Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0173

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0172 and Rru_A0173 are separated by 2 nucleotidesRru_A0173 and Rru_A0174 overlap by 4 nucleotides Rru_A0172: Rru_A0172 - CRISPR-associated protein, CT1975 (NCBI), at 202,682 to 203,761 _A0172 Rru_A0173: Rru_A0173 - hypothetical protein (NCBI), at 203,764 to 204,366 _A0173 Rru_A0174: Rru_A0174 - hypothetical protein (NCBI), at 204,363 to 206,030 _A0174 Position (kb) 203 204 205Strain fitness (log2 ratio) -1 0 1at 202.794 kb on + strand, within Rru_A0172at 202.794 kb on + strand, within Rru_A0172at 202.794 kb on + strand, within Rru_A0172at 202.795 kb on - strand, within Rru_A0172at 202.795 kb on - strand, within Rru_A0172at 203.091 kb on + strand, within Rru_A0172at 203.091 kb on + strand, within Rru_A0172at 203.091 kb on + strand, within Rru_A0172at 203.092 kb on - strand, within Rru_A0172at 203.092 kb on - strand, within Rru_A0172at 203.098 kb on - strand, within Rru_A0172at 203.098 kb on - strand, within Rru_A0172at 203.190 kb on + strand, within Rru_A0172at 203.190 kb on + strand, within Rru_A0172at 203.190 kb on + strand, within Rru_A0172at 203.190 kb on + strand, within Rru_A0172at 203.191 kb on - strand, within Rru_A0172at 203.191 kb on - strand, within Rru_A0172at 203.191 kb on - strand, within Rru_A0172at 203.191 kb on - strand, within Rru_A0172at 203.193 kb on + strand, within Rru_A0172at 203.193 kb on + strand, within Rru_A0172at 203.193 kb on + strand, within Rru_A0172at 203.194 kb on - strand, within Rru_A0172at 203.777 kb on - strandat 203.855 kb on + strand, within Rru_A0173at 203.855 kb on + strand, within Rru_A0173at 203.971 kb on + strand, within Rru_A0173at 203.971 kb on + strand, within Rru_A0173at 203.971 kb on + strand, within Rru_A0173at 203.972 kb on - strand, within Rru_A0173at 204.525 kb on - strandat 204.568 kb on - strand, within Rru_A0174at 204.568 kb on - strand, within Rru_A0174at 204.774 kb on + strand, within Rru_A0174at 204.850 kb on + strand, within Rru_A0174at 204.850 kb on + strand, within Rru_A0174at 205.010 kb on - strand, within Rru_A0174at 205.010 kb on - strand, within Rru_A0174at 205.036 kb on + strand, within Rru_A0174at 205.036 kb on + strand, within Rru_A0174at 205.036 kb on + strand, within Rru_A0174at 205.037 kb on - strand, within Rru_A0174at 205.037 kb on - strand, within Rru_A0174at 205.037 kb on - strand, within Rru_A0174at 205.126 kb on + strand, within Rru_A0174at 205.138 kb on + strand, within Rru_A0174at 205.138 kb on + strand, within Rru_A0174at 205.138 kb on + strand, within Rru_A0174at 205.139 kb on - strand, within Rru_A0174at 205.139 kb on - strand, within Rru_A0174at 205.139 kb on - strand, within Rru_A0174at 205.139 kb on - strand, within Rru_A0174

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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202,794 + Rru_A0172 0.10 +1.2
202,794 + Rru_A0172 0.10 +0.6
202,794 + Rru_A0172 0.10 +0.0
202,795 - Rru_A0172 0.10 +0.5
202,795 - Rru_A0172 0.10 +0.0
203,091 + Rru_A0172 0.38 +0.9
203,091 + Rru_A0172 0.38 +0.2
203,091 + Rru_A0172 0.38 +0.0
203,092 - Rru_A0172 0.38 +0.0
203,092 - Rru_A0172 0.38 -1.6
203,098 - Rru_A0172 0.39 +0.3
203,098 - Rru_A0172 0.39 -0.6
203,190 + Rru_A0172 0.47 -0.2
203,190 + Rru_A0172 0.47 +0.8
203,190 + Rru_A0172 0.47 -1.0
203,190 + Rru_A0172 0.47 +1.4
203,191 - Rru_A0172 0.47 -0.2
203,191 - Rru_A0172 0.47 +0.0
203,191 - Rru_A0172 0.47 +0.4
203,191 - Rru_A0172 0.47 +0.0
203,193 + Rru_A0172 0.47 -1.6
203,193 + Rru_A0172 0.47 -0.4
203,193 + Rru_A0172 0.47 +0.5
203,194 - Rru_A0172 0.47 -0.7
203,777 - +0.5
203,855 + Rru_A0173 0.15 +0.7
203,855 + Rru_A0173 0.15 -0.0
203,971 + Rru_A0173 0.34 +0.4
203,971 + Rru_A0173 0.34 +1.1
203,971 + Rru_A0173 0.34 +0.0
203,972 - Rru_A0173 0.34 +1.5
204,525 - +0.0
204,568 - Rru_A0174 0.12 +0.0
204,568 - Rru_A0174 0.12 +0.0
204,774 + Rru_A0174 0.25 +0.2
204,850 + Rru_A0174 0.29 -0.8
204,850 + Rru_A0174 0.29 +0.6
205,010 - Rru_A0174 0.39 +0.2
205,010 - Rru_A0174 0.39 -0.1
205,036 + Rru_A0174 0.40 +0.0
205,036 + Rru_A0174 0.40 +0.5
205,036 + Rru_A0174 0.40 +0.0
205,037 - Rru_A0174 0.40 +0.2
205,037 - Rru_A0174 0.40 +0.4
205,037 - Rru_A0174 0.40 +0.0
205,126 + Rru_A0174 0.46 +0.1
205,138 + Rru_A0174 0.46 -0.3
205,138 + Rru_A0174 0.46 +0.1
205,138 + Rru_A0174 0.46 -1.0
205,139 - Rru_A0174 0.47 +0.0
205,139 - Rru_A0174 0.47 +0.0
205,139 - Rru_A0174 0.47 +0.0
205,139 - Rru_A0174 0.47 -0.2

Or see this region's nucleotide sequence