Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0157

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0156 and Rru_A0157 are separated by 18 nucleotidesRru_A0157 and Rru_A0158 are separated by 112 nucleotides Rru_A0156: Rru_A0156 - Secretion protein HlyD (NCBI), at 180,433 to 181,605 _A0156 Rru_A0157: Rru_A0157 - Drug resistance transporter EmrB/QacA subfamily (NCBI), at 181,624 to 183,198 _A0157 Rru_A0158: Rru_A0158 - chemotaxis sensory transducer (NCBI), at 183,311 to 184,996 _A0158 Position (kb) 181 182 183 184Strain fitness (log2 ratio) -1 0 1at 180.624 kb on + strand, within Rru_A0156at 180.667 kb on + strand, within Rru_A0156at 180.731 kb on + strand, within Rru_A0156at 180.731 kb on + strand, within Rru_A0156at 180.731 kb on + strand, within Rru_A0156at 180.731 kb on + strand, within Rru_A0156at 180.731 kb on + strand, within Rru_A0156at 180.732 kb on - strand, within Rru_A0156at 180.732 kb on - strand, within Rru_A0156at 180.732 kb on - strand, within Rru_A0156at 180.732 kb on - strand, within Rru_A0156at 180.732 kb on - strand, within Rru_A0156at 180.736 kb on - strand, within Rru_A0156at 181.192 kb on + strand, within Rru_A0156at 181.192 kb on + strand, within Rru_A0156at 181.192 kb on + strand, within Rru_A0156at 181.192 kb on + strand, within Rru_A0156at 181.192 kb on + strand, within Rru_A0156at 181.192 kb on + strand, within Rru_A0156at 181.192 kb on + strand, within Rru_A0156at 181.192 kb on + strand, within Rru_A0156at 181.193 kb on - strand, within Rru_A0156at 181.193 kb on - strand, within Rru_A0156at 181.193 kb on - strand, within Rru_A0156at 181.193 kb on - strand, within Rru_A0156at 181.193 kb on - strand, within Rru_A0156at 181.193 kb on - strand, within Rru_A0156at 181.321 kb on + strand, within Rru_A0156at 181.322 kb on - strand, within Rru_A0156at 181.604 kb on - strandat 181.806 kb on - strand, within Rru_A0157at 181.820 kb on + strand, within Rru_A0157at 181.821 kb on - strand, within Rru_A0157at 181.821 kb on - strand, within Rru_A0157at 182.154 kb on - strand, within Rru_A0157at 182.299 kb on + strand, within Rru_A0157at 182.299 kb on + strand, within Rru_A0157at 182.299 kb on + strand, within Rru_A0157at 182.300 kb on - strand, within Rru_A0157at 182.300 kb on - strand, within Rru_A0157at 182.300 kb on - strand, within Rru_A0157at 182.301 kb on + strand, within Rru_A0157at 182.301 kb on + strand, within Rru_A0157at 182.301 kb on + strand, within Rru_A0157at 182.302 kb on - strand, within Rru_A0157at 182.302 kb on - strand, within Rru_A0157at 182.302 kb on - strand, within Rru_A0157at 182.473 kb on + strand, within Rru_A0157at 182.474 kb on - strand, within Rru_A0157at 182.474 kb on - strand, within Rru_A0157at 182.513 kb on - strand, within Rru_A0157at 182.513 kb on - strand, within Rru_A0157at 182.725 kb on + strand, within Rru_A0157at 182.725 kb on + strand, within Rru_A0157at 182.726 kb on - strand, within Rru_A0157at 182.726 kb on - strand, within Rru_A0157at 182.848 kb on + strand, within Rru_A0157at 182.848 kb on + strand, within Rru_A0157at 182.849 kb on - strand, within Rru_A0157at 182.850 kb on + strand, within Rru_A0157at 182.850 kb on + strand, within Rru_A0157at 182.851 kb on - strand, within Rru_A0157at 182.929 kb on + strand, within Rru_A0157at 182.930 kb on - strand, within Rru_A0157at 182.930 kb on - strand, within Rru_A0157at 182.935 kb on + strand, within Rru_A0157at 182.935 kb on + strand, within Rru_A0157at 182.936 kb on - strand, within Rru_A0157at 182.936 kb on - strand, within Rru_A0157at 182.936 kb on - strand, within Rru_A0157at 183.493 kb on + strand, within Rru_A0158at 183.865 kb on + strand, within Rru_A0158

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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180,624 + Rru_A0156 0.16 +0.0
180,667 + Rru_A0156 0.20 +0.0
180,731 + Rru_A0156 0.25 +0.7
180,731 + Rru_A0156 0.25 -0.2
180,731 + Rru_A0156 0.25 +0.0
180,731 + Rru_A0156 0.25 +0.0
180,731 + Rru_A0156 0.25 +0.3
180,732 - Rru_A0156 0.25 +0.0
180,732 - Rru_A0156 0.25 +0.4
180,732 - Rru_A0156 0.25 +0.0
180,732 - Rru_A0156 0.25 +0.6
180,732 - Rru_A0156 0.25 +0.0
180,736 - Rru_A0156 0.26 -0.1
181,192 + Rru_A0156 0.65 +0.4
181,192 + Rru_A0156 0.65 +0.0
181,192 + Rru_A0156 0.65 +0.5
181,192 + Rru_A0156 0.65 -0.4
181,192 + Rru_A0156 0.65 +0.0
181,192 + Rru_A0156 0.65 -0.8
181,192 + Rru_A0156 0.65 +1.0
181,192 + Rru_A0156 0.65 +0.6
181,193 - Rru_A0156 0.65 +0.0
181,193 - Rru_A0156 0.65 +1.1
181,193 - Rru_A0156 0.65 +0.0
181,193 - Rru_A0156 0.65 +0.6
181,193 - Rru_A0156 0.65 +0.4
181,193 - Rru_A0156 0.65 +1.2
181,321 + Rru_A0156 0.76 +0.0
181,322 - Rru_A0156 0.76 +0.0
181,604 - +0.0
181,806 - Rru_A0157 0.12 +0.5
181,820 + Rru_A0157 0.12 +0.0
181,821 - Rru_A0157 0.13 +0.0
181,821 - Rru_A0157 0.13 +0.0
182,154 - Rru_A0157 0.34 -0.5
182,299 + Rru_A0157 0.43 -0.4
182,299 + Rru_A0157 0.43 -1.0
182,299 + Rru_A0157 0.43 -0.7
182,300 - Rru_A0157 0.43 +0.2
182,300 - Rru_A0157 0.43 +0.5
182,300 - Rru_A0157 0.43 -1.3
182,301 + Rru_A0157 0.43 +0.0
182,301 + Rru_A0157 0.43 +0.1
182,301 + Rru_A0157 0.43 +0.2
182,302 - Rru_A0157 0.43 +0.6
182,302 - Rru_A0157 0.43 +0.0
182,302 - Rru_A0157 0.43 +0.0
182,473 + Rru_A0157 0.54 +0.1
182,474 - Rru_A0157 0.54 +0.2
182,474 - Rru_A0157 0.54 +0.0
182,513 - Rru_A0157 0.56 +0.0
182,513 - Rru_A0157 0.56 +0.0
182,725 + Rru_A0157 0.70 +0.6
182,725 + Rru_A0157 0.70 +0.8
182,726 - Rru_A0157 0.70 +0.0
182,726 - Rru_A0157 0.70 +0.0
182,848 + Rru_A0157 0.78 +0.2
182,848 + Rru_A0157 0.78 -1.0
182,849 - Rru_A0157 0.78 +0.0
182,850 + Rru_A0157 0.78 +0.4
182,850 + Rru_A0157 0.78 +0.8
182,851 - Rru_A0157 0.78 +1.0
182,929 + Rru_A0157 0.83 -0.5
182,930 - Rru_A0157 0.83 +0.0
182,930 - Rru_A0157 0.83 +0.0
182,935 + Rru_A0157 0.83 +0.0
182,935 + Rru_A0157 0.83 +0.6
182,936 - Rru_A0157 0.83 +0.0
182,936 - Rru_A0157 0.83 -0.1
182,936 - Rru_A0157 0.83 +0.0
183,493 + Rru_A0158 0.11 +0.5
183,865 + Rru_A0158 0.33 -0.5

Or see this region's nucleotide sequence