Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0207

Experiment: acetate; Light intensity 9 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0206 and Rru_A0207 are separated by 43 nucleotidesRru_A0207 and Rru_A0208 are separated by 25 nucleotides Rru_A0206: Rru_A0206 - Cobalt chelatase, pCobS small subunit (NCBI), at 255,074 to 256,063 _A0206 Rru_A0207: Rru_A0207 - Cobalt chelatase, CobT subunit (NCBI), at 256,107 to 258,008 _A0207 Rru_A0208: Rru_A0208 - SNF2 helicase-related protein (NCBI), at 258,034 to 261,663 _A0208 Position (kb) 256 257 258 259Strain fitness (log2 ratio) -2 -1 0 1 2at 255.212 kb on + strand, within Rru_A0206at 255.213 kb on - strand, within Rru_A0206at 255.287 kb on + strand, within Rru_A0206at 255.500 kb on + strand, within Rru_A0206at 255.605 kb on + strand, within Rru_A0206at 255.605 kb on + strand, within Rru_A0206at 255.729 kb on - strand, within Rru_A0206at 255.729 kb on - strand, within Rru_A0206at 255.999 kb on - strandat 256.115 kb on + strandat 256.115 kb on + strandat 256.116 kb on - strandat 256.116 kb on - strandat 256.116 kb on - strandat 256.227 kb on + strandat 256.228 kb on - strandat 256.228 kb on - strandat 256.230 kb on - strandat 257.292 kb on + strand, within Rru_A0207at 257.293 kb on - strand, within Rru_A0207at 257.293 kb on - strand, within Rru_A0207at 257.293 kb on - strand, within Rru_A0207at 257.295 kb on - strand, within Rru_A0207at 257.305 kb on - strand, within Rru_A0207at 257.360 kb on + strand, within Rru_A0207at 257.562 kb on - strand, within Rru_A0207at 257.568 kb on + strand, within Rru_A0207at 257.569 kb on - strand, within Rru_A0207at 257.569 kb on - strand, within Rru_A0207at 257.569 kb on - strand, within Rru_A0207at 257.569 kb on - strand, within Rru_A0207at 257.569 kb on - strand, within Rru_A0207at 257.778 kb on + strand, within Rru_A0207at 258.106 kb on + strandat 258.106 kb on + strandat 258.107 kb on - strandat 258.107 kb on - strandat 258.107 kb on - strandat 258.129 kb on + strandat 258.129 kb on + strandat 258.130 kb on - strandat 258.193 kb on + strandat 258.193 kb on + strandat 258.193 kb on + strandat 258.193 kb on + strandat 258.193 kb on + strandat 258.193 kb on + strandat 258.193 kb on + strandat 258.193 kb on + strandat 258.194 kb on - strandat 258.194 kb on - strandat 258.194 kb on - strandat 258.207 kb on + strandat 258.208 kb on - strandat 258.247 kb on + strandat 258.247 kb on + strandat 258.247 kb on + strandat 258.248 kb on - strandat 258.297 kb on - strandat 258.297 kb on - strandat 258.297 kb on - strandat 258.297 kb on - strandat 258.297 kb on - strandat 258.297 kb on - strandat 258.460 kb on + strand, within Rru_A0208at 258.490 kb on + strand, within Rru_A0208at 258.490 kb on + strand, within Rru_A0208at 258.490 kb on + strand, within Rru_A0208at 258.490 kb on + strand, within Rru_A0208at 258.490 kb on + strand, within Rru_A0208at 258.490 kb on + strand, within Rru_A0208at 258.491 kb on - strand, within Rru_A0208at 258.491 kb on - strand, within Rru_A0208at 258.491 kb on - strand, within Rru_A0208at 258.491 kb on - strand, within Rru_A0208at 258.491 kb on - strand, within Rru_A0208at 258.691 kb on + strand, within Rru_A0208at 258.692 kb on - strand, within Rru_A0208at 258.994 kb on + strand, within Rru_A0208at 258.994 kb on + strand, within Rru_A0208at 258.994 kb on + strand, within Rru_A0208at 258.994 kb on + strand, within Rru_A0208at 258.994 kb on + strand, within Rru_A0208at 258.994 kb on + strand, within Rru_A0208at 258.994 kb on + strand, within Rru_A0208at 258.995 kb on - strand, within Rru_A0208at 258.995 kb on - strand, within Rru_A0208at 258.995 kb on - strand, within Rru_A0208at 258.995 kb on - strand, within Rru_A0208at 258.995 kb on - strand, within Rru_A0208at 258.995 kb on - strand, within Rru_A0208at 258.995 kb on - strand, within Rru_A0208at 258.995 kb on - strand, within Rru_A0208at 258.995 kb on - strand, within Rru_A0208at 258.996 kb on + strand, within Rru_A0208at 258.996 kb on + strand, within Rru_A0208

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
remove
255,212 + Rru_A0206 0.14 +0.0
255,213 - Rru_A0206 0.14 +0.0
255,287 + Rru_A0206 0.22 +0.0
255,500 + Rru_A0206 0.43 +0.0
255,605 + Rru_A0206 0.54 +0.0
255,605 + Rru_A0206 0.54 -2.0
255,729 - Rru_A0206 0.66 +0.0
255,729 - Rru_A0206 0.66 +0.0
255,999 - +0.0
256,115 + +0.8
256,115 + -2.0
256,116 - +0.0
256,116 - +0.0
256,116 - +0.0
256,227 + +0.0
256,228 - +0.0
256,228 - +0.0
256,230 - +0.0
257,292 + Rru_A0207 0.62 -0.0
257,293 - Rru_A0207 0.62 -1.6
257,293 - Rru_A0207 0.62 -0.0
257,293 - Rru_A0207 0.62 -0.0
257,295 - Rru_A0207 0.62 -0.0
257,305 - Rru_A0207 0.63 -0.0
257,360 + Rru_A0207 0.66 -0.0
257,562 - Rru_A0207 0.76 -1.0
257,568 + Rru_A0207 0.77 -0.0
257,569 - Rru_A0207 0.77 -0.0
257,569 - Rru_A0207 0.77 -0.0
257,569 - Rru_A0207 0.77 -0.0
257,569 - Rru_A0207 0.77 -2.3
257,569 - Rru_A0207 0.77 -0.0
257,778 + Rru_A0207 0.88 -1.0
258,106 + -0.1
258,106 + +0.5
258,107 - +1.4
258,107 - -0.0
258,107 - -0.3
258,129 + -0.0
258,129 + +0.6
258,130 - -0.0
258,193 + +1.3
258,193 + +0.6
258,193 + -0.0
258,193 + -1.6
258,193 + -0.0
258,193 + -0.0
258,193 + -0.0
258,193 + -0.3
258,194 - -0.0
258,194 - -0.0
258,194 - -0.0
258,207 + -0.0
258,208 - -0.0
258,247 + -0.0
258,247 + +0.6
258,247 + +0.5
258,248 - -0.0
258,297 - -0.0
258,297 - +0.2
258,297 - +0.4
258,297 - +0.7
258,297 - +0.7
258,297 - +0.7
258,460 + Rru_A0208 0.12 -0.4
258,490 + Rru_A0208 0.13 +0.7
258,490 + Rru_A0208 0.13 +2.6
258,490 + Rru_A0208 0.13 -0.0
258,490 + Rru_A0208 0.13 -0.0
258,490 + Rru_A0208 0.13 +0.5
258,490 + Rru_A0208 0.13 +0.9
258,491 - Rru_A0208 0.13 +0.5
258,491 - Rru_A0208 0.13 -0.3
258,491 - Rru_A0208 0.13 +0.8
258,491 - Rru_A0208 0.13 +1.1
258,491 - Rru_A0208 0.13 -0.3
258,691 + Rru_A0208 0.18 -0.0
258,692 - Rru_A0208 0.18 -0.0
258,994 + Rru_A0208 0.26 +0.5
258,994 + Rru_A0208 0.26 -0.0
258,994 + Rru_A0208 0.26 +0.8
258,994 + Rru_A0208 0.26 -0.0
258,994 + Rru_A0208 0.26 +0.9
258,994 + Rru_A0208 0.26 -0.2
258,994 + Rru_A0208 0.26 +1.0
258,995 - Rru_A0208 0.26 -0.2
258,995 - Rru_A0208 0.26 +0.4
258,995 - Rru_A0208 0.26 +0.7
258,995 - Rru_A0208 0.26 +0.8
258,995 - Rru_A0208 0.26 +0.1
258,995 - Rru_A0208 0.26 +0.4
258,995 - Rru_A0208 0.26 +0.2
258,995 - Rru_A0208 0.26 -0.0
258,995 - Rru_A0208 0.26 +1.0
258,996 + Rru_A0208 0.27 +0.7
258,996 + Rru_A0208 0.27 -0.0

Or see this region's nucleotide sequence