Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0180 and Rru_A0181 are separated by 28 nucleotides Rru_A0181 and Rru_A0182 overlap by 4 nucleotides Rru_A0182 and Rru_A0183 are separated by 155 nucleotides
Rru_A0180: Rru_A0180 - hypothetical protein (NCBI), at 214,303 to 215,160
_A0180
Rru_A0181: Rru_A0181 - hypothetical protein (NCBI), at 215,189 to 215,983
_A0181
Rru_A0182: Rru_A0182 - hypothetical protein (NCBI), at 215,980 to 217,629
_A0182
Rru_A0183: Rru_A0183 - Cold-shock DNA-binding domain protein (NCBI), at 217,785 to 220,433
_A0183
Position (kb) 215
216
217
218 Strain fitness (log2 ratio) -1
0
1
2 at 215.621 kb on - strand, within Rru_A0181 at 215.756 kb on + strand, within Rru_A0181 at 215.757 kb on - strand, within Rru_A0181 at 215.845 kb on - strand, within Rru_A0181 at 216.347 kb on - strand, within Rru_A0182 at 216.347 kb on - strand, within Rru_A0182 at 216.389 kb on + strand, within Rru_A0182 at 216.390 kb on - strand, within Rru_A0182 at 216.390 kb on - strand, within Rru_A0182 at 216.785 kb on + strand, within Rru_A0182 at 216.865 kb on + strand, within Rru_A0182 at 216.866 kb on - strand, within Rru_A0182 at 216.866 kb on - strand, within Rru_A0182 at 216.872 kb on - strand, within Rru_A0182 at 217.160 kb on - strand, within Rru_A0182 at 217.293 kb on + strand, within Rru_A0182 at 217.401 kb on - strand, within Rru_A0182 at 217.605 kb on + strand at 217.605 kb on + strand at 217.605 kb on + strand at 217.615 kb on + strand at 217.615 kb on + strand at 217.615 kb on + strand at 217.616 kb on - strand at 217.670 kb on - strand at 217.833 kb on + strand at 217.908 kb on - strand at 217.936 kb on + strand at 217.937 kb on - strand at 217.937 kb on - strand at 217.950 kb on + strand at 217.951 kb on - strand at 217.952 kb on + strand at 217.952 kb on + strand at 217.953 kb on - strand at 217.960 kb on + strand at 217.960 kb on + strand at 217.961 kb on - strand at 217.961 kb on - strand at 217.961 kb on - strand at 218.186 kb on + strand, within Rru_A0183 at 218.187 kb on - strand, within Rru_A0183 at 218.187 kb on - strand, within Rru_A0183 at 218.188 kb on + strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.209 kb on + strand, within Rru_A0183 at 218.209 kb on + strand, within Rru_A0183 at 218.210 kb on - strand, within Rru_A0183 at 218.210 kb on - strand, within Rru_A0183 at 218.210 kb on - strand, within Rru_A0183 at 218.210 kb on - strand, within Rru_A0183 at 218.267 kb on + strand, within Rru_A0183 at 218.267 kb on + strand, within Rru_A0183 at 218.267 kb on + strand, within Rru_A0183 at 218.268 kb on - strand, within Rru_A0183 at 218.270 kb on - strand, within Rru_A0183 at 218.352 kb on - strand, within Rru_A0183 at 218.352 kb on - strand, within Rru_A0183
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 215,621 - Rru_A0181 0.54 +0.0 215,756 + Rru_A0181 0.71 +0.3 215,757 - Rru_A0181 0.71 +0.0 215,845 - Rru_A0181 0.83 -1.5 216,347 - Rru_A0182 0.22 +1.2 216,347 - Rru_A0182 0.22 +0.0 216,389 + Rru_A0182 0.25 +0.6 216,390 - Rru_A0182 0.25 +1.1 216,390 - Rru_A0182 0.25 +0.0 216,785 + Rru_A0182 0.49 +0.3 216,865 + Rru_A0182 0.54 +1.3 216,866 - Rru_A0182 0.54 +1.1 216,866 - Rru_A0182 0.54 -0.0 216,872 - Rru_A0182 0.54 -0.3 217,160 - Rru_A0182 0.72 -0.2 217,293 + Rru_A0182 0.80 +0.0 217,401 - Rru_A0182 0.86 +0.0 217,605 + +0.0 217,605 + +0.0 217,605 + +0.5 217,615 + +0.0 217,615 + +0.7 217,615 + +0.5 217,616 - +0.0 217,670 - -0.1 217,833 + +0.0 217,908 - +0.5 217,936 + +0.1 217,937 - +0.0 217,937 - +0.7 217,950 + +0.0 217,951 - +1.0 217,952 + +2.0 217,952 + +0.0 217,953 - +0.7 217,960 + -0.6 217,960 + -0.1 217,961 - +0.0 217,961 - +0.0 217,961 - -1.0 218,186 + Rru_A0183 0.15 +0.1 218,187 - Rru_A0183 0.15 -0.3 218,187 - Rru_A0183 0.15 +0.0 218,188 + Rru_A0183 0.15 -0.7 218,189 - Rru_A0183 0.15 -0.5 218,189 - Rru_A0183 0.15 +0.7 218,189 - Rru_A0183 0.15 +0.3 218,189 - Rru_A0183 0.15 +0.7 218,189 - Rru_A0183 0.15 -0.3 218,189 - Rru_A0183 0.15 +0.0 218,189 - Rru_A0183 0.15 +0.0 218,189 - Rru_A0183 0.15 +0.2 218,209 + Rru_A0183 0.16 +0.0 218,209 + Rru_A0183 0.16 +0.1 218,210 - Rru_A0183 0.16 +0.0 218,210 - Rru_A0183 0.16 -0.3 218,210 - Rru_A0183 0.16 -0.0 218,210 - Rru_A0183 0.16 +0.0 218,267 + Rru_A0183 0.18 +1.4 218,267 + Rru_A0183 0.18 -0.8 218,267 + Rru_A0183 0.18 +0.0 218,268 - Rru_A0183 0.18 -0.0 218,270 - Rru_A0183 0.18 +0.9 218,352 - Rru_A0183 0.21 +0.0 218,352 - Rru_A0183 0.21 -0.1
Or see this region's nucleotide sequence