Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0214

Experiment: acetate; Light intensity 9 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0213 and Rru_A0214 are separated by 402 nucleotidesRru_A0214 and Rru_A0215 are separated by 30 nucleotides Rru_A0213: Rru_A0213 - hypothetical protein (NCBI), at 264,396 to 265,736 _A0213 Rru_A0214: Rru_A0214 - MutT/nudix family protein (NCBI), at 266,139 to 267,017 _A0214 Rru_A0215: Rru_A0215 - Protein of unknown function DUF6, transmembrane (NCBI), at 267,048 to 268,052 _A0215 Position (kb) 266 267 268Strain fitness (log2 ratio) -1 0 1 2at 265.155 kb on - strand, within Rru_A0213at 265.258 kb on + strand, within Rru_A0213at 265.259 kb on - strand, within Rru_A0213at 265.259 kb on - strand, within Rru_A0213at 265.807 kb on + strandat 265.808 kb on - strandat 265.816 kb on - strandat 265.826 kb on - strandat 265.849 kb on + strandat 265.849 kb on + strandat 266.158 kb on + strandat 266.158 kb on + strandat 266.158 kb on + strandat 266.487 kb on + strand, within Rru_A0214at 266.488 kb on - strand, within Rru_A0214at 266.488 kb on - strand, within Rru_A0214at 266.562 kb on - strand, within Rru_A0214at 266.591 kb on + strand, within Rru_A0214at 266.591 kb on + strand, within Rru_A0214at 266.591 kb on + strand, within Rru_A0214at 266.715 kb on + strand, within Rru_A0214at 266.715 kb on + strand, within Rru_A0214at 266.716 kb on - strand, within Rru_A0214at 266.716 kb on - strand, within Rru_A0214at 266.716 kb on - strand, within Rru_A0214at 266.716 kb on - strand, within Rru_A0214at 266.716 kb on - strand, within Rru_A0214at 266.716 kb on - strand, within Rru_A0214at 266.716 kb on - strand, within Rru_A0214at 266.763 kb on + strand, within Rru_A0214at 266.763 kb on + strand, within Rru_A0214at 266.763 kb on + strand, within Rru_A0214at 266.763 kb on + strand, within Rru_A0214at 266.764 kb on - strand, within Rru_A0214at 266.764 kb on - strand, within Rru_A0214at 266.799 kb on - strand, within Rru_A0214at 267.290 kb on - strand, within Rru_A0215at 267.337 kb on + strand, within Rru_A0215at 267.337 kb on + strand, within Rru_A0215at 267.338 kb on - strand, within Rru_A0215at 267.338 kb on - strand, within Rru_A0215at 267.338 kb on - strand, within Rru_A0215at 267.338 kb on - strand, within Rru_A0215at 267.695 kb on + strand, within Rru_A0215at 267.695 kb on + strand, within Rru_A0215at 267.695 kb on + strand, within Rru_A0215at 267.695 kb on + strand, within Rru_A0215at 267.696 kb on - strand, within Rru_A0215at 267.696 kb on - strand, within Rru_A0215at 267.696 kb on - strand, within Rru_A0215at 267.696 kb on - strand, within Rru_A0215at 267.697 kb on + strand, within Rru_A0215at 267.698 kb on - strand, within Rru_A0215at 267.729 kb on - strand, within Rru_A0215at 267.730 kb on + strand, within Rru_A0215at 267.730 kb on + strand, within Rru_A0215at 267.730 kb on + strand, within Rru_A0215at 267.730 kb on + strand, within Rru_A0215at 267.731 kb on - strand, within Rru_A0215at 267.731 kb on - strand, within Rru_A0215at 267.941 kb on + strand, within Rru_A0215at 267.941 kb on + strand, within Rru_A0215at 267.941 kb on + strand, within Rru_A0215at 267.942 kb on - strand, within Rru_A0215at 267.942 kb on - strand, within Rru_A0215at 267.942 kb on - strand, within Rru_A0215

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
remove
265,155 - Rru_A0213 0.57 +0.0
265,258 + Rru_A0213 0.64 +0.0
265,259 - Rru_A0213 0.64 +0.4
265,259 - Rru_A0213 0.64 +0.0
265,807 + -1.0
265,808 - -1.0
265,816 - +0.3
265,826 - +0.1
265,849 + +0.0
265,849 + +0.0
266,158 + +0.0
266,158 + +2.6
266,158 + +1.7
266,487 + Rru_A0214 0.40 +1.4
266,488 - Rru_A0214 0.40 +0.0
266,488 - Rru_A0214 0.40 +0.6
266,562 - Rru_A0214 0.48 +0.0
266,591 + Rru_A0214 0.51 +0.0
266,591 + Rru_A0214 0.51 +0.0
266,591 + Rru_A0214 0.51 +1.1
266,715 + Rru_A0214 0.66 +0.0
266,715 + Rru_A0214 0.66 +0.4
266,716 - Rru_A0214 0.66 -1.6
266,716 - Rru_A0214 0.66 +0.0
266,716 - Rru_A0214 0.66 +0.0
266,716 - Rru_A0214 0.66 -1.0
266,716 - Rru_A0214 0.66 -0.4
266,716 - Rru_A0214 0.66 +2.2
266,716 - Rru_A0214 0.66 -1.6
266,763 + Rru_A0214 0.71 +0.9
266,763 + Rru_A0214 0.71 +0.5
266,763 + Rru_A0214 0.71 +0.0
266,763 + Rru_A0214 0.71 +2.6
266,764 - Rru_A0214 0.71 +0.0
266,764 - Rru_A0214 0.71 +1.5
266,799 - Rru_A0214 0.75 +1.0
267,290 - Rru_A0215 0.24 -0.1
267,337 + Rru_A0215 0.29 +0.3
267,337 + Rru_A0215 0.29 +0.8
267,338 - Rru_A0215 0.29 -0.3
267,338 - Rru_A0215 0.29 +0.2
267,338 - Rru_A0215 0.29 +0.8
267,338 - Rru_A0215 0.29 +0.9
267,695 + Rru_A0215 0.64 +0.0
267,695 + Rru_A0215 0.64 +0.2
267,695 + Rru_A0215 0.64 +0.4
267,695 + Rru_A0215 0.64 +1.5
267,696 - Rru_A0215 0.64 +0.3
267,696 - Rru_A0215 0.64 +0.5
267,696 - Rru_A0215 0.64 +0.0
267,696 - Rru_A0215 0.64 +1.1
267,697 + Rru_A0215 0.65 +0.8
267,698 - Rru_A0215 0.65 +0.0
267,729 - Rru_A0215 0.68 +0.4
267,730 + Rru_A0215 0.68 -0.4
267,730 + Rru_A0215 0.68 +0.0
267,730 + Rru_A0215 0.68 +0.0
267,730 + Rru_A0215 0.68 +0.0
267,731 - Rru_A0215 0.68 +0.0
267,731 - Rru_A0215 0.68 +0.0
267,941 + Rru_A0215 0.89 -0.0
267,941 + Rru_A0215 0.89 +0.3
267,941 + Rru_A0215 0.89 +0.2
267,942 - Rru_A0215 0.89 +1.0
267,942 - Rru_A0215 0.89 +0.0
267,942 - Rru_A0215 0.89 -1.0

Or see this region's nucleotide sequence