + Rru_A0226 0.89 +0.0 279,820 + Rru_A0227 0.22 +0.6 279,820 + Rru_A0227 0.22 +0.0 279,821 - Rru_A0227 0.22 +0.0 279,821 - Rru_A0227 0.22 +0.0 279,841 + Rru_A0227 0.28 +0.0 279,841 + Rru_A0227 0.28 +0.7 280,171 + +0.0 280,171 + -1.0 280,171 + +1.2 280,171 + +0.0 280,171 + +0.9 280,171 + +0.0 280,172 - +0.3 280,172 - +0.8 280,172 - +0.6 280,172 - +1.2 280,172 - +0.0 280,172 - +1.3 280,172 - +0.0 280,173 + Rru_A0228 0.10 +0.0 280,173 + Rru_A0228 0.10 +0.3 280,173 + Rru_A0228 0.10 +0.7 280,173 + Rru_A0228 0.10 +0.5 280,174 - Rru_A0228 0.10 +1.3 280,174 - Rru_A0228 0.10 +0.4 280,174 - Rru_A0228 0.10 +0.7 280,174 - Rru_A0228 0.10 +0.0 280,487 - Rru_A0228 0.45 +0.4
Or see this region's nucleotide sequence