Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0189

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0188 and Rru_A0189 overlap by 4 nucleotidesRru_A0189 and Rru_A0190 are separated by 227 nucleotides Rru_A0188: Rru_A0188 - ABC transporter, transmembrane region (NCBI), at 227,085 to 228,815 _A0188 Rru_A0189: Rru_A0189 - ABC transporter, transmembrane region (NCBI), at 228,812 to 230,593 _A0189 Rru_A0190: Rru_A0190 - TonB-dependent receptor (NCBI), at 230,821 to 232,953 _A0190 Position (kb) 228 229 230 231Strain fitness (log2 ratio) -3 -2 -1 0 1at 227.908 kb on + strand, within Rru_A0188at 227.908 kb on + strand, within Rru_A0188at 227.908 kb on + strand, within Rru_A0188at 227.908 kb on + strand, within Rru_A0188at 227.909 kb on - strand, within Rru_A0188at 227.909 kb on - strand, within Rru_A0188at 227.909 kb on - strand, within Rru_A0188at 227.909 kb on - strand, within Rru_A0188at 227.909 kb on - strand, within Rru_A0188at 227.909 kb on - strand, within Rru_A0188at 227.909 kb on - strand, within Rru_A0188at 227.953 kb on + strand, within Rru_A0188at 227.954 kb on - strand, within Rru_A0188at 227.954 kb on - strand, within Rru_A0188at 227.954 kb on - strand, within Rru_A0188at 227.987 kb on - strand, within Rru_A0188at 228.209 kb on - strand, within Rru_A0188at 228.209 kb on - strand, within Rru_A0188at 228.476 kb on + strand, within Rru_A0188at 228.476 kb on + strand, within Rru_A0188at 228.551 kb on + strand, within Rru_A0188at 228.551 kb on + strand, within Rru_A0188at 228.551 kb on + strand, within Rru_A0188at 228.551 kb on + strand, within Rru_A0188at 228.552 kb on - strand, within Rru_A0188at 228.552 kb on - strand, within Rru_A0188at 228.552 kb on - strand, within Rru_A0188at 228.552 kb on - strand, within Rru_A0188at 228.697 kb on + strandat 228.697 kb on + strandat 228.697 kb on + strandat 228.697 kb on + strandat 228.904 kb on - strandat 229.231 kb on - strand, within Rru_A0189at 229.325 kb on + strand, within Rru_A0189at 229.325 kb on + strand, within Rru_A0189at 229.407 kb on + strand, within Rru_A0189at 229.774 kb on + strand, within Rru_A0189at 229.774 kb on + strand, within Rru_A0189at 229.774 kb on + strand, within Rru_A0189at 229.774 kb on + strand, within Rru_A0189at 229.774 kb on + strand, within Rru_A0189at 229.774 kb on + strand, within Rru_A0189at 229.774 kb on + strand, within Rru_A0189at 229.775 kb on - strand, within Rru_A0189at 229.910 kb on - strand, within Rru_A0189at 229.910 kb on - strand, within Rru_A0189at 229.910 kb on - strand, within Rru_A0189at 229.917 kb on + strand, within Rru_A0189at 230.040 kb on + strand, within Rru_A0189at 230.040 kb on + strand, within Rru_A0189at 230.040 kb on + strand, within Rru_A0189at 230.041 kb on - strand, within Rru_A0189at 230.041 kb on - strand, within Rru_A0189at 230.041 kb on - strand, within Rru_A0189at 230.073 kb on - strand, within Rru_A0189at 230.073 kb on - strand, within Rru_A0189at 230.131 kb on + strand, within Rru_A0189at 230.131 kb on + strand, within Rru_A0189at 230.131 kb on + strand, within Rru_A0189at 230.131 kb on + strand, within Rru_A0189at 230.132 kb on - strand, within Rru_A0189at 230.132 kb on - strand, within Rru_A0189at 230.132 kb on - strand, within Rru_A0189at 230.346 kb on + strand, within Rru_A0189at 230.484 kb on + strandat 230.485 kb on - strandat 230.570 kb on + strandat 230.822 kb on + strandat 230.891 kb on + strandat 230.897 kb on + strandat 230.897 kb on + strandat 230.897 kb on + strandat 230.898 kb on - strandat 230.927 kb on + strandat 230.999 kb on + strandat 230.999 kb on + strandat 230.999 kb on + strandat 230.999 kb on + strandat 230.999 kb on + strandat 230.999 kb on + strandat 231.000 kb on - strandat 231.000 kb on - strandat 231.000 kb on - strandat 231.000 kb on - strandat 231.098 kb on + strand, within Rru_A0190at 231.098 kb on + strand, within Rru_A0190at 231.116 kb on + strand, within Rru_A0190at 231.117 kb on - strand, within Rru_A0190at 231.195 kb on + strand, within Rru_A0190at 231.195 kb on + strand, within Rru_A0190at 231.196 kb on - strand, within Rru_A0190at 231.197 kb on + strand, within Rru_A0190at 231.197 kb on + strand, within Rru_A0190at 231.197 kb on + strand, within Rru_A0190at 231.197 kb on + strand, within Rru_A0190at 231.197 kb on + strand, within Rru_A0190at 231.197 kb on + strand, within Rru_A0190at 231.197 kb on + strand, within Rru_A0190at 231.198 kb on - strand, within Rru_A0190at 231.198 kb on - strand, within Rru_A0190at 231.198 kb on - strand, within Rru_A0190at 231.359 kb on + strand, within Rru_A0190at 231.359 kb on + strand, within Rru_A0190at 231.360 kb on - strand, within Rru_A0190at 231.362 kb on + strand, within Rru_A0190at 231.411 kb on - strand, within Rru_A0190at 231.422 kb on + strand, within Rru_A0190at 231.422 kb on + strand, within Rru_A0190at 231.456 kb on + strand, within Rru_A0190at 231.457 kb on - strand, within Rru_A0190at 231.457 kb on - strand, within Rru_A0190at 231.515 kb on + strand, within Rru_A0190at 231.516 kb on - strand, within Rru_A0190at 231.543 kb on + strand, within Rru_A0190at 231.563 kb on + strand, within Rru_A0190at 231.563 kb on + strand, within Rru_A0190at 231.564 kb on - strand, within Rru_A0190at 231.593 kb on + strand, within Rru_A0190at 231.593 kb on + strand, within Rru_A0190

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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227,908 + Rru_A0188 0.48 +0.3
227,908 + Rru_A0188 0.48 -0.5
227,908 + Rru_A0188 0.48 -0.9
227,908 + Rru_A0188 0.48 +0.0
227,909 - Rru_A0188 0.48 +1.5
227,909 - Rru_A0188 0.48 +0.2
227,909 - Rru_A0188 0.48 +0.4
227,909 - Rru_A0188 0.48 +0.0
227,909 - Rru_A0188 0.48 +0.0
227,909 - Rru_A0188 0.48 +0.2
227,909 - Rru_A0188 0.48 -0.4
227,953 + Rru_A0188 0.50 -1.0
227,954 - Rru_A0188 0.50 +0.2
227,954 - Rru_A0188 0.50 +0.2
227,954 - Rru_A0188 0.50 +0.0
227,987 - Rru_A0188 0.52 -0.6
228,209 - Rru_A0188 0.65 +0.0
228,209 - Rru_A0188 0.65 -0.5
228,476 + Rru_A0188 0.80 +0.1
228,476 + Rru_A0188 0.80 -0.4
228,551 + Rru_A0188 0.85 +0.7
228,551 + Rru_A0188 0.85 -1.0
228,551 + Rru_A0188 0.85 +0.2
228,551 + Rru_A0188 0.85 +0.0
228,552 - Rru_A0188 0.85 -0.8
228,552 - Rru_A0188 0.85 -0.4
228,552 - Rru_A0188 0.85 +0.0
228,552 - Rru_A0188 0.85 -0.5
228,697 + -0.6
228,697 + +0.7
228,697 + +0.0
228,697 + +0.0
228,904 - +0.0
229,231 - Rru_A0189 0.24 -0.7
229,325 + Rru_A0189 0.29 -0.1
229,325 + Rru_A0189 0.29 +0.0
229,407 + Rru_A0189 0.33 +0.1
229,774 + Rru_A0189 0.54 +0.0
229,774 + Rru_A0189 0.54 +1.1
229,774 + Rru_A0189 0.54 +0.0
229,774 + Rru_A0189 0.54 +0.5
229,774 + Rru_A0189 0.54 +0.3
229,774 + Rru_A0189 0.54 +0.2
229,774 + Rru_A0189 0.54 +0.3
229,775 - Rru_A0189 0.54 +0.0
229,910 - Rru_A0189 0.62 -0.0
229,910 - Rru_A0189 0.62 +0.0
229,910 - Rru_A0189 0.62 +0.0
229,917 + Rru_A0189 0.62 -0.1
230,040 + Rru_A0189 0.69 +0.0
230,040 + Rru_A0189 0.69 +0.0
230,040 + Rru_A0189 0.69 +0.0
230,041 - Rru_A0189 0.69 +0.0
230,041 - Rru_A0189 0.69 -1.0
230,041 - Rru_A0189 0.69 -1.0
230,073 - Rru_A0189 0.71 +0.2
230,073 - Rru_A0189 0.71 +0.0
230,131 + Rru_A0189 0.74 +0.0
230,131 + Rru_A0189 0.74 +0.1
230,131 + Rru_A0189 0.74 +0.7
230,131 + Rru_A0189 0.74 +0.0
230,132 - Rru_A0189 0.74 -3.0
230,132 - Rru_A0189 0.74 -1.0
230,132 - Rru_A0189 0.74 +0.0
230,346 + Rru_A0189 0.86 +0.0
230,484 + -0.1
230,485 - -0.5
230,570 + +0.0
230,822 + -0.0
230,891 + -0.2
230,897 + -0.0
230,897 + -0.2
230,897 + -0.0
230,898 - -0.0
230,927 + -0.0
230,999 + -0.0
230,999 + -0.1
230,999 + -0.7
230,999 + -0.5
230,999 + -0.0
230,999 + -0.0
231,000 - -0.3
231,000 - +0.7
231,000 - -0.0
231,000 - -0.1
231,098 + Rru_A0190 0.13 +0.4
231,098 + Rru_A0190 0.13 -0.0
231,116 + Rru_A0190 0.14 -0.0
231,117 - Rru_A0190 0.14 -1.2
231,195 + Rru_A0190 0.18 -1.0
231,195 + Rru_A0190 0.18 -0.0
231,196 - Rru_A0190 0.18 -0.0
231,197 + Rru_A0190 0.18 +0.6
231,197 + Rru_A0190 0.18 -1.6
231,197 + Rru_A0190 0.18 -0.1
231,197 + Rru_A0190 0.18 -0.1
231,197 + Rru_A0190 0.18 +0.4
231,197 + Rru_A0190 0.18 -0.1
231,197 + Rru_A0190 0.18 -0.0
231,198 - Rru_A0190 0.18 -0.4
231,198 - Rru_A0190 0.18 +0.2
231,198 - Rru_A0190 0.18 -0.0
231,359 + Rru_A0190 0.25 -0.0
231,359 + Rru_A0190 0.25 -0.0
231,360 - Rru_A0190 0.25 -0.0
231,362 + Rru_A0190 0.25 +0.5
231,411 - Rru_A0190 0.28 -0.0
231,422 + Rru_A0190 0.28 -0.0
231,422 + Rru_A0190 0.28 +0.1
231,456 + Rru_A0190 0.30 +0.5
231,457 - Rru_A0190 0.30 -0.0
231,457 - Rru_A0190 0.30 -0.2
231,515 + Rru_A0190 0.33 +0.4
231,516 - Rru_A0190 0.33 -1.1
231,543 + Rru_A0190 0.34 -0.1
231,563 + Rru_A0190 0.35 -0.0
231,563 + Rru_A0190 0.35 -0.0
231,564 - Rru_A0190 0.35 +0.2
231,593 + Rru_A0190 0.36 -0.3
231,593 + Rru_A0190 0.36 +0.2

Or see this region's nucleotide sequence