Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0128 and Rru_A0129 are separated by 100 nucleotides Rru_A0129 and Rru_AR0003 are separated by 225 nucleotides Rru_AR0003 and Rru_A0130 are separated by 136 nucleotides
Rru_A0128: Rru_A0128 - Na+/H+ antiporter NhaA (NCBI), at 148,621 to 149,820
_A0128
Rru_A0129: Rru_A0129 - hypothetical protein (NCBI), at 149,921 to 151,015
_A0129
Rru_AR0003: Rru_AR0003 - tRNA-Arg (NCBI), at 151,241 to 151,317
_AR0003
Rru_A0130: Rru_A0130 - chemotaxis sensory transducer (NCBI), at 151,454 to 152,929
_A0130
Position (kb) 149
150
151
152 Strain fitness (log2 ratio) -2
-1
0
1 at 149.022 kb on - strand, within Rru_A0128 at 149.022 kb on - strand, within Rru_A0128 at 149.227 kb on - strand, within Rru_A0128 at 149.227 kb on - strand, within Rru_A0128 at 149.295 kb on - strand, within Rru_A0128 at 149.484 kb on - strand, within Rru_A0128 at 149.484 kb on - strand, within Rru_A0128 at 149.484 kb on - strand, within Rru_A0128 at 149.843 kb on + strand at 149.873 kb on - strand at 149.873 kb on - strand at 149.873 kb on - strand at 149.884 kb on - strand at 149.884 kb on - strand at 149.942 kb on + strand at 149.943 kb on - strand at 150.336 kb on - strand, within Rru_A0129 at 150.363 kb on + strand, within Rru_A0129 at 150.363 kb on + strand, within Rru_A0129 at 150.843 kb on + strand, within Rru_A0129 at 151.175 kb on + strand at 151.220 kb on + strand at 151.456 kb on - strand at 151.456 kb on - strand at 151.460 kb on + strand at 151.460 kb on + strand at 151.549 kb on + strand at 151.549 kb on + strand at 151.550 kb on - strand at 151.550 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 149,022 - Rru_A0128 0.33 +0.5 149,022 - Rru_A0128 0.33 +0.0 149,227 - Rru_A0128 0.51 +0.0 149,227 - Rru_A0128 0.51 -2.0 149,295 - Rru_A0128 0.56 -1.6 149,484 - Rru_A0128 0.72 +1.0 149,484 - Rru_A0128 0.72 +0.0 149,484 - Rru_A0128 0.72 +0.0 149,843 + +0.0 149,873 - +1.1 149,873 - +0.0 149,873 - +0.0 149,884 - +0.0 149,884 - +0.0 149,942 + +0.0 149,943 - +0.0 150,336 - Rru_A0129 0.38 +1.4 150,363 + Rru_A0129 0.40 -1.6 150,363 + Rru_A0129 0.40 +0.9 150,843 + Rru_A0129 0.84 -1.0 151,175 + +0.3 151,220 + +0.0 151,456 - +0.8 151,456 - +0.6 151,460 + +0.0 151,460 + +0.0 151,549 + +0.0 151,549 + -0.7 151,550 - +0.0 151,550 - +0.0
Or see this region's nucleotide sequence