Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0104

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
116,975	+				-0.9
116,976	-				-0.6
116,991	+				-0.5
116,991	+				+0.0
116,991	+				+0.0
116,992	-				+0.4
116,992	-				+0.0
116,992	-				+0.0
116,992	-				-0.3
117,017	+				+0.0
117,018	-				-1.1
117,067	+				+0.4
117,067	+				+0.2
117,067	+				-0.3
117,067	+				+0.0
117,067	+				+0.0
117,067	+				-0.3
117,067	+				+0.0
117,068	-				+0.0
117,068	-				-0.5
117,068	-				-1.2
117,068	-				-1.6
117,068	-				+0.0
117,068	-				+0.0
117,068	-				-0.7
117,068	-				+0.0
117,068	-				+0.0
117,266	+				+0.0
117,266	+				+0.0
117,282	+				-1.8
117,282	+				-1.0
117,283	-				+0.0
117,421	-				+0.4
117,421	-				-1.0
117,479	+				+0.0
117,479	+				-0.7
117,551	+				-3.5
117,551	+				+0.0
117,551	+				-3.2
117,634	-				+1.6
117,634	-				+1.1
117,649	+				-0.2
117,649	+				-2.0
117,652	+				-0.6
117,661	-				+2.0
117,947	+				+1.7
117,947	+				+0.0
117,947	+				+1.5
117,947	+				+1.8
117,947	+				+0.0
117,948	-				+2.1
118,107	-				+1.7
118,427	+		Rru_A0104	0.13	+2.4
118,427	+		Rru_A0104	0.13	+2.0
118,427	+		Rru_A0104	0.13	+1.5
118,427	+		Rru_A0104	0.13	+1.1
118,427	+		Rru_A0104	0.13	+0.0
118,428	-		Rru_A0104	0.13	+1.6
118,634	+		Rru_A0104	0.17	+0.9
118,634	+		Rru_A0104	0.17	+1.2
118,634	+		Rru_A0104	0.17	+2.0
118,634	+		Rru_A0104	0.17	+2.0
118,634	+		Rru_A0104	0.17	+1.2
118,635	-		Rru_A0104	0.17	+2.3
118,635	-		Rru_A0104	0.17	+2.7
118,635	-		Rru_A0104	0.17	+2.1
118,635	-		Rru_A0104	0.17	+0.0
118,635	-		Rru_A0104	0.17	+1.5
118,635	-		Rru_A0104	0.17	+1.6
118,636	+		Rru_A0104	0.17	+0.0
118,917	-		Rru_A0104	0.22	+1.9
118,917	-		Rru_A0104	0.22	+1.6
118,917	-		Rru_A0104	0.22	+2.5
119,210	+		Rru_A0104	0.28	+1.7
119,211	-		Rru_A0104	0.28	+1.8
119,321	+		Rru_A0104	0.30	+0.0
119,322	-		Rru_A0104	0.30	+2.8
119,322	-		Rru_A0104	0.30	+1.9
119,322	-		Rru_A0104	0.30	+0.0
119,339	+		Rru_A0104	0.30	+1.7
119,717	+		Rru_A0104	0.37	+0.0
120,146	+		Rru_A0104	0.46	+2.0
120,146	+		Rru_A0104	0.46	+2.2
120,146	+		Rru_A0104	0.46	+0.0
120,147	-		Rru_A0104	0.46	+2.2
120,147	-		Rru_A0104	0.46	+1.9
120,147	-		Rru_A0104	0.46	+1.5
120,147	-		Rru_A0104	0.46	-0.4
120,147	-		Rru_A0104	0.46	+2.6
120,197	+		Rru_A0104	0.46	+2.4
120,400	+		Rru_A0104	0.50	+0.0
120,597	-		Rru_A0104	0.54	+0.0
120,597	-		Rru_A0104	0.54	+1.7
120,597	-		Rru_A0104	0.54	+2.4
120,597	-		Rru_A0104	0.54	+2.2
120,863	+		Rru_A0104	0.59	+0.8
120,864	-		Rru_A0104	0.59	+2.4
120,864	-		Rru_A0104	0.59	+2.5
120,864	-		Rru_A0104	0.59	+2.3
120,864	-		Rru_A0104	0.59	+1.6
120,864	-		Rru_A0104	0.59	+1.6
120,866	+		Rru_A0104	0.59	+0.6
120,866	+		Rru_A0104	0.59	+1.3
120,866	+		Rru_A0104	0.59	+1.6
120,866	+		Rru_A0104	0.59	+0.9
120,867	-		Rru_A0104	0.59	+0.0
120,867	-		Rru_A0104	0.59	+2.0
120,870	-		Rru_A0104	0.59	+1.7
120,908	+		Rru_A0104	0.60	-1.0
120,909	-		Rru_A0104	0.60	+3.0
120,909	-		Rru_A0104	0.60	+2.3
120,909	-		Rru_A0104	0.60	+2.6
121,246	+		Rru_A0104	0.66	+0.0
121,246	+		Rru_A0104	0.66	+2.1
121,246	+		Rru_A0104	0.66	+1.5
121,247	-		Rru_A0104	0.66	+1.6
121,247	-		Rru_A0104	0.66	+1.5
121,247	-		Rru_A0104	0.66	+1.8
121,646	+		Rru_A0104	0.74	+1.0
121,691	+		Rru_A0104	0.75	+1.6
121,847	+		Rru_A0104	0.78	+1.7
121,847	+		Rru_A0104	0.78	+2.1
121,848	-		Rru_A0104	0.78	+1.4
121,848	-		Rru_A0104	0.78	+2.6
121,985	+		Rru_A0104	0.80	+2.5
121,986	-		Rru_A0104	0.80	+2.3
121,994	+		Rru_A0104	0.81	+1.7
121,994	+		Rru_A0104	0.81	+2.3
121,995	-		Rru_A0104	0.81	+1.5
121,995	-		Rru_A0104	0.81	+1.9
121,995	-		Rru_A0104	0.81	+2.2
121,995	-		Rru_A0104	0.81	+1.9
122,051	-		Rru_A0104	0.82	+1.8
122,054	+		Rru_A0104	0.82	+1.5
122,054	+		Rru_A0104	0.82	+0.0
122,054	+		Rru_A0104	0.82	+1.2
122,054	+		Rru_A0104	0.82	+1.8
122,055	-		Rru_A0104	0.82	+1.6
122,055	-		Rru_A0104	0.82	+1.3
122,055	-		Rru_A0104	0.82	+1.3
122,055	-		Rru_A0104	0.82	+1.8
122,055	-		Rru_A0104	0.82	+1.6
122,202	-		Rru_A0104	0.84	+1.6
122,202	-		Rru_A0104	0.84	+1.9
122,849	+				+1.3
122,849	+				+2.6
122,849	+				+1.8
122,849	+				+1.4
122,850	-				+2.2
122,850	-				+1.9
122,900	+				+2.1
122,901	-				+2.0
122,901	-				+2.1
122,901	-				+1.8
122,959	+				+2.7
122,960	-				+1.8
123,262	+		Rru_A0105	0.11	+1.7
123,262	+		Rru_A0105	0.11	+2.1
123,262	+		Rru_A0105	0.11	+1.9
123,263	-		Rru_A0105	0.11	+1.6
123,517	+		Rru_A0105	0.23	+1.2
123,518	-		Rru_A0105	0.23	+1.2
124,007	-		Rru_A0105	0.46	+2.1