Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0150 and Rru_A0151 are separated by 61 nucleotides Rru_A0151 and Rru_A0152 overlap by 4 nucleotides Rru_A0152 and Rru_A0153 are separated by 973 nucleotides
Rru_A0150: Rru_A0150 - hypothetical protein (NCBI), at 174,994 to 175,677
_A0150
Rru_A0151: Rru_A0151 - hypothetical protein (NCBI), at 175,739 to 176,482
_A0151
Rru_A0152: Rru_A0152 - hypothetical protein (NCBI), at 176,479 to 176,895
_A0152
Rru_A0153: Rru_A0153 - Endonuclease III/Nth (NCBI), at 177,869 to 178,582
_A0153
Position (kb) 176
177 Strain fitness (log2 ratio) -1
0
1
2 at 175.676 kb on - strand at 175.690 kb on + strand at 175.690 kb on + strand at 175.691 kb on - strand at 176.026 kb on + strand, within Rru_A0151 at 176.027 kb on - strand, within Rru_A0151 at 176.027 kb on - strand, within Rru_A0151 at 176.764 kb on + strand, within Rru_A0152 at 176.764 kb on + strand, within Rru_A0152 at 176.764 kb on + strand, within Rru_A0152 at 176.894 kb on - strand at 177.003 kb on + strand at 177.089 kb on + strand at 177.104 kb on - strand at 177.108 kb on - strand at 177.154 kb on + strand at 177.264 kb on - strand at 177.265 kb on + strand at 177.367 kb on - strand at 177.404 kb on - strand at 177.448 kb on - strand at 177.448 kb on - strand at 177.478 kb on - strand at 177.737 kb on + strand at 177.737 kb on + strand at 177.755 kb on + strand at 177.757 kb on + strand at 177.843 kb on + strand at 177.850 kb on + strand at 177.850 kb on + strand at 177.851 kb on - strand at 177.872 kb on + strand at 177.873 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 175,676 - -0.6 175,690 + +0.6 175,690 + +0.0 175,691 - +0.9 176,026 + Rru_A0151 0.39 +0.0 176,027 - Rru_A0151 0.39 -0.6 176,027 - Rru_A0151 0.39 +1.0 176,764 + Rru_A0152 0.68 -0.5 176,764 + Rru_A0152 0.68 -0.1 176,764 + Rru_A0152 0.68 -0.1 176,894 - +0.3 177,003 + +0.0 177,089 + +0.0 177,104 - +0.0 177,108 - +0.0 177,154 + +0.0 177,264 - +0.0 177,265 + +0.4 177,367 - +0.4 177,404 - +0.0 177,448 - -1.0 177,448 - +0.0 177,478 - +0.0 177,737 + +0.0 177,737 + +1.9 177,755 + -0.2 177,757 + +0.3 177,843 + -1.0 177,850 + +0.0 177,850 + +0.6 177,851 - +0.1 177,872 + +0.0 177,873 - +0.0
Or see this region's nucleotide sequence