Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0174

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0172 and Rru_A0173 are separated by 2 nucleotidesRru_A0173 and Rru_A0174 overlap by 4 nucleotidesRru_A0174 and Rru_A0175 are separated by 288 nucleotides Rru_A0172: Rru_A0172 - CRISPR-associated protein, CT1975 (NCBI), at 202,682 to 203,761 _A0172 Rru_A0173: Rru_A0173 - hypothetical protein (NCBI), at 203,764 to 204,366 _A0173 Rru_A0174: Rru_A0174 - hypothetical protein (NCBI), at 204,363 to 206,030 _A0174 Rru_A0175: Rru_A0175 - CRISPR-associated helicase Cas3, core (NCBI), at 206,319 to 209,081 _A0175 Position (kb) 204 205 206 207Strain fitness (log2 ratio) -1 0 1 2at 203.777 kb on - strandat 203.855 kb on + strand, within Rru_A0173at 203.855 kb on + strand, within Rru_A0173at 203.971 kb on + strand, within Rru_A0173at 203.971 kb on + strand, within Rru_A0173at 203.971 kb on + strand, within Rru_A0173at 203.972 kb on - strand, within Rru_A0173at 204.525 kb on - strandat 204.568 kb on - strand, within Rru_A0174at 204.568 kb on - strand, within Rru_A0174at 204.774 kb on + strand, within Rru_A0174at 204.850 kb on + strand, within Rru_A0174at 204.850 kb on + strand, within Rru_A0174at 205.010 kb on - strand, within Rru_A0174at 205.010 kb on - strand, within Rru_A0174at 205.036 kb on + strand, within Rru_A0174at 205.036 kb on + strand, within Rru_A0174at 205.036 kb on + strand, within Rru_A0174at 205.037 kb on - strand, within Rru_A0174at 205.037 kb on - strand, within Rru_A0174at 205.037 kb on - strand, within Rru_A0174at 205.126 kb on + strand, within Rru_A0174at 205.138 kb on + strand, within Rru_A0174at 205.138 kb on + strand, within Rru_A0174at 205.138 kb on + strand, within Rru_A0174at 205.139 kb on - strand, within Rru_A0174at 205.139 kb on - strand, within Rru_A0174at 205.139 kb on - strand, within Rru_A0174at 205.139 kb on - strand, within Rru_A0174at 205.543 kb on + strand, within Rru_A0174at 205.543 kb on + strand, within Rru_A0174at 205.544 kb on - strand, within Rru_A0174at 205.544 kb on - strand, within Rru_A0174at 205.576 kb on + strand, within Rru_A0174at 205.665 kb on + strand, within Rru_A0174at 205.665 kb on + strand, within Rru_A0174at 205.666 kb on - strand, within Rru_A0174at 205.666 kb on - strand, within Rru_A0174at 205.666 kb on - strand, within Rru_A0174at 205.666 kb on - strand, within Rru_A0174at 205.709 kb on + strand, within Rru_A0174at 205.709 kb on + strand, within Rru_A0174at 205.710 kb on - strand, within Rru_A0174at 205.852 kb on + strand, within Rru_A0174at 205.853 kb on - strand, within Rru_A0174at 205.866 kb on + strandat 205.947 kb on - strandat 206.021 kb on + strandat 206.021 kb on + strandat 206.022 kb on - strandat 206.022 kb on - strandat 206.022 kb on - strandat 206.022 kb on - strandat 206.057 kb on - strandat 206.057 kb on - strandat 206.177 kb on + strandat 206.178 kb on - strandat 206.180 kb on + strandat 206.180 kb on + strandat 206.180 kb on + strandat 206.181 kb on - strandat 206.196 kb on - strandat 206.196 kb on - strandat 206.237 kb on + strandat 206.238 kb on - strandat 206.240 kb on + strandat 206.241 kb on - strandat 206.246 kb on + strandat 206.294 kb on + strandat 206.309 kb on + strandat 206.310 kb on - strandat 206.310 kb on - strandat 206.362 kb on + strandat 206.363 kb on - strandat 206.363 kb on - strandat 206.547 kb on + strandat 206.711 kb on - strand, within Rru_A0175at 206.740 kb on + strand, within Rru_A0175at 206.740 kb on + strand, within Rru_A0175at 206.741 kb on - strand, within Rru_A0175at 206.741 kb on - strand, within Rru_A0175at 206.844 kb on + strand, within Rru_A0175at 206.845 kb on - strand, within Rru_A0175at 206.845 kb on - strand, within Rru_A0175at 206.966 kb on - strand, within Rru_A0175at 206.966 kb on - strand, within Rru_A0175

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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203,777 - +0.5
203,855 + Rru_A0173 0.15 +0.7
203,855 + Rru_A0173 0.15 -0.0
203,971 + Rru_A0173 0.34 +0.4
203,971 + Rru_A0173 0.34 +1.1
203,971 + Rru_A0173 0.34 +0.0
203,972 - Rru_A0173 0.34 +1.5
204,525 - +0.0
204,568 - Rru_A0174 0.12 +0.0
204,568 - Rru_A0174 0.12 +0.0
204,774 + Rru_A0174 0.25 +0.2
204,850 + Rru_A0174 0.29 -0.8
204,850 + Rru_A0174 0.29 +0.6
205,010 - Rru_A0174 0.39 +0.2
205,010 - Rru_A0174 0.39 -0.1
205,036 + Rru_A0174 0.40 +0.0
205,036 + Rru_A0174 0.40 +0.5
205,036 + Rru_A0174 0.40 +0.0
205,037 - Rru_A0174 0.40 +0.2
205,037 - Rru_A0174 0.40 +0.4
205,037 - Rru_A0174 0.40 +0.0
205,126 + Rru_A0174 0.46 +0.1
205,138 + Rru_A0174 0.46 -0.3
205,138 + Rru_A0174 0.46 +0.1
205,138 + Rru_A0174 0.46 -1.0
205,139 - Rru_A0174 0.47 +0.0
205,139 - Rru_A0174 0.47 +0.0
205,139 - Rru_A0174 0.47 +0.0
205,139 - Rru_A0174 0.47 -0.2
205,543 + Rru_A0174 0.71 +0.0
205,543 + Rru_A0174 0.71 +0.9
205,544 - Rru_A0174 0.71 +0.0
205,544 - Rru_A0174 0.71 -0.2
205,576 + Rru_A0174 0.73 +0.0
205,665 + Rru_A0174 0.78 +0.0
205,665 + Rru_A0174 0.78 +0.0
205,666 - Rru_A0174 0.78 +0.0
205,666 - Rru_A0174 0.78 -1.0
205,666 - Rru_A0174 0.78 +0.8
205,666 - Rru_A0174 0.78 +0.3
205,709 + Rru_A0174 0.81 -1.0
205,709 + Rru_A0174 0.81 +0.6
205,710 - Rru_A0174 0.81 -0.2
205,852 + Rru_A0174 0.89 +0.3
205,853 - Rru_A0174 0.89 +0.0
205,866 + +0.0
205,947 - +1.7
206,021 + +1.1
206,021 + +0.0
206,022 - -0.4
206,022 - +0.0
206,022 - +0.0
206,022 - +0.0
206,057 - +1.1
206,057 - +0.0
206,177 + +0.0
206,178 - +0.0
206,180 + +0.3
206,180 + +0.0
206,180 + -1.0
206,181 - -1.0
206,196 - +0.6
206,196 - -0.2
206,237 + +0.0
206,238 - +0.9
206,240 + +0.3
206,241 - +0.0
206,246 + +0.6
206,294 + +0.3
206,309 + +0.0
206,310 - +0.9
206,310 - +0.0
206,362 + -1.0
206,363 - +0.0
206,363 - +0.7
206,547 + +0.0
206,711 - Rru_A0175 0.14 +0.1
206,740 + Rru_A0175 0.15 +2.1
206,740 + Rru_A0175 0.15 +0.5
206,741 - Rru_A0175 0.15 +0.0
206,741 - Rru_A0175 0.15 -1.0
206,844 + Rru_A0175 0.19 +0.0
206,845 - Rru_A0175 0.19 +0.4
206,845 - Rru_A0175 0.19 +0.9
206,966 - Rru_A0175 0.23 +0.7
206,966 - Rru_A0175 0.23 +0.0

Or see this region's nucleotide sequence