Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0120 and Rru_A0121 are separated by 7 nucleotides Rru_A0121 and Rru_A0122 are separated by 17 nucleotides Rru_A0122 and Rru_A0123 overlap by 1 nucleotides
Rru_A0120: Rru_A0120 - chemotaxis sensory transducer (NCBI), at 140,025 to 141,362
_A0120
Rru_A0121: Rru_A0121 - hypothetical protein (NCBI), at 141,370 to 142,092
_A0121
Rru_A0122: Rru_A0122 - hypothetical protein (NCBI), at 142,110 to 142,472
_A0122
Rru_A0123: Rru_A0123 - RfaE-HldE bifunctional protein, D-beta-D-heptose 7-phosphate kinase, D-beta-D-heptose 1-phosphate adenosyltransferase (NCBI), at 142,472 to 143,962
_A0123
Position (kb) 141
142
143 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 140.395 kb on - strand, within Rru_A0120 at 140.490 kb on + strand, within Rru_A0120 at 140.490 kb on + strand, within Rru_A0120 at 140.490 kb on + strand, within Rru_A0120 at 140.491 kb on - strand, within Rru_A0120 at 140.491 kb on - strand, within Rru_A0120 at 140.491 kb on - strand, within Rru_A0120 at 140.492 kb on + strand, within Rru_A0120 at 140.492 kb on + strand, within Rru_A0120 at 140.492 kb on + strand, within Rru_A0120 at 140.493 kb on - strand, within Rru_A0120 at 140.493 kb on - strand, within Rru_A0120 at 140.493 kb on - strand, within Rru_A0120 at 140.493 kb on - strand, within Rru_A0120 at 140.493 kb on - strand, within Rru_A0120 at 140.493 kb on - strand, within Rru_A0120 at 140.493 kb on - strand, within Rru_A0120 at 140.620 kb on + strand, within Rru_A0120 at 140.902 kb on + strand, within Rru_A0120 at 140.903 kb on - strand, within Rru_A0120 at 141.260 kb on + strand at 141.260 kb on + strand at 141.260 kb on + strand at 141.261 kb on - strand at 141.287 kb on - strand at 141.287 kb on - strand at 141.507 kb on + strand, within Rru_A0121 at 141.508 kb on - strand, within Rru_A0121 at 141.508 kb on - strand, within Rru_A0121 at 141.741 kb on - strand, within Rru_A0121 at 141.741 kb on - strand, within Rru_A0121 at 141.745 kb on + strand, within Rru_A0121 at 141.746 kb on - strand, within Rru_A0121 at 141.771 kb on + strand, within Rru_A0121 at 141.771 kb on + strand, within Rru_A0121 at 141.771 kb on + strand, within Rru_A0121 at 142.145 kb on + strand at 142.145 kb on + strand at 142.145 kb on + strand at 142.145 kb on + strand at 142.145 kb on + strand at 142.146 kb on - strand at 142.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 140,395 - Rru_A0120 0.28 +1.6 140,490 + Rru_A0120 0.35 +0.0 140,490 + Rru_A0120 0.35 -0.1 140,490 + Rru_A0120 0.35 +0.3 140,491 - Rru_A0120 0.35 +0.4 140,491 - Rru_A0120 0.35 +0.8 140,491 - Rru_A0120 0.35 -1.0 140,492 + Rru_A0120 0.35 -0.7 140,492 + Rru_A0120 0.35 +0.0 140,492 + Rru_A0120 0.35 -0.2 140,493 - Rru_A0120 0.35 -0.4 140,493 - Rru_A0120 0.35 +0.0 140,493 - Rru_A0120 0.35 -0.7 140,493 - Rru_A0120 0.35 +0.0 140,493 - Rru_A0120 0.35 -0.2 140,493 - Rru_A0120 0.35 +0.0 140,493 - Rru_A0120 0.35 -0.0 140,620 + Rru_A0120 0.44 +0.7 140,902 + Rru_A0120 0.66 +1.6 140,903 - Rru_A0120 0.66 -0.9 141,260 + +0.0 141,260 + +0.0 141,260 + -1.0 141,261 - +0.0 141,287 - +2.3 141,287 - +0.1 141,507 + Rru_A0121 0.19 -0.6 141,508 - Rru_A0121 0.19 +1.1 141,508 - Rru_A0121 0.19 -1.0 141,741 - Rru_A0121 0.51 +0.0 141,741 - Rru_A0121 0.51 +0.8 141,745 + Rru_A0121 0.52 +1.0 141,746 - Rru_A0121 0.52 +0.0 141,771 + Rru_A0121 0.55 +1.0 141,771 + Rru_A0121 0.55 +1.3 141,771 + Rru_A0121 0.55 +1.5 142,145 + +3.8 142,145 + +1.4 142,145 + +2.6 142,145 + +1.5 142,145 + -1.0 142,146 - +0.0 142,146 - +0.2
Or see this region's nucleotide sequence