Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0209 and Rru_A0210 are separated by 217 nucleotides Rru_A0210 and Rru_A0211 are separated by 147 nucleotides
Rru_A0209: Rru_A0209 - Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B (NCBI), at 261,647 to 262,486
_A0209
Rru_A0210: Rru_A0210 - Ribosomal protein L28 (NCBI), at 262,704 to 263,003
_A0210
Rru_A0211: Rru_A0211 - hypothetical protein (NCBI), at 263,151 to 263,912
_A0211
Position (kb) 262
263
264 Strain fitness (log2 ratio) -1
0
1
2 at 261.792 kb on + strand, within Rru_A0209 at 261.792 kb on + strand, within Rru_A0209 at 261.792 kb on + strand, within Rru_A0209 at 261.792 kb on + strand, within Rru_A0209 at 261.792 kb on + strand, within Rru_A0209 at 261.793 kb on - strand, within Rru_A0209 at 261.793 kb on - strand, within Rru_A0209 at 261.793 kb on - strand, within Rru_A0209 at 261.793 kb on - strand, within Rru_A0209 at 261.974 kb on - strand, within Rru_A0209 at 262.404 kb on + strand at 262.405 kb on - strand at 262.405 kb on - strand at 262.506 kb on + strand at 262.507 kb on - strand at 262.580 kb on - strand at 262.580 kb on - strand at 262.580 kb on - strand at 263.061 kb on - strand at 263.087 kb on - strand at 263.431 kb on + strand, within Rru_A0211 at 263.432 kb on - strand, within Rru_A0211 at 263.432 kb on - strand, within Rru_A0211 at 263.702 kb on + strand, within Rru_A0211 at 263.702 kb on + strand, within Rru_A0211 at 263.702 kb on + strand, within Rru_A0211 at 263.703 kb on - strand, within Rru_A0211 at 263.703 kb on - strand, within Rru_A0211 at 263.973 kb on + strand at 263.980 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 261,792 + Rru_A0209 0.17 +0.7 261,792 + Rru_A0209 0.17 +0.8 261,792 + Rru_A0209 0.17 +0.6 261,792 + Rru_A0209 0.17 +1.5 261,792 + Rru_A0209 0.17 +0.9 261,793 - Rru_A0209 0.17 +0.5 261,793 - Rru_A0209 0.17 +1.2 261,793 - Rru_A0209 0.17 +0.3 261,793 - Rru_A0209 0.17 +0.2 261,974 - Rru_A0209 0.39 -0.0 262,404 + -0.0 262,405 - -0.0 262,405 - -0.0 262,506 + -0.0 262,507 - -0.0 262,580 - +0.7 262,580 - -0.0 262,580 - +0.2 263,061 - +0.0 263,087 - -1.6 263,431 + Rru_A0211 0.37 +1.8 263,432 - Rru_A0211 0.37 +0.0 263,432 - Rru_A0211 0.37 +0.8 263,702 + Rru_A0211 0.72 +0.8 263,702 + Rru_A0211 0.72 +0.5 263,702 + Rru_A0211 0.72 +0.0 263,703 - Rru_A0211 0.72 +0.0 263,703 - Rru_A0211 0.72 +0.0 263,973 + +0.7 263,980 - -1.0
Or see this region's nucleotide sequence