Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0114 and Rru_A0115 are separated by 75 nucleotides Rru_A0115 and Rru_A0116 overlap by 4 nucleotides Rru_A0116 and Rru_A0117 overlap by 4 nucleotides
Rru_A0114: Rru_A0114 - type II secretion system protein (NCBI), at 133,573 to 134,808
_A0114
Rru_A0115: Rru_A0115 - hypothetical protein (NCBI), at 134,884 to 136,362
_A0115
Rru_A0116: Rru_A0116 - hypothetical protein (NCBI), at 136,359 to 137,330
_A0116
Rru_A0117: Rru_A0117 - ABC transporter component (NCBI), at 137,327 to 138,064
_A0117
Position (kb) 134
135
136
137 Strain fitness (log2 ratio) -1
0
1
2 at 134.162 kb on + strand, within Rru_A0114 at 134.780 kb on - strand at 134.780 kb on - strand at 134.811 kb on - strand at 134.830 kb on - strand at 134.830 kb on - strand at 134.851 kb on - strand at 134.852 kb on + strand at 134.852 kb on + strand at 134.852 kb on + strand at 134.852 kb on + strand at 134.852 kb on + strand at 134.853 kb on - strand at 134.853 kb on - strand at 134.853 kb on - strand at 134.860 kb on + strand at 134.860 kb on + strand at 134.860 kb on + strand at 134.861 kb on - strand at 134.861 kb on - strand at 135.556 kb on + strand, within Rru_A0115 at 135.556 kb on + strand, within Rru_A0115 at 135.556 kb on + strand, within Rru_A0115 at 135.557 kb on - strand, within Rru_A0115 at 135.557 kb on - strand, within Rru_A0115 at 135.785 kb on + strand, within Rru_A0115 at 135.785 kb on + strand, within Rru_A0115 at 135.786 kb on - strand, within Rru_A0115 at 135.786 kb on - strand, within Rru_A0115 at 135.786 kb on - strand, within Rru_A0115 at 136.703 kb on + strand, within Rru_A0116 at 136.703 kb on + strand, within Rru_A0116 at 136.704 kb on - strand, within Rru_A0116 at 137.167 kb on - strand, within Rru_A0116 at 137.167 kb on - strand, within Rru_A0116 at 137.292 kb on + strand at 137.293 kb on - strand at 137.327 kb on - strand at 137.327 kb on - strand at 137.327 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 134,162 + Rru_A0114 0.48 -0.9 134,780 - +0.1 134,780 - +0.0 134,811 - +0.0 134,830 - +0.0 134,830 - -0.1 134,851 - +2.6 134,852 + +0.0 134,852 + +0.9 134,852 + +0.0 134,852 + +0.0 134,852 + +0.0 134,853 - +0.9 134,853 - +0.2 134,853 - +0.1 134,860 + +1.0 134,860 + +0.6 134,860 + -1.0 134,861 - +0.2 134,861 - +0.0 135,556 + Rru_A0115 0.45 +0.3 135,556 + Rru_A0115 0.45 -0.2 135,556 + Rru_A0115 0.45 +0.0 135,557 - Rru_A0115 0.46 +0.7 135,557 - Rru_A0115 0.46 +0.0 135,785 + Rru_A0115 0.61 -1.0 135,785 + Rru_A0115 0.61 +0.4 135,786 - Rru_A0115 0.61 +1.5 135,786 - Rru_A0115 0.61 +0.0 135,786 - Rru_A0115 0.61 +1.5 136,703 + Rru_A0116 0.35 +1.7 136,703 + Rru_A0116 0.35 +0.6 136,704 - Rru_A0116 0.35 +0.9 137,167 - Rru_A0116 0.83 +0.3 137,167 - Rru_A0116 0.83 +0.6 137,292 + +0.0 137,293 - +1.1 137,327 - +0.0 137,327 - +0.9 137,327 - +0.0
Or see this region's nucleotide sequence