Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0216

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0215 and Rru_A0216 are separated by 136 nucleotidesRru_A0216 and Rru_A0217 are separated by 189 nucleotides Rru_A0215: Rru_A0215 - Protein of unknown function DUF6, transmembrane (NCBI), at 267,048 to 268,052 _A0215 Rru_A0216: Rru_A0216 - Transcriptional Regulator, AsnC family (NCBI), at 268,189 to 268,683 _A0216 Rru_A0217: Rru_A0217 - Citrate lyase (NCBI), at 268,873 to 269,850 _A0217 Position (kb) 268 269Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 267.290 kb on - strand, within Rru_A0215at 267.337 kb on + strand, within Rru_A0215at 267.337 kb on + strand, within Rru_A0215at 267.338 kb on - strand, within Rru_A0215at 267.338 kb on - strand, within Rru_A0215at 267.338 kb on - strand, within Rru_A0215at 267.338 kb on - strand, within Rru_A0215at 267.695 kb on + strand, within Rru_A0215at 267.695 kb on + strand, within Rru_A0215at 267.695 kb on + strand, within Rru_A0215at 267.695 kb on + strand, within Rru_A0215at 267.696 kb on - strand, within Rru_A0215at 267.696 kb on - strand, within Rru_A0215at 267.696 kb on - strand, within Rru_A0215at 267.696 kb on - strand, within Rru_A0215at 267.697 kb on + strand, within Rru_A0215at 267.698 kb on - strand, within Rru_A0215at 267.729 kb on - strand, within Rru_A0215at 267.730 kb on + strand, within Rru_A0215at 267.730 kb on + strand, within Rru_A0215at 267.730 kb on + strand, within Rru_A0215at 267.730 kb on + strand, within Rru_A0215at 267.731 kb on - strand, within Rru_A0215at 267.731 kb on - strand, within Rru_A0215at 267.941 kb on + strand, within Rru_A0215at 267.941 kb on + strand, within Rru_A0215at 267.941 kb on + strand, within Rru_A0215at 267.942 kb on - strand, within Rru_A0215at 267.942 kb on - strand, within Rru_A0215at 267.942 kb on - strand, within Rru_A0215at 268.495 kb on + strand, within Rru_A0216at 268.495 kb on + strand, within Rru_A0216at 268.495 kb on + strand, within Rru_A0216at 268.496 kb on - strand, within Rru_A0216at 268.555 kb on + strand, within Rru_A0216at 268.556 kb on - strand, within Rru_A0216at 268.639 kb on + strandat 268.639 kb on + strandat 268.639 kb on + strandat 268.639 kb on + strandat 268.639 kb on + strandat 268.639 kb on + strandat 268.639 kb on + strandat 268.640 kb on - strandat 268.640 kb on - strandat 268.640 kb on - strandat 268.640 kb on - strandat 269.122 kb on + strand, within Rru_A0217at 269.122 kb on + strand, within Rru_A0217at 269.122 kb on + strand, within Rru_A0217at 269.122 kb on + strand, within Rru_A0217at 269.122 kb on + strand, within Rru_A0217at 269.122 kb on + strand, within Rru_A0217at 269.122 kb on + strand, within Rru_A0217at 269.122 kb on + strand, within Rru_A0217at 269.123 kb on - strand, within Rru_A0217at 269.123 kb on - strand, within Rru_A0217at 269.123 kb on - strand, within Rru_A0217at 269.123 kb on - strand, within Rru_A0217at 269.123 kb on - strand, within Rru_A0217at 269.123 kb on - strand, within Rru_A0217at 269.123 kb on - strand, within Rru_A0217at 269.123 kb on - strand, within Rru_A0217at 269.128 kb on + strand, within Rru_A0217at 269.128 kb on + strand, within Rru_A0217at 269.129 kb on - strand, within Rru_A0217at 269.129 kb on - strand, within Rru_A0217at 269.215 kb on + strand, within Rru_A0217at 269.215 kb on + strand, within Rru_A0217at 269.215 kb on + strand, within Rru_A0217at 269.215 kb on + strand, within Rru_A0217at 269.215 kb on + strand, within Rru_A0217at 269.215 kb on + strand, within Rru_A0217at 269.216 kb on - strand, within Rru_A0217at 269.226 kb on + strand, within Rru_A0217at 269.226 kb on + strand, within Rru_A0217at 269.226 kb on + strand, within Rru_A0217at 269.226 kb on + strand, within Rru_A0217at 269.226 kb on + strand, within Rru_A0217at 269.227 kb on - strand, within Rru_A0217at 269.227 kb on - strand, within Rru_A0217at 269.227 kb on - strand, within Rru_A0217at 269.227 kb on - strand, within Rru_A0217at 269.377 kb on + strand, within Rru_A0217at 269.431 kb on + strand, within Rru_A0217at 269.431 kb on + strand, within Rru_A0217at 269.473 kb on + strand, within Rru_A0217at 269.473 kb on + strand, within Rru_A0217at 269.474 kb on - strand, within Rru_A0217at 269.497 kb on + strand, within Rru_A0217at 269.497 kb on + strand, within Rru_A0217

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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267,290 - Rru_A0215 0.24 -0.1
267,337 + Rru_A0215 0.29 +0.3
267,337 + Rru_A0215 0.29 +0.8
267,338 - Rru_A0215 0.29 -0.3
267,338 - Rru_A0215 0.29 +0.2
267,338 - Rru_A0215 0.29 +0.8
267,338 - Rru_A0215 0.29 +0.9
267,695 + Rru_A0215 0.64 +0.0
267,695 + Rru_A0215 0.64 +0.2
267,695 + Rru_A0215 0.64 +0.4
267,695 + Rru_A0215 0.64 +1.5
267,696 - Rru_A0215 0.64 +0.3
267,696 - Rru_A0215 0.64 +0.5
267,696 - Rru_A0215 0.64 +0.0
267,696 - Rru_A0215 0.64 +1.1
267,697 + Rru_A0215 0.65 +0.8
267,698 - Rru_A0215 0.65 +0.0
267,729 - Rru_A0215 0.68 +0.4
267,730 + Rru_A0215 0.68 -0.4
267,730 + Rru_A0215 0.68 +0.0
267,730 + Rru_A0215 0.68 +0.0
267,730 + Rru_A0215 0.68 +0.0
267,731 - Rru_A0215 0.68 +0.0
267,731 - Rru_A0215 0.68 +0.0
267,941 + Rru_A0215 0.89 -0.0
267,941 + Rru_A0215 0.89 +0.3
267,941 + Rru_A0215 0.89 +0.2
267,942 - Rru_A0215 0.89 +1.0
267,942 - Rru_A0215 0.89 +0.0
267,942 - Rru_A0215 0.89 -1.0
268,495 + Rru_A0216 0.62 -0.1
268,495 + Rru_A0216 0.62 -0.3
268,495 + Rru_A0216 0.62 -1.0
268,496 - Rru_A0216 0.62 -0.1
268,555 + Rru_A0216 0.74 +0.0
268,556 - Rru_A0216 0.74 -1.0
268,639 + +1.6
268,639 + +0.0
268,639 + +1.3
268,639 + +0.0
268,639 + +1.7
268,639 + +0.0
268,639 + +1.0
268,640 - +0.7
268,640 - +0.0
268,640 - +0.1
268,640 - +0.0
269,122 + Rru_A0217 0.25 -1.0
269,122 + Rru_A0217 0.25 -3.3
269,122 + Rru_A0217 0.25 -2.7
269,122 + Rru_A0217 0.25 -1.3
269,122 + Rru_A0217 0.25 -1.3
269,122 + Rru_A0217 0.25 +0.0
269,122 + Rru_A0217 0.25 -2.6
269,122 + Rru_A0217 0.25 -1.6
269,123 - Rru_A0217 0.26 -2.5
269,123 - Rru_A0217 0.26 -1.4
269,123 - Rru_A0217 0.26 +0.0
269,123 - Rru_A0217 0.26 +0.0
269,123 - Rru_A0217 0.26 -4.2
269,123 - Rru_A0217 0.26 -2.3
269,123 - Rru_A0217 0.26 -2.6
269,123 - Rru_A0217 0.26 -1.0
269,128 + Rru_A0217 0.26 -3.8
269,128 + Rru_A0217 0.26 -3.5
269,129 - Rru_A0217 0.26 +0.0
269,129 - Rru_A0217 0.26 -2.7
269,215 + Rru_A0217 0.35 +0.0
269,215 + Rru_A0217 0.35 -1.2
269,215 + Rru_A0217 0.35 -2.3
269,215 + Rru_A0217 0.35 +0.0
269,215 + Rru_A0217 0.35 -2.4
269,215 + Rru_A0217 0.35 -2.3
269,216 - Rru_A0217 0.35 -4.1
269,226 + Rru_A0217 0.36 +0.0
269,226 + Rru_A0217 0.36 -1.3
269,226 + Rru_A0217 0.36 -2.8
269,226 + Rru_A0217 0.36 +0.0
269,226 + Rru_A0217 0.36 -0.3
269,227 - Rru_A0217 0.36 -1.6
269,227 - Rru_A0217 0.36 -1.8
269,227 - Rru_A0217 0.36 -2.1
269,227 - Rru_A0217 0.36 -1.8
269,377 + Rru_A0217 0.52 -2.6
269,431 + Rru_A0217 0.57 -2.6
269,431 + Rru_A0217 0.57 -1.6
269,473 + Rru_A0217 0.61 -1.3
269,473 + Rru_A0217 0.61 -1.6
269,474 - Rru_A0217 0.61 -1.3
269,497 + Rru_A0217 0.64 -2.8
269,497 + Rru_A0217 0.64 +0.0

Or see this region's nucleotide sequence