Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_AR0007 and Rru_AR0008 are separated by 119 nucleotides Rru_AR0008 and Rru_AR0009 are separated by 96 nucleotides Rru_AR0009 and Rru_A0165 are separated by 287 nucleotides Rru_A0165 and 11438559 are separated by 222 nucleotides 11438559 and 11580922 overlap by 29 nucleotides 11580922 and 11723314 overlap by 29 nucleotides 11723314 and 11438560 are separated by 0 nucleotides 11438560 and 11580923 overlap by 32 nucleotides 11580923 and 11723315 overlap by 32 nucleotides 11723315 and 11438561 are separated by 0 nucleotides
Rru_AR0007: Rru_AR0007 - 23S ribosomal RNA (NCBI), at 194,770 to 197,527
_AR0007
Rru_AR0008: Rru_AR0008 - 5S ribosomal RNA (NCBI), at 197,647 to 197,761
_AR0008
Rru_AR0009: Rru_AR0009 - tRNA-Met (NCBI), at 197,858 to 197,934
_AR0009
Rru_A0165: Rru_A0165 - hypothetical protein (NCBI), at 198,222 to 198,455
_A0165
11438559 - no description, at 198,678 to 198,706
11438559
11580922 - no description, at 198,678 to 198,706
11580922
11723314 - no description, at 198,678 to 198,706
11723314
11438560 - no description, at 198,707 to 198,738
11438560
11580923 - no description, at 198,707 to 198,738
11580923
11723315 - no description, at 198,707 to 198,738
11723315
11438561 - no description, at 198,739 to 198,767
11438561
11580924 - no description, at 198,739 to 198,767
11580924
11723316 - no description, at 198,739 to 198,767
11723316
Position (kb) 197
198 Strain fitness (log2 ratio) -1
0
1
2 at 197.605 kb on - strand at 197.746 kb on + strand, within Rru_AR0008 at 197.746 kb on + strand, within Rru_AR0008 at 197.746 kb on + strand, within Rru_AR0008 at 197.746 kb on + strand, within Rru_AR0008 at 197.746 kb on + strand, within Rru_AR0008 at 198.071 kb on + strand at 198.187 kb on + strand at 198.187 kb on + strand at 198.188 kb on - strand at 198.188 kb on - strand at 198.188 kb on - strand at 198.188 kb on - strand at 198.495 kb on + strand at 198.495 kb on + strand at 198.496 kb on - strand at 198.548 kb on + strand at 198.549 kb on - strand at 198.549 kb on - strand at 198.552 kb on - strand at 198.568 kb on + strand at 198.569 kb on - strand at 198.571 kb on + strand at 198.572 kb on - strand at 198.572 kb on - strand at 198.587 kb on + strand at 198.588 kb on - strand at 198.588 kb on - strand at 198.607 kb on + strand at 198.608 kb on - strand at 198.610 kb on + strand at 198.611 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 197,605 - -1.0 197,746 + Rru_AR0008 0.86 +0.3 197,746 + Rru_AR0008 0.86 +1.4 197,746 + Rru_AR0008 0.86 +0.0 197,746 + Rru_AR0008 0.86 +0.9 197,746 + Rru_AR0008 0.86 +2.4 198,071 + +0.8 198,187 + +2.3 198,187 + +0.8 198,188 - +0.0 198,188 - -1.0 198,188 - +0.5 198,188 - +0.0 198,495 + +0.0 198,495 + +0.4 198,496 - +0.0 198,548 + +0.0 198,549 - +0.0 198,549 - +0.2 198,552 - +0.4 198,568 + +0.0 198,569 - +0.0 198,571 + +0.5 198,572 - -1.0 198,572 - +0.7 198,587 + +0.6 198,588 - +1.0 198,588 - +0.7 198,607 + +1.0 198,608 - +0.0 198,610 + -1.0 198,611 - -1.6
Or see this region's nucleotide sequence