Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0185 and Rru_A0186 overlap by 4 nucleotides Rru_A0186 and Rru_A0187 are separated by 596 nucleotides
Rru_A0185: Rru_A0185 - hypothetical protein (NCBI), at 222,076 to 224,034
_A0185
Rru_A0186: Rru_A0186 - hypothetical protein (NCBI), at 224,031 to 225,704
_A0186
Rru_A0187: Rru_A0187 - hypothetical protein (NCBI), at 226,301 to 226,591
_A0187
Position (kb) 224
225
226 Strain fitness (log2 ratio) -1
0
1
2 at 223.276 kb on + strand, within Rru_A0185 at 223.276 kb on + strand, within Rru_A0185 at 223.277 kb on - strand, within Rru_A0185 at 223.357 kb on + strand, within Rru_A0185 at 224.071 kb on + strand at 224.072 kb on - strand at 224.211 kb on + strand, within Rru_A0186 at 224.212 kb on - strand, within Rru_A0186 at 224.253 kb on - strand, within Rru_A0186 at 224.253 kb on - strand, within Rru_A0186 at 224.330 kb on + strand, within Rru_A0186 at 224.330 kb on + strand, within Rru_A0186 at 224.330 kb on + strand, within Rru_A0186 at 224.331 kb on - strand, within Rru_A0186 at 224.331 kb on - strand, within Rru_A0186 at 224.331 kb on - strand, within Rru_A0186 at 224.331 kb on - strand, within Rru_A0186 at 224.331 kb on - strand, within Rru_A0186 at 224.465 kb on - strand, within Rru_A0186 at 224.478 kb on + strand, within Rru_A0186 at 224.478 kb on + strand, within Rru_A0186 at 224.479 kb on - strand, within Rru_A0186 at 224.479 kb on - strand, within Rru_A0186 at 224.571 kb on + strand, within Rru_A0186 at 224.571 kb on + strand, within Rru_A0186 at 224.857 kb on - strand, within Rru_A0186 at 224.946 kb on - strand, within Rru_A0186 at 224.980 kb on + strand, within Rru_A0186 at 225.032 kb on + strand, within Rru_A0186 at 225.122 kb on - strand, within Rru_A0186 at 225.122 kb on - strand, within Rru_A0186 at 225.122 kb on - strand, within Rru_A0186 at 225.122 kb on - strand, within Rru_A0186 at 225.122 kb on - strand, within Rru_A0186 at 225.281 kb on + strand, within Rru_A0186 at 225.568 kb on + strand at 225.568 kb on + strand at 225.568 kb on + strand at 225.569 kb on - strand at 225.665 kb on + strand at 225.667 kb on + strand at 225.667 kb on + strand at 225.667 kb on + strand at 225.668 kb on - strand at 225.668 kb on - strand at 225.668 kb on - strand at 225.668 kb on - strand at 225.668 kb on - strand at 225.668 kb on - strand at 225.668 kb on - strand at 225.709 kb on + strand at 225.710 kb on - strand at 225.740 kb on + strand at 225.741 kb on - strand at 225.741 kb on - strand at 225.883 kb on + strand at 225.884 kb on - strand at 225.887 kb on + strand at 225.888 kb on - strand at 225.889 kb on + strand at 225.895 kb on + strand at 225.900 kb on + strand at 225.968 kb on - strand at 226.105 kb on + strand at 226.106 kb on - strand at 226.143 kb on - strand at 226.165 kb on - strand at 226.176 kb on - strand at 226.256 kb on + strand at 226.399 kb on - strand, within Rru_A0187 at 226.413 kb on - strand, within Rru_A0187 at 226.413 kb on - strand, within Rru_A0187 at 226.413 kb on - strand, within Rru_A0187 at 226.534 kb on + strand, within Rru_A0187 at 226.589 kb on + strand at 226.594 kb on - strand at 226.676 kb on + strand at 226.676 kb on + strand at 226.677 kb on - strand at 226.677 kb on - strand at 226.681 kb on + strand at 226.681 kb on + strand at 226.681 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 223,276 + Rru_A0185 0.61 +0.0 223,276 + Rru_A0185 0.61 +0.0 223,277 - Rru_A0185 0.61 -0.4 223,357 + Rru_A0185 0.65 +0.2 224,071 + +0.1 224,072 - +0.8 224,211 + Rru_A0186 0.11 +0.3 224,212 - Rru_A0186 0.11 +0.0 224,253 - Rru_A0186 0.13 +0.8 224,253 - Rru_A0186 0.13 +0.4 224,330 + Rru_A0186 0.18 +0.0 224,330 + Rru_A0186 0.18 -0.8 224,330 + Rru_A0186 0.18 +0.0 224,331 - Rru_A0186 0.18 -0.2 224,331 - Rru_A0186 0.18 +0.0 224,331 - Rru_A0186 0.18 +0.9 224,331 - Rru_A0186 0.18 +0.5 224,331 - Rru_A0186 0.18 +0.0 224,465 - Rru_A0186 0.26 +0.0 224,478 + Rru_A0186 0.27 +0.2 224,478 + Rru_A0186 0.27 +0.0 224,479 - Rru_A0186 0.27 -1.6 224,479 - Rru_A0186 0.27 +0.2 224,571 + Rru_A0186 0.32 +0.7 224,571 + Rru_A0186 0.32 +0.0 224,857 - Rru_A0186 0.49 +0.0 224,946 - Rru_A0186 0.55 -0.5 224,980 + Rru_A0186 0.57 +0.2 225,032 + Rru_A0186 0.60 -0.7 225,122 - Rru_A0186 0.65 -1.0 225,122 - Rru_A0186 0.65 -0.7 225,122 - Rru_A0186 0.65 -1.6 225,122 - Rru_A0186 0.65 +0.3 225,122 - Rru_A0186 0.65 -0.6 225,281 + Rru_A0186 0.75 +0.0 225,568 + -1.3 225,568 + -0.1 225,568 + +0.4 225,569 - +0.1 225,665 + +0.4 225,667 + -0.4 225,667 + +0.0 225,667 + +0.3 225,668 - -1.0 225,668 - -0.8 225,668 - +0.0 225,668 - +2.1 225,668 - +0.0 225,668 - +0.0 225,668 - +0.0 225,709 + +0.6 225,710 - +0.0 225,740 + +0.2 225,741 - +0.8 225,741 - +0.0 225,883 + +0.2 225,884 - +0.0 225,887 + +0.3 225,888 - -0.5 225,889 + +1.0 225,895 + +0.0 225,900 + +0.0 225,968 - -0.1 226,105 + +1.0 226,106 - +0.0 226,143 - +1.1 226,165 - -0.5 226,176 - +0.0 226,256 + +1.0 226,399 - Rru_A0187 0.34 -1.0 226,413 - Rru_A0187 0.38 +0.0 226,413 - Rru_A0187 0.38 -0.4 226,413 - Rru_A0187 0.38 +1.0 226,534 + Rru_A0187 0.80 -0.0 226,589 + -1.3 226,594 - -1.0 226,676 + +0.7 226,676 + +1.2 226,677 - +1.3 226,677 - +0.0 226,681 + +0.3 226,681 + -0.9 226,681 + +0.0
Or see this region's nucleotide sequence