Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0192 and Rru_A0193 are separated by 658 nucleotides Rru_A0193 and Rru_A0194 are separated by 220 nucleotides Rru_A0194 and Rru_A0195 are separated by 226 nucleotides
Rru_A0192: Rru_A0192 - Multi antimicrobial extrusion protein MatE (NCBI), at 233,826 to 235,253
_A0192
Rru_A0193: Rru_A0193 - Beta-ketoacyl synthase (NCBI), at 235,912 to 237,135
_A0193
Rru_A0194: Rru_A0194 - hypothetical protein (NCBI), at 237,356 to 237,643
_A0194
Rru_A0195: Rru_A0195 - hypothetical protein (NCBI), at 237,870 to 243,644
_A0195
Position (kb)
235
236
237
238 Strain fitness (log2 ratio)
-1
0
1
2 at 235.068 kb on + strand, within Rru_A0192 at 235.069 kb on - strand, within Rru_A0192 at 235.125 kb on + strand at 235.190 kb on - strand at 235.190 kb on - strand at 235.190 kb on - strand at 235.190 kb on - strand at 235.190 kb on - strand at 235.252 kb on - strand at 235.525 kb on + strand at 235.525 kb on + strand at 235.525 kb on + strand at 235.821 kb on + strand at 235.822 kb on - strand at 235.837 kb on + strand at 235.838 kb on - strand at 235.838 kb on - strand at 235.838 kb on - strand at 235.838 kb on - strand at 235.963 kb on - strand at 236.396 kb on + strand, within Rru_A0193 at 236.546 kb on + strand, within Rru_A0193 at 236.774 kb on + strand, within Rru_A0193 at 236.775 kb on - strand, within Rru_A0193 at 236.775 kb on - strand, within Rru_A0193 at 236.775 kb on - strand, within Rru_A0193 at 237.154 kb on - strand at 237.157 kb on + strand at 237.158 kb on - strand at 237.159 kb on + strand at 237.159 kb on + strand at 237.211 kb on + strand at 237.226 kb on + strand at 237.641 kb on + strand at 237.668 kb on - strand at 237.693 kb on + strand at 237.802 kb on + strand at 237.802 kb on + strand at 237.802 kb on + strand at 237.802 kb on + strand at 237.803 kb on - strand at 237.803 kb on - strand at 237.803 kb on - strand at 237.803 kb on - strand at 237.803 kb on - strand at 237.879 kb on + strand at 237.879 kb on + strand at 237.879 kb on + strand at 237.879 kb on + strand at 237.880 kb on - strand at 237.880 kb on - strand at 237.880 kb on - strand at 237.958 kb on - strand at 237.958 kb on - strand at 237.963 kb on + strand at 237.963 kb on + strand at 237.964 kb on - strand at 237.964 kb on - strand at 238.029 kb on + strand at 238.098 kb on + strand at 238.099 kb on - strand at 238.099 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 235,068 + Rru_A0192 0.87 +0.0 235,069 - Rru_A0192 0.87 -0.4 235,125 + +0.6 235,190 - +0.3 235,190 - +0.7 235,190 - -0.3 235,190 - +0.0 235,190 - -1.6 235,252 - +0.0 235,525 + +0.1 235,525 + +0.6 235,525 + +0.0 235,821 + +0.7 235,822 - +0.9 235,837 + +1.0 235,838 - +0.0 235,838 - +1.1 235,838 - +1.0 235,838 - +0.0 235,963 - +0.0 236,396 + Rru_A0193 0.40 -0.6 236,546 + Rru_A0193 0.52 +0.3 236,774 + Rru_A0193 0.70 +0.0 236,775 - Rru_A0193 0.71 +0.5 236,775 - Rru_A0193 0.71 +0.0 236,775 - Rru_A0193 0.71 -0.9 237,154 - +0.4 237,157 + +0.0 237,158 - +0.2 237,159 + -0.5 237,159 + +0.0 237,211 + +0.0 237,226 + +1.1 237,641 + +0.0 237,668 - +0.4 237,693 + +0.7 237,802 + +0.0 237,802 + -0.2 237,802 + +0.0 237,802 + +0.0 237,803 - +0.4 237,803 - +0.0 237,803 - +0.3 237,803 - +1.0 237,803 - +0.4 237,879 + +0.7 237,879 + +1.2 237,879 + +0.0 237,879 + +2.2 237,880 - +0.6 237,880 - +1.4 237,880 - +0.7 237,958 - +0.7 237,958 - +1.4 237,963 + +0.1 237,963 + +0.0 237,964 - +0.0 237,964 - +0.0 238,029 + +0.5 238,098 + -1.0 238,099 - +0.0 238,099 - +0.0
Or see this region's nucleotide sequence