Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0187 and Rru_A0188 are separated by 493 nucleotides Rru_A0188 and Rru_A0189 overlap by 4 nucleotides
Rru_A0187: Rru_A0187 - hypothetical protein (NCBI), at 226,301 to 226,591
_A0187
Rru_A0188: Rru_A0188 - ABC transporter, transmembrane region (NCBI), at 227,085 to 228,815
_A0188
Rru_A0189: Rru_A0189 - ABC transporter, transmembrane region (NCBI), at 228,812 to 230,593
_A0189
Position (kb) 227
228
229 Strain fitness (log2 ratio) -1
0
1 at 226.105 kb on + strand at 226.106 kb on - strand at 226.143 kb on - strand at 226.165 kb on - strand at 226.176 kb on - strand at 226.256 kb on + strand at 226.399 kb on - strand, within Rru_A0187 at 226.413 kb on - strand, within Rru_A0187 at 226.413 kb on - strand, within Rru_A0187 at 226.413 kb on - strand, within Rru_A0187 at 226.534 kb on + strand, within Rru_A0187 at 226.589 kb on + strand at 226.594 kb on - strand at 226.676 kb on + strand at 226.676 kb on + strand at 226.677 kb on - strand at 226.677 kb on - strand at 226.681 kb on + strand at 226.681 kb on + strand at 226.681 kb on + strand at 227.019 kb on + strand at 227.019 kb on + strand at 227.030 kb on - strand at 227.032 kb on - strand at 227.064 kb on + strand at 227.065 kb on - strand at 227.126 kb on - strand at 227.212 kb on - strand at 227.908 kb on + strand, within Rru_A0188 at 227.908 kb on + strand, within Rru_A0188 at 227.908 kb on + strand, within Rru_A0188 at 227.908 kb on + strand, within Rru_A0188 at 227.909 kb on - strand, within Rru_A0188 at 227.909 kb on - strand, within Rru_A0188 at 227.909 kb on - strand, within Rru_A0188 at 227.909 kb on - strand, within Rru_A0188 at 227.909 kb on - strand, within Rru_A0188 at 227.909 kb on - strand, within Rru_A0188 at 227.909 kb on - strand, within Rru_A0188 at 227.953 kb on + strand, within Rru_A0188 at 227.954 kb on - strand, within Rru_A0188 at 227.954 kb on - strand, within Rru_A0188 at 227.954 kb on - strand, within Rru_A0188 at 227.987 kb on - strand, within Rru_A0188 at 228.209 kb on - strand, within Rru_A0188 at 228.209 kb on - strand, within Rru_A0188 at 228.476 kb on + strand, within Rru_A0188 at 228.476 kb on + strand, within Rru_A0188 at 228.551 kb on + strand, within Rru_A0188 at 228.551 kb on + strand, within Rru_A0188 at 228.551 kb on + strand, within Rru_A0188 at 228.551 kb on + strand, within Rru_A0188 at 228.552 kb on - strand, within Rru_A0188 at 228.552 kb on - strand, within Rru_A0188 at 228.552 kb on - strand, within Rru_A0188 at 228.552 kb on - strand, within Rru_A0188 at 228.697 kb on + strand at 228.697 kb on + strand at 228.697 kb on + strand at 228.697 kb on + strand at 228.904 kb on - strand at 229.231 kb on - strand, within Rru_A0189 at 229.325 kb on + strand, within Rru_A0189 at 229.325 kb on + strand, within Rru_A0189 at 229.407 kb on + strand, within Rru_A0189 at 229.774 kb on + strand, within Rru_A0189 at 229.774 kb on + strand, within Rru_A0189 at 229.774 kb on + strand, within Rru_A0189 at 229.774 kb on + strand, within Rru_A0189 at 229.774 kb on + strand, within Rru_A0189 at 229.774 kb on + strand, within Rru_A0189 at 229.774 kb on + strand, within Rru_A0189 at 229.775 kb on - strand, within Rru_A0189
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 226,105 + +1.0 226,106 - +0.0 226,143 - +1.1 226,165 - -0.5 226,176 - +0.0 226,256 + +1.0 226,399 - Rru_A0187 0.34 -1.0 226,413 - Rru_A0187 0.38 +0.0 226,413 - Rru_A0187 0.38 -0.4 226,413 - Rru_A0187 0.38 +1.0 226,534 + Rru_A0187 0.80 -0.0 226,589 + -1.3 226,594 - -1.0 226,676 + +0.7 226,676 + +1.2 226,677 - +1.3 226,677 - +0.0 226,681 + +0.3 226,681 + -0.9 226,681 + +0.0 227,019 + -0.4 227,019 + +0.6 227,030 - +0.0 227,032 - +1.4 227,064 + -0.1 227,065 - +0.0 227,126 - +1.0 227,212 - -0.8 227,908 + Rru_A0188 0.48 +0.3 227,908 + Rru_A0188 0.48 -0.5 227,908 + Rru_A0188 0.48 -0.9 227,908 + Rru_A0188 0.48 +0.0 227,909 - Rru_A0188 0.48 +1.5 227,909 - Rru_A0188 0.48 +0.2 227,909 - Rru_A0188 0.48 +0.4 227,909 - Rru_A0188 0.48 +0.0 227,909 - Rru_A0188 0.48 +0.0 227,909 - Rru_A0188 0.48 +0.2 227,909 - Rru_A0188 0.48 -0.4 227,953 + Rru_A0188 0.50 -1.0 227,954 - Rru_A0188 0.50 +0.2 227,954 - Rru_A0188 0.50 +0.2 227,954 - Rru_A0188 0.50 +0.0 227,987 - Rru_A0188 0.52 -0.6 228,209 - Rru_A0188 0.65 +0.0 228,209 - Rru_A0188 0.65 -0.5 228,476 + Rru_A0188 0.80 +0.1 228,476 + Rru_A0188 0.80 -0.4 228,551 + Rru_A0188 0.85 +0.7 228,551 + Rru_A0188 0.85 -1.0 228,551 + Rru_A0188 0.85 +0.2 228,551 + Rru_A0188 0.85 +0.0 228,552 - Rru_A0188 0.85 -0.8 228,552 - Rru_A0188 0.85 -0.4 228,552 - Rru_A0188 0.85 +0.0 228,552 - Rru_A0188 0.85 -0.5 228,697 + -0.6 228,697 + +0.7 228,697 + +0.0 228,697 + +0.0 228,904 - +0.0 229,231 - Rru_A0189 0.24 -0.7 229,325 + Rru_A0189 0.29 -0.1 229,325 + Rru_A0189 0.29 +0.0 229,407 + Rru_A0189 0.33 +0.1 229,774 + Rru_A0189 0.54 +0.0 229,774 + Rru_A0189 0.54 +1.1 229,774 + Rru_A0189 0.54 +0.0 229,774 + Rru_A0189 0.54 +0.5 229,774 + Rru_A0189 0.54 +0.3 229,774 + Rru_A0189 0.54 +0.2 229,774 + Rru_A0189 0.54 +0.3 229,775 - Rru_A0189 0.54 +0.0
Or see this region's nucleotide sequence