Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0193

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0192 and Rru_A0193 are separated by 658 nucleotidesRru_A0193 and Rru_A0194 are separated by 220 nucleotidesRru_A0194 and Rru_A0195 are separated by 226 nucleotides Rru_A0192: Rru_A0192 - Multi antimicrobial extrusion protein MatE (NCBI), at 233,826 to 235,253 _A0192 Rru_A0193: Rru_A0193 - Beta-ketoacyl synthase (NCBI), at 235,912 to 237,135 _A0193 Rru_A0194: Rru_A0194 - hypothetical protein (NCBI), at 237,356 to 237,643 _A0194 Rru_A0195: Rru_A0195 - hypothetical protein (NCBI), at 237,870 to 243,644 _A0195 Position (kb) 235 236 237 238Strain fitness (log2 ratio) -1 0 1 2at 235.068 kb on + strand, within Rru_A0192at 235.069 kb on - strand, within Rru_A0192at 235.125 kb on + strandat 235.190 kb on - strandat 235.190 kb on - strandat 235.190 kb on - strandat 235.190 kb on - strandat 235.190 kb on - strandat 235.252 kb on - strandat 235.525 kb on + strandat 235.525 kb on + strandat 235.525 kb on + strandat 235.821 kb on + strandat 235.822 kb on - strandat 235.837 kb on + strandat 235.838 kb on - strandat 235.838 kb on - strandat 235.838 kb on - strandat 235.838 kb on - strandat 235.963 kb on - strandat 236.396 kb on + strand, within Rru_A0193at 236.546 kb on + strand, within Rru_A0193at 236.774 kb on + strand, within Rru_A0193at 236.775 kb on - strand, within Rru_A0193at 236.775 kb on - strand, within Rru_A0193at 236.775 kb on - strand, within Rru_A0193at 237.154 kb on - strandat 237.157 kb on + strandat 237.158 kb on - strandat 237.159 kb on + strandat 237.159 kb on + strandat 237.211 kb on + strandat 237.226 kb on + strandat 237.641 kb on + strandat 237.668 kb on - strandat 237.693 kb on + strandat 237.802 kb on + strandat 237.802 kb on + strandat 237.802 kb on + strandat 237.802 kb on + strandat 237.803 kb on - strandat 237.803 kb on - strandat 237.803 kb on - strandat 237.803 kb on - strandat 237.803 kb on - strandat 237.879 kb on + strandat 237.879 kb on + strandat 237.879 kb on + strandat 237.879 kb on + strandat 237.880 kb on - strandat 237.880 kb on - strandat 237.880 kb on - strandat 237.958 kb on - strandat 237.958 kb on - strandat 237.963 kb on + strandat 237.963 kb on + strandat 237.964 kb on - strandat 237.964 kb on - strandat 238.029 kb on + strandat 238.098 kb on + strandat 238.099 kb on - strandat 238.099 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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235,068 + Rru_A0192 0.87 +0.0
235,069 - Rru_A0192 0.87 -0.4
235,125 + +0.6
235,190 - +0.3
235,190 - +0.7
235,190 - -0.3
235,190 - +0.0
235,190 - -1.6
235,252 - +0.0
235,525 + +0.1
235,525 + +0.6
235,525 + +0.0
235,821 + +0.7
235,822 - +0.9
235,837 + +1.0
235,838 - +0.0
235,838 - +1.1
235,838 - +1.0
235,838 - +0.0
235,963 - +0.0
236,396 + Rru_A0193 0.40 -0.6
236,546 + Rru_A0193 0.52 +0.3
236,774 + Rru_A0193 0.70 +0.0
236,775 - Rru_A0193 0.71 +0.5
236,775 - Rru_A0193 0.71 +0.0
236,775 - Rru_A0193 0.71 -0.9
237,154 - +0.4
237,157 + +0.0
237,158 - +0.2
237,159 + -0.5
237,159 + +0.0
237,211 + +0.0
237,226 + +1.1
237,641 + +0.0
237,668 - +0.4
237,693 + +0.7
237,802 + +0.0
237,802 + -0.2
237,802 + +0.0
237,802 + +0.0
237,803 - +0.4
237,803 - +0.0
237,803 - +0.3
237,803 - +1.0
237,803 - +0.4
237,879 + +0.7
237,879 + +1.2
237,879 + +0.0
237,879 + +2.2
237,880 - +0.6
237,880 - +1.4
237,880 - +0.7
237,958 - +0.7
237,958 - +1.4
237,963 + +0.1
237,963 + +0.0
237,964 - +0.0
237,964 - +0.0
238,029 + +0.5
238,098 + -1.0
238,099 - +0.0
238,099 - +0.0

Or see this region's nucleotide sequence