Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0132

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0131 and Rru_A0132 are separated by 19 nucleotidesRru_A0132 and Rru_A0133 are separated by 231 nucleotides Rru_A0131: Rru_A0131 - Response regulator receiver (CheY) and unknown domain protein (NCBI), at 153,176 to 154,189 _A0131 Rru_A0132: Rru_A0132 - Peptidase S13, D-Ala-D-Ala carboxypeptidase C (NCBI), at 154,209 to 155,795 _A0132 Rru_A0133: Rru_A0133 - Glycosyl transferase, group 1 (NCBI), at 156,027 to 157,061 _A0133 Position (kb) 154 155 156Strain fitness (log2 ratio) -2 -1 0 1 2at 153.347 kb on + strand, within Rru_A0131at 153.347 kb on + strand, within Rru_A0131at 153.347 kb on + strand, within Rru_A0131at 153.347 kb on + strand, within Rru_A0131at 153.348 kb on - strand, within Rru_A0131at 153.356 kb on + strand, within Rru_A0131at 153.507 kb on + strand, within Rru_A0131at 153.507 kb on + strand, within Rru_A0131at 153.507 kb on + strand, within Rru_A0131at 153.508 kb on - strand, within Rru_A0131at 153.508 kb on - strand, within Rru_A0131at 153.557 kb on + strand, within Rru_A0131at 153.557 kb on + strand, within Rru_A0131at 153.557 kb on + strand, within Rru_A0131at 153.557 kb on + strand, within Rru_A0131at 153.558 kb on - strand, within Rru_A0131at 153.558 kb on - strand, within Rru_A0131at 153.558 kb on - strand, within Rru_A0131at 153.558 kb on - strand, within Rru_A0131at 153.558 kb on - strand, within Rru_A0131at 153.573 kb on - strand, within Rru_A0131at 153.639 kb on - strand, within Rru_A0131at 153.710 kb on + strand, within Rru_A0131at 153.710 kb on + strand, within Rru_A0131at 153.711 kb on - strand, within Rru_A0131at 153.875 kb on + strand, within Rru_A0131at 153.875 kb on + strand, within Rru_A0131at 153.875 kb on + strand, within Rru_A0131at 153.992 kb on + strand, within Rru_A0131at 153.992 kb on + strand, within Rru_A0131at 153.992 kb on + strand, within Rru_A0131at 153.993 kb on - strand, within Rru_A0131at 153.993 kb on - strand, within Rru_A0131at 153.993 kb on - strand, within Rru_A0131at 154.093 kb on + strandat 154.093 kb on + strandat 154.093 kb on + strandat 154.093 kb on + strandat 154.093 kb on + strandat 154.094 kb on - strandat 154.094 kb on - strandat 154.213 kb on + strandat 154.213 kb on + strandat 154.213 kb on + strandat 154.214 kb on - strandat 154.214 kb on - strandat 154.214 kb on - strandat 154.394 kb on + strand, within Rru_A0132at 154.395 kb on - strand, within Rru_A0132at 154.396 kb on + strand, within Rru_A0132at 154.396 kb on + strand, within Rru_A0132at 154.397 kb on - strand, within Rru_A0132at 154.420 kb on + strand, within Rru_A0132at 154.420 kb on + strand, within Rru_A0132at 154.420 kb on + strand, within Rru_A0132at 154.421 kb on - strand, within Rru_A0132at 154.421 kb on - strand, within Rru_A0132at 154.525 kb on + strand, within Rru_A0132at 154.525 kb on + strand, within Rru_A0132at 154.558 kb on + strand, within Rru_A0132at 154.558 kb on + strand, within Rru_A0132at 154.559 kb on - strand, within Rru_A0132at 154.559 kb on - strand, within Rru_A0132at 154.821 kb on + strand, within Rru_A0132at 155.065 kb on + strand, within Rru_A0132at 155.065 kb on + strand, within Rru_A0132at 155.065 kb on + strand, within Rru_A0132at 155.065 kb on + strand, within Rru_A0132at 155.242 kb on + strand, within Rru_A0132at 155.242 kb on + strand, within Rru_A0132at 155.242 kb on + strand, within Rru_A0132at 155.242 kb on + strand, within Rru_A0132at 155.305 kb on + strand, within Rru_A0132at 155.306 kb on - strand, within Rru_A0132at 155.410 kb on + strand, within Rru_A0132at 155.410 kb on + strand, within Rru_A0132at 155.410 kb on + strand, within Rru_A0132at 155.410 kb on + strand, within Rru_A0132at 155.410 kb on + strand, within Rru_A0132at 155.411 kb on - strand, within Rru_A0132at 155.411 kb on - strand, within Rru_A0132at 155.477 kb on - strand, within Rru_A0132at 155.558 kb on + strand, within Rru_A0132at 155.799 kb on + strandat 155.799 kb on + strandat 155.800 kb on - strandat 155.972 kb on + strandat 155.972 kb on + strandat 155.972 kb on + strandat 155.973 kb on - strandat 155.973 kb on - strandat 155.973 kb on - strandat 155.973 kb on - strandat 155.973 kb on - strandat 155.974 kb on + strandat 156.007 kb on + strandat 156.007 kb on + strandat 156.008 kb on - strandat 156.137 kb on + strand, within Rru_A0133at 156.138 kb on - strand, within Rru_A0133at 156.178 kb on - strand, within Rru_A0133at 156.333 kb on + strand, within Rru_A0133at 156.333 kb on + strand, within Rru_A0133at 156.333 kb on + strand, within Rru_A0133at 156.354 kb on + strand, within Rru_A0133at 156.354 kb on + strand, within Rru_A0133at 156.354 kb on + strand, within Rru_A0133at 156.355 kb on - strand, within Rru_A0133at 156.355 kb on - strand, within Rru_A0133at 156.355 kb on - strand, within Rru_A0133at 156.355 kb on - strand, within Rru_A0133at 156.355 kb on - strand, within Rru_A0133at 156.393 kb on + strand, within Rru_A0133at 156.393 kb on + strand, within Rru_A0133at 156.393 kb on + strand, within Rru_A0133at 156.393 kb on + strand, within Rru_A0133at 156.393 kb on + strand, within Rru_A0133at 156.394 kb on - strand, within Rru_A0133at 156.394 kb on - strand, within Rru_A0133at 156.394 kb on - strand, within Rru_A0133at 156.394 kb on - strand, within Rru_A0133at 156.395 kb on + strand, within Rru_A0133at 156.395 kb on + strand, within Rru_A0133at 156.395 kb on + strand, within Rru_A0133at 156.395 kb on + strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.576 kb on + strand, within Rru_A0133at 156.576 kb on + strand, within Rru_A0133at 156.576 kb on + strand, within Rru_A0133

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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153,347 + Rru_A0131 0.17 +1.3
153,347 + Rru_A0131 0.17 -0.5
153,347 + Rru_A0131 0.17 +0.2
153,347 + Rru_A0131 0.17 +0.0
153,348 - Rru_A0131 0.17 +1.2
153,356 + Rru_A0131 0.18 +0.0
153,507 + Rru_A0131 0.33 +0.4
153,507 + Rru_A0131 0.33 +0.0
153,507 + Rru_A0131 0.33 +0.0
153,508 - Rru_A0131 0.33 +0.0
153,508 - Rru_A0131 0.33 -1.0
153,557 + Rru_A0131 0.38 +0.0
153,557 + Rru_A0131 0.38 -1.0
153,557 + Rru_A0131 0.38 -0.1
153,557 + Rru_A0131 0.38 +0.3
153,558 - Rru_A0131 0.38 +0.0
153,558 - Rru_A0131 0.38 +0.6
153,558 - Rru_A0131 0.38 +0.0
153,558 - Rru_A0131 0.38 +0.2
153,558 - Rru_A0131 0.38 +1.0
153,573 - Rru_A0131 0.39 +0.0
153,639 - Rru_A0131 0.46 -0.1
153,710 + Rru_A0131 0.53 -1.0
153,710 + Rru_A0131 0.53 -0.2
153,711 - Rru_A0131 0.53 -0.1
153,875 + Rru_A0131 0.69 +0.0
153,875 + Rru_A0131 0.69 -1.6
153,875 + Rru_A0131 0.69 +0.0
153,992 + Rru_A0131 0.80 -1.0
153,992 + Rru_A0131 0.80 -0.4
153,992 + Rru_A0131 0.80 +0.0
153,993 - Rru_A0131 0.81 +0.8
153,993 - Rru_A0131 0.81 +0.6
153,993 - Rru_A0131 0.81 +0.8
154,093 + +0.6
154,093 + +0.4
154,093 + +0.0
154,093 + +0.3
154,093 + -0.5
154,094 - -0.5
154,094 - +0.0
154,213 + +0.0
154,213 + +2.2
154,213 + -1.6
154,214 - +0.2
154,214 - +0.0
154,214 - -1.2
154,394 + Rru_A0132 0.12 +0.0
154,395 - Rru_A0132 0.12 +0.0
154,396 + Rru_A0132 0.12 -1.0
154,396 + Rru_A0132 0.12 +0.0
154,397 - Rru_A0132 0.12 +1.0
154,420 + Rru_A0132 0.13 +0.0
154,420 + Rru_A0132 0.13 +0.5
154,420 + Rru_A0132 0.13 +0.6
154,421 - Rru_A0132 0.13 +0.8
154,421 - Rru_A0132 0.13 +0.0
154,525 + Rru_A0132 0.20 +0.5
154,525 + Rru_A0132 0.20 +0.5
154,558 + Rru_A0132 0.22 +0.2
154,558 + Rru_A0132 0.22 +1.0
154,559 - Rru_A0132 0.22 -1.0
154,559 - Rru_A0132 0.22 +0.2
154,821 + Rru_A0132 0.39 -1.0
155,065 + Rru_A0132 0.54 +0.0
155,065 + Rru_A0132 0.54 +1.0
155,065 + Rru_A0132 0.54 +0.2
155,065 + Rru_A0132 0.54 +0.7
155,242 + Rru_A0132 0.65 +0.0
155,242 + Rru_A0132 0.65 +0.3
155,242 + Rru_A0132 0.65 -2.0
155,242 + Rru_A0132 0.65 +1.8
155,305 + Rru_A0132 0.69 +1.7
155,306 - Rru_A0132 0.69 +0.4
155,410 + Rru_A0132 0.76 +1.5
155,410 + Rru_A0132 0.76 +0.5
155,410 + Rru_A0132 0.76 +0.9
155,410 + Rru_A0132 0.76 +0.0
155,410 + Rru_A0132 0.76 +0.5
155,411 - Rru_A0132 0.76 +0.2
155,411 - Rru_A0132 0.76 +0.2
155,477 - Rru_A0132 0.80 +0.0
155,558 + Rru_A0132 0.85 +0.0
155,799 + +0.8
155,799 + +0.0
155,800 - +0.0
155,972 + +0.9
155,972 + +0.0
155,972 + -0.7
155,973 - +0.0
155,973 - +0.2
155,973 - +0.0
155,973 - +1.3
155,973 - +1.1
155,974 + +0.4
156,007 + +0.0
156,007 + +0.8
156,008 - -1.0
156,137 + Rru_A0133 0.11 +0.0
156,138 - Rru_A0133 0.11 +0.5
156,178 - Rru_A0133 0.15 +0.9
156,333 + Rru_A0133 0.30 -0.2
156,333 + Rru_A0133 0.30 +0.5
156,333 + Rru_A0133 0.30 -0.0
156,354 + Rru_A0133 0.32 +0.0
156,354 + Rru_A0133 0.32 +0.0
156,354 + Rru_A0133 0.32 +0.2
156,355 - Rru_A0133 0.32 +0.3
156,355 - Rru_A0133 0.32 -1.0
156,355 - Rru_A0133 0.32 +0.0
156,355 - Rru_A0133 0.32 +0.2
156,355 - Rru_A0133 0.32 +0.0
156,393 + Rru_A0133 0.35 +0.0
156,393 + Rru_A0133 0.35 +0.9
156,393 + Rru_A0133 0.35 -0.6
156,393 + Rru_A0133 0.35 +0.4
156,393 + Rru_A0133 0.35 +0.5
156,394 - Rru_A0133 0.35 +0.7
156,394 - Rru_A0133 0.35 +0.5
156,394 - Rru_A0133 0.35 -0.2
156,394 - Rru_A0133 0.35 +0.5
156,395 + Rru_A0133 0.36 +0.0
156,395 + Rru_A0133 0.36 +0.3
156,395 + Rru_A0133 0.36 +0.0
156,395 + Rru_A0133 0.36 -0.5
156,396 - Rru_A0133 0.36 +0.2
156,396 - Rru_A0133 0.36 +0.2
156,396 - Rru_A0133 0.36 +0.0
156,396 - Rru_A0133 0.36 +0.0
156,396 - Rru_A0133 0.36 +0.1
156,396 - Rru_A0133 0.36 +0.1
156,396 - Rru_A0133 0.36 +0.1
156,396 - Rru_A0133 0.36 +1.0
156,576 + Rru_A0133 0.53 +0.0
156,576 + Rru_A0133 0.53 +1.1
156,576 + Rru_A0133 0.53 +0.1

Or see this region's nucleotide sequence