Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0180

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0179 and 11438598 are separated by 261 nucleotides11438598 and 11580961 overlap by 41 nucleotides11580961 and 11723353 overlap by 41 nucleotides11723353 and 11438599 are separated by 0 nucleotides11438599 and 11580962 overlap by 34 nucleotides11580962 and 11723354 overlap by 34 nucleotides11723354 and 11438600 are separated by 0 nucleotides11438600 and 11580963 overlap by 41 nucleotides11580963 and 11723355 overlap by 41 nucleotides11723355 and 11438601 are separated by 0 nucleotides11438601 and 11580964 overlap by 37 nucleotides11580964 and 11723356 overlap by 37 nucleotides11723356 and 11438602 are separated by 0 nucleotides11438602 and 11580965 overlap by 37 nucleotides11580965 and 11723357 overlap by 37 nucleotides11723357 and 11438603 are separated by 0 nucleotides11438603 and 11580966 overlap by 35 nucleotides11580966 and 11723358 overlap by 35 nucleotides11723358 and 11438604 are separated by 0 nucleotides11438604 and 11580967 overlap by 37 nucleotides11580967 and 11723359 overlap by 37 nucleotides11723359 and 11438605 are separated by 0 nucleotides11438605 and 11580968 overlap by 53 nucleotides11580968 and 11723360 overlap by 53 nucleotides11723360 and 11438606 are separated by 0 nucleotides11438606 and 11580969 overlap by 37 nucleotides11580969 and 11723361 overlap by 37 nucleotides11723361 and 11438607 are separated by 0 nucleotides11438607 and 11580970 overlap by 40 nucleotides11580970 and 11723362 overlap by 40 nucleotides11723362 and 11438608 are separated by 0 nucleotides11438608 and 11580971 overlap by 37 nucleotides11580971 and 11723363 overlap by 37 nucleotides11723363 and 11438609 are separated by 0 nucleotides11438609 and 11580972 overlap by 37 nucleotides11580972 and 11723364 overlap by 37 nucleotides11723364 and 11438610 are separated by 0 nucleotides11438610 and 11580973 overlap by 37 nucleotides11580973 and 11723365 overlap by 37 nucleotides11723365 and 11438611 are separated by 0 nucleotides11438611 and 11580974 overlap by 37 nucleotides11580974 and 11723366 overlap by 37 nucleotides11723366 and 11438612 are separated by 0 nucleotides11438612 and 11580975 overlap by 37 nucleotides11580975 and 11723367 overlap by 37 nucleotides11723367 and Rru_A0180 are separated by 129 nucleotidesRru_A0180 and Rru_A0181 are separated by 28 nucleotidesRru_A0181 and Rru_A0182 overlap by 4 nucleotides Rru_A0179: Rru_A0179 - Protein of unknown function DUF83 (NCBI), at 211,593 to 213,335 _A0179 11438598 - no description, at 213,597 to 213,637 11438598 11580961 - no description, at 213,597 to 213,637 11580961 11723353 - no description, at 213,597 to 213,637 11723353 11438599 - no description, at 213,638 to 213,671 11438599 11580962 - no description, at 213,638 to 213,671 11580962 11723354 - no description, at 213,638 to 213,671 11723354 11438600 - no description, at 213,672 to 213,712 11438600 11580963 - no description, at 213,672 to 213,712 11580963 11723355 - no description, at 213,672 to 213,712 11723355 11438601 - no description, at 213,713 to 213,749 11438601 11580964 - no description, at 213,713 to 213,749 11580964 11723356 - no description, at 213,713 to 213,749 11723356 11438602 - no description, at 213,750 to 213,786 11438602 11580965 - no description, at 213,750 to 213,786 11580965 11723357 - no description, at 213,750 to 213,786 11723357 11438603 - no description, at 213,787 to 213,821 11438603 11580966 - no description, at 213,787 to 213,821 11580966 11723358 - no description, at 213,787 to 213,821 11723358 11438604 - no description, at 213,822 to 213,858 11438604 11580967 - no description, at 213,822 to 213,858 11580967 11723359 - no description, at 213,822 to 213,858 11723359 11438605 - no description, at 213,859 to 213,911 11438605 11580968 - no description, at 213,859 to 213,911 11580968 11723360 - no description, at 213,859 to 213,911 11723360 11438606 - no description, at 213,912 to 213,948 11438606 11580969 - no description, at 213,912 to 213,948 11580969 11723361 - no description, at 213,912 to 213,948 11723361 11438607 - no description, at 213,949 to 213,988 11438607 11580970 - no description, at 213,949 to 213,988 11580970 11723362 - no description, at 213,949 to 213,988 11723362 11438608 - no description, at 213,989 to 214,025 11438608 11580971 - no description, at 213,989 to 214,025 11580971 11723363 - no description, at 213,989 to 214,025 11723363 11438609 - no description, at 214,026 to 214,062 11438609 11580972 - no description, at 214,026 to 214,062 11580972 11723364 - no description, at 214,026 to 214,062 11723364 11438610 - no description, at 214,063 to 214,099 11438610 11580973 - no description, at 214,063 to 214,099 11580973 11723365 - no description, at 214,063 to 214,099 11723365 11438611 - no description, at 214,100 to 214,136 11438611 11580974 - no description, at 214,100 to 214,136 11580974 11723366 - no description, at 214,100 to 214,136 11723366 11438612 - no description, at 214,137 to 214,173 11438612 11580975 - no description, at 214,137 to 214,173 11580975 11723367 - no description, at 214,137 to 214,173 11723367 Rru_A0180: Rru_A0180 - hypothetical protein (NCBI), at 214,303 to 215,160 _A0180 Rru_A0181: Rru_A0181 - hypothetical protein (NCBI), at 215,189 to 215,983 _A0181 Rru_A0182: Rru_A0182 - hypothetical protein (NCBI), at 215,980 to 217,629 _A0182 Position (kb) 214 215 216Strain fitness (log2 ratio) -2 -1 0 1 2at 213.537 kb on + strandat 213.559 kb on - strandat 213.620 kb on - strandat 213.748 kb on + strandat 213.749 kb on - strandat 213.749 kb on - strandat 213.772 kb on - strandat 213.843 kb on + strandat 213.844 kb on - strandat 213.934 kb on - strandat 214.010 kb on + strandat 214.057 kb on + strandat 214.057 kb on + strandat 214.057 kb on + strandat 214.057 kb on + strandat 214.058 kb on - strandat 214.058 kb on - strandat 214.058 kb on - strandat 214.085 kb on - strandat 214.085 kb on - strandat 214.085 kb on - strandat 214.085 kb on - strandat 214.133 kb on - strandat 214.187 kb on - strandat 214.187 kb on - strandat 214.661 kb on + strand, within Rru_A0180at 214.661 kb on + strand, within Rru_A0180at 215.621 kb on - strand, within Rru_A0181at 215.756 kb on + strand, within Rru_A0181at 215.757 kb on - strand, within Rru_A0181at 215.845 kb on - strand, within Rru_A0181

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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213,537 + -1.8
213,559 - +0.0
213,620 - +0.4
213,748 + +0.5
213,749 - +0.0
213,749 - +0.2
213,772 - +0.0
213,843 + +0.0
213,844 - +0.0
213,934 - +0.0
214,010 + +0.0
214,057 + +0.6
214,057 + +0.0
214,057 + +0.6
214,057 + +0.2
214,058 - +0.0
214,058 - +0.0
214,058 - +0.0
214,085 - +1.8
214,085 - -0.7
214,085 - +0.0
214,085 - +0.1
214,133 - +0.0
214,187 - +0.7
214,187 - +0.7
214,661 + Rru_A0180 0.42 +0.0
214,661 + Rru_A0180 0.42 +1.3
215,621 - Rru_A0181 0.54 +0.0
215,756 + Rru_A0181 0.71 +0.3
215,757 - Rru_A0181 0.71 +0.0
215,845 - Rru_A0181 0.83 -1.5

Or see this region's nucleotide sequence