Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0143

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0142 and Rru_A0143 are separated by 78 nucleotidesRru_A0143 and Rru_A0144 overlap by 14 nucleotides Rru_A0142: Rru_A0142 - Putative cyclase (NCBI), at 165,819 to 166,781 _A0142 Rru_A0143: Rru_A0143 - GCN5-related N-acetyltransferase (NCBI), at 166,860 to 167,525 _A0143 Rru_A0144: Rru_A0144 - NADH:flavin oxidoreductase/NADH oxidase (NCBI), at 167,512 to 168,615 _A0144 Position (kb) 166 167 168Strain fitness (log2 ratio) -1 0 1 2at 165.946 kb on + strand, within Rru_A0142at 165.946 kb on + strand, within Rru_A0142at 165.946 kb on + strand, within Rru_A0142at 165.947 kb on - strand, within Rru_A0142at 165.947 kb on - strand, within Rru_A0142at 166.106 kb on + strand, within Rru_A0142at 166.107 kb on - strand, within Rru_A0142at 166.318 kb on + strand, within Rru_A0142at 166.319 kb on - strand, within Rru_A0142at 166.319 kb on - strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.379 kb on - strand, within Rru_A0142at 166.379 kb on - strand, within Rru_A0142at 166.379 kb on - strand, within Rru_A0142at 166.379 kb on - strand, within Rru_A0142at 166.379 kb on - strand, within Rru_A0142at 166.471 kb on + strand, within Rru_A0142at 166.471 kb on + strand, within Rru_A0142at 166.471 kb on + strand, within Rru_A0142at 166.471 kb on + strand, within Rru_A0142at 166.471 kb on + strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.499 kb on + strand, within Rru_A0142at 166.501 kb on + strand, within Rru_A0142at 166.501 kb on + strand, within Rru_A0142at 166.501 kb on + strand, within Rru_A0142at 166.502 kb on - strand, within Rru_A0142at 166.502 kb on - strand, within Rru_A0142at 166.502 kb on - strand, within Rru_A0142at 166.502 kb on - strand, within Rru_A0142at 166.529 kb on - strand, within Rru_A0142at 166.630 kb on + strand, within Rru_A0142at 166.630 kb on + strand, within Rru_A0142at 166.630 kb on + strand, within Rru_A0142at 166.631 kb on - strand, within Rru_A0142at 166.631 kb on - strand, within Rru_A0142at 166.825 kb on + strandat 166.826 kb on - strandat 166.826 kb on - strandat 166.827 kb on + strandat 166.828 kb on - strandat 166.828 kb on - strandat 166.828 kb on - strandat 166.828 kb on - strandat 166.878 kb on + strandat 166.879 kb on - strandat 166.945 kb on - strand, within Rru_A0143at 166.945 kb on - strand, within Rru_A0143at 166.945 kb on - strand, within Rru_A0143at 166.945 kb on - strand, within Rru_A0143at 166.945 kb on - strand, within Rru_A0143at 166.945 kb on - strand, within Rru_A0143at 167.009 kb on + strand, within Rru_A0143at 167.009 kb on + strand, within Rru_A0143at 167.009 kb on + strand, within Rru_A0143at 167.010 kb on - strand, within Rru_A0143at 167.010 kb on - strand, within Rru_A0143at 167.148 kb on + strand, within Rru_A0143at 167.148 kb on + strand, within Rru_A0143at 167.148 kb on + strand, within Rru_A0143at 167.148 kb on + strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.153 kb on + strand, within Rru_A0143at 167.154 kb on - strand, within Rru_A0143at 167.200 kb on + strand, within Rru_A0143at 167.513 kb on + strandat 167.561 kb on + strandat 167.561 kb on + strandat 167.562 kb on - strandat 167.562 kb on - strandat 167.627 kb on + strand, within Rru_A0144at 167.627 kb on + strand, within Rru_A0144at 167.628 kb on - strand, within Rru_A0144at 167.628 kb on - strand, within Rru_A0144at 167.821 kb on + strand, within Rru_A0144at 167.821 kb on + strand, within Rru_A0144at 167.821 kb on + strand, within Rru_A0144at 167.821 kb on + strand, within Rru_A0144at 167.822 kb on - strand, within Rru_A0144at 167.822 kb on - strand, within Rru_A0144at 167.871 kb on + strand, within Rru_A0144at 167.872 kb on - strand, within Rru_A0144at 168.014 kb on + strand, within Rru_A0144at 168.014 kb on + strand, within Rru_A0144at 168.015 kb on - strand, within Rru_A0144at 168.065 kb on + strand, within Rru_A0144at 168.066 kb on - strand, within Rru_A0144

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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165,946 + Rru_A0142 0.13 +0.0
165,946 + Rru_A0142 0.13 -1.0
165,946 + Rru_A0142 0.13 +0.2
165,947 - Rru_A0142 0.13 +2.0
165,947 - Rru_A0142 0.13 +1.5
166,106 + Rru_A0142 0.30 -0.4
166,107 - Rru_A0142 0.30 +1.5
166,318 + Rru_A0142 0.52 +0.0
166,319 - Rru_A0142 0.52 +0.0
166,319 - Rru_A0142 0.52 +0.0
166,378 + Rru_A0142 0.58 +0.7
166,378 + Rru_A0142 0.58 +0.0
166,378 + Rru_A0142 0.58 +0.4
166,378 + Rru_A0142 0.58 +0.0
166,378 + Rru_A0142 0.58 +0.7
166,378 + Rru_A0142 0.58 +0.0
166,378 + Rru_A0142 0.58 +0.0
166,378 + Rru_A0142 0.58 +0.2
166,378 + Rru_A0142 0.58 +0.6
166,379 - Rru_A0142 0.58 +0.9
166,379 - Rru_A0142 0.58 +0.1
166,379 - Rru_A0142 0.58 +0.9
166,379 - Rru_A0142 0.58 -1.0
166,379 - Rru_A0142 0.58 +0.9
166,471 + Rru_A0142 0.68 +0.2
166,471 + Rru_A0142 0.68 +0.8
166,471 + Rru_A0142 0.68 +0.1
166,471 + Rru_A0142 0.68 +0.6
166,471 + Rru_A0142 0.68 +0.9
166,472 - Rru_A0142 0.68 +0.6
166,472 - Rru_A0142 0.68 +0.0
166,472 - Rru_A0142 0.68 +0.7
166,472 - Rru_A0142 0.68 +0.3
166,472 - Rru_A0142 0.68 -1.0
166,472 - Rru_A0142 0.68 +1.4
166,499 + Rru_A0142 0.71 +0.0
166,501 + Rru_A0142 0.71 +0.9
166,501 + Rru_A0142 0.71 +1.6
166,501 + Rru_A0142 0.71 +0.3
166,502 - Rru_A0142 0.71 +0.0
166,502 - Rru_A0142 0.71 +0.0
166,502 - Rru_A0142 0.71 +0.0
166,502 - Rru_A0142 0.71 +0.3
166,529 - Rru_A0142 0.74 +0.3
166,630 + Rru_A0142 0.84 +1.3
166,630 + Rru_A0142 0.84 +0.0
166,630 + Rru_A0142 0.84 +0.8
166,631 - Rru_A0142 0.84 +0.4
166,631 - Rru_A0142 0.84 -0.3
166,825 + -0.1
166,826 - -0.9
166,826 - +0.0
166,827 + +0.0
166,828 - -0.7
166,828 - -1.0
166,828 - +0.0
166,828 - +0.3
166,878 + +0.0
166,879 - +0.0
166,945 - Rru_A0143 0.13 +0.0
166,945 - Rru_A0143 0.13 +2.1
166,945 - Rru_A0143 0.13 +1.7
166,945 - Rru_A0143 0.13 -1.0
166,945 - Rru_A0143 0.13 +0.0
166,945 - Rru_A0143 0.13 +1.1
167,009 + Rru_A0143 0.22 +0.0
167,009 + Rru_A0143 0.22 -1.0
167,009 + Rru_A0143 0.22 +0.3
167,010 - Rru_A0143 0.23 +2.1
167,010 - Rru_A0143 0.23 +0.3
167,148 + Rru_A0143 0.43 +0.0
167,148 + Rru_A0143 0.43 +1.0
167,148 + Rru_A0143 0.43 +0.0
167,148 + Rru_A0143 0.43 +0.0
167,149 - Rru_A0143 0.43 +0.0
167,149 - Rru_A0143 0.43 +0.0
167,149 - Rru_A0143 0.43 +0.0
167,149 - Rru_A0143 0.43 +0.0
167,149 - Rru_A0143 0.43 +0.0
167,149 - Rru_A0143 0.43 +0.8
167,149 - Rru_A0143 0.43 -0.2
167,149 - Rru_A0143 0.43 +0.0
167,153 + Rru_A0143 0.44 +0.0
167,154 - Rru_A0143 0.44 +0.8
167,200 + Rru_A0143 0.51 +0.6
167,513 + +0.0
167,561 + +0.0
167,561 + +0.0
167,562 - +0.7
167,562 - +1.0
167,627 + Rru_A0144 0.10 +0.0
167,627 + Rru_A0144 0.10 +0.2
167,628 - Rru_A0144 0.11 +0.1
167,628 - Rru_A0144 0.11 +0.0
167,821 + Rru_A0144 0.28 +0.2
167,821 + Rru_A0144 0.28 +0.5
167,821 + Rru_A0144 0.28 +0.6
167,821 + Rru_A0144 0.28 -1.0
167,822 - Rru_A0144 0.28 +0.0
167,822 - Rru_A0144 0.28 +0.0
167,871 + Rru_A0144 0.33 +1.0
167,872 - Rru_A0144 0.33 +0.0
168,014 + Rru_A0144 0.45 +0.0
168,014 + Rru_A0144 0.45 +1.1
168,015 - Rru_A0144 0.46 +0.1
168,065 + Rru_A0144 0.50 +1.0
168,066 - Rru_A0144 0.50 -0.9

Or see this region's nucleotide sequence