Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0099

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0098 and Rru_A0099 are separated by 80 nucleotidesRru_A0099 and Rru_A0100 are separated by 14 nucleotidesRru_A0100 and Rru_A0101 are separated by 58 nucleotides Rru_A0098: Rru_A0098 - Cystathionine gamma-synthase (NCBI), at 111,737 to 112,948 _A0098 Rru_A0099: Rru_A0099 - Serine phosphatase (NCBI), at 113,029 to 115,020 _A0099 Rru_A0100: Rru_A0100 - hypothetical protein (NCBI), at 115,035 to 115,379 _A0100 Rru_A0101: Rru_A0101 - hypothetical protein (NCBI), at 115,438 to 116,010 _A0101 Position (kb) 113 114 115 116Strain fitness (log2 ratio) -2 -1 0 1 2at 112.110 kb on + strand, within Rru_A0098at 112.110 kb on + strand, within Rru_A0098at 112.110 kb on + strand, within Rru_A0098at 112.111 kb on - strand, within Rru_A0098at 112.309 kb on - strand, within Rru_A0098at 112.309 kb on - strand, within Rru_A0098at 112.573 kb on + strand, within Rru_A0098at 112.603 kb on - strand, within Rru_A0098at 112.765 kb on + strand, within Rru_A0098at 112.767 kb on + strand, within Rru_A0098at 113.085 kb on + strandat 113.180 kb on + strandat 113.181 kb on - strandat 113.225 kb on + strandat 113.226 kb on - strandat 113.226 kb on - strandat 113.226 kb on - strandat 113.287 kb on - strand, within Rru_A0099at 113.287 kb on - strand, within Rru_A0099at 113.424 kb on - strand, within Rru_A0099at 113.424 kb on - strand, within Rru_A0099at 113.472 kb on + strand, within Rru_A0099at 113.472 kb on + strand, within Rru_A0099at 113.473 kb on - strand, within Rru_A0099at 113.473 kb on - strand, within Rru_A0099at 113.473 kb on - strand, within Rru_A0099at 113.473 kb on - strand, within Rru_A0099at 113.651 kb on + strand, within Rru_A0099at 113.651 kb on + strand, within Rru_A0099at 113.651 kb on + strand, within Rru_A0099at 113.652 kb on - strand, within Rru_A0099at 113.652 kb on - strand, within Rru_A0099at 113.652 kb on - strand, within Rru_A0099at 113.652 kb on - strand, within Rru_A0099at 113.655 kb on - strand, within Rru_A0099at 113.655 kb on - strand, within Rru_A0099at 113.655 kb on - strand, within Rru_A0099at 113.931 kb on + strand, within Rru_A0099at 114.112 kb on + strand, within Rru_A0099at 114.113 kb on - strand, within Rru_A0099at 114.307 kb on + strand, within Rru_A0099at 114.308 kb on - strand, within Rru_A0099at 114.460 kb on + strand, within Rru_A0099at 114.460 kb on + strand, within Rru_A0099at 114.460 kb on + strand, within Rru_A0099at 114.460 kb on + strand, within Rru_A0099at 114.460 kb on + strand, within Rru_A0099at 114.460 kb on + strand, within Rru_A0099at 114.461 kb on - strand, within Rru_A0099at 114.461 kb on - strand, within Rru_A0099at 114.461 kb on - strand, within Rru_A0099at 114.461 kb on - strand, within Rru_A0099at 114.602 kb on + strand, within Rru_A0099at 114.602 kb on + strand, within Rru_A0099at 114.602 kb on + strand, within Rru_A0099at 114.602 kb on + strand, within Rru_A0099at 114.602 kb on + strand, within Rru_A0099at 114.603 kb on - strand, within Rru_A0099at 114.603 kb on - strand, within Rru_A0099at 114.603 kb on - strand, within Rru_A0099at 114.603 kb on - strand, within Rru_A0099at 114.603 kb on - strand, within Rru_A0099at 114.603 kb on - strand, within Rru_A0099at 114.603 kb on - strand, within Rru_A0099at 114.603 kb on - strand, within Rru_A0099at 114.603 kb on - strand, within Rru_A0099at 114.749 kb on + strand, within Rru_A0099at 114.749 kb on + strand, within Rru_A0099at 114.749 kb on + strand, within Rru_A0099at 114.749 kb on + strand, within Rru_A0099at 114.798 kb on - strand, within Rru_A0099at 114.798 kb on - strand, within Rru_A0099at 114.831 kb on + strandat 114.831 kb on + strandat 114.890 kb on + strandat 114.953 kb on + strandat 114.953 kb on + strandat 114.953 kb on + strandat 114.953 kb on + strandat 114.953 kb on + strandat 114.953 kb on + strandat 114.953 kb on + strandat 114.953 kb on + strandat 114.953 kb on + strandat 114.954 kb on - strandat 114.954 kb on - strandat 114.954 kb on - strandat 114.954 kb on - strandat 115.280 kb on - strand, within Rru_A0100at 115.347 kb on + strandat 115.347 kb on + strandat 115.347 kb on + strandat 115.347 kb on + strandat 115.347 kb on + strandat 115.347 kb on + strandat 115.347 kb on + strandat 115.347 kb on + strandat 115.347 kb on + strandat 115.347 kb on + strandat 115.347 kb on + strandat 115.348 kb on - strandat 115.348 kb on - strandat 115.348 kb on - strandat 115.348 kb on - strandat 115.471 kb on + strandat 115.471 kb on + strandat 115.472 kb on - strandat 115.472 kb on - strandat 115.472 kb on - strandat 115.518 kb on + strand, within Rru_A0101at 115.519 kb on - strand, within Rru_A0101at 115.520 kb on + strand, within Rru_A0101at 115.521 kb on - strand, within Rru_A0101at 115.538 kb on - strand, within Rru_A0101at 115.595 kb on + strand, within Rru_A0101at 115.595 kb on + strand, within Rru_A0101at 115.596 kb on - strand, within Rru_A0101at 115.596 kb on - strand, within Rru_A0101at 115.635 kb on - strand, within Rru_A0101at 115.785 kb on + strand, within Rru_A0101at 115.787 kb on + strand, within Rru_A0101at 115.787 kb on + strand, within Rru_A0101at 115.787 kb on + strand, within Rru_A0101at 115.787 kb on + strand, within Rru_A0101at 115.787 kb on + strand, within Rru_A0101at 115.787 kb on + strand, within Rru_A0101at 115.788 kb on - strand, within Rru_A0101at 115.788 kb on - strand, within Rru_A0101at 115.788 kb on - strand, within Rru_A0101at 115.788 kb on - strand, within Rru_A0101at 115.788 kb on - strand, within Rru_A0101at 115.788 kb on - strand, within Rru_A0101at 115.868 kb on + strand, within Rru_A0101at 115.868 kb on + strand, within Rru_A0101at 115.869 kb on - strand, within Rru_A0101at 115.869 kb on - strand, within Rru_A0101at 115.869 kb on - strand, within Rru_A0101at 115.869 kb on - strand, within Rru_A0101

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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112,110 + Rru_A0098 0.31 +0.3
112,110 + Rru_A0098 0.31 +0.0
112,110 + Rru_A0098 0.31 +0.0
112,111 - Rru_A0098 0.31 +1.2
112,309 - Rru_A0098 0.47 +1.2
112,309 - Rru_A0098 0.47 +0.0
112,573 + Rru_A0098 0.69 +0.0
112,603 - Rru_A0098 0.71 +0.6
112,765 + Rru_A0098 0.85 +0.7
112,767 + Rru_A0098 0.85 +0.0
113,085 + +1.2
113,180 + -1.0
113,181 - +0.0
113,225 + +0.2
113,226 - +0.0
113,226 - +0.0
113,226 - -0.4
113,287 - Rru_A0099 0.13 +0.4
113,287 - Rru_A0099 0.13 +0.0
113,424 - Rru_A0099 0.20 -0.6
113,424 - Rru_A0099 0.20 -0.6
113,472 + Rru_A0099 0.22 +0.4
113,472 + Rru_A0099 0.22 +0.6
113,473 - Rru_A0099 0.22 -0.1
113,473 - Rru_A0099 0.22 -0.5
113,473 - Rru_A0099 0.22 +0.0
113,473 - Rru_A0099 0.22 +0.6
113,651 + Rru_A0099 0.31 +0.0
113,651 + Rru_A0099 0.31 +0.0
113,651 + Rru_A0099 0.31 +0.5
113,652 - Rru_A0099 0.31 -1.0
113,652 - Rru_A0099 0.31 -0.2
113,652 - Rru_A0099 0.31 +0.1
113,652 - Rru_A0099 0.31 +0.0
113,655 - Rru_A0099 0.31 +1.3
113,655 - Rru_A0099 0.31 +0.5
113,655 - Rru_A0099 0.31 +0.2
113,931 + Rru_A0099 0.45 +0.0
114,112 + Rru_A0099 0.54 +0.8
114,113 - Rru_A0099 0.54 +0.0
114,307 + Rru_A0099 0.64 +2.3
114,308 - Rru_A0099 0.64 +0.0
114,460 + Rru_A0099 0.72 +0.0
114,460 + Rru_A0099 0.72 +0.5
114,460 + Rru_A0099 0.72 +0.4
114,460 + Rru_A0099 0.72 +0.3
114,460 + Rru_A0099 0.72 +0.5
114,460 + Rru_A0099 0.72 +0.0
114,461 - Rru_A0099 0.72 +0.8
114,461 - Rru_A0099 0.72 +0.0
114,461 - Rru_A0099 0.72 -0.1
114,461 - Rru_A0099 0.72 +0.1
114,602 + Rru_A0099 0.79 +0.0
114,602 + Rru_A0099 0.79 +0.5
114,602 + Rru_A0099 0.79 +0.8
114,602 + Rru_A0099 0.79 +0.1
114,602 + Rru_A0099 0.79 +0.2
114,603 - Rru_A0099 0.79 +0.0
114,603 - Rru_A0099 0.79 +0.0
114,603 - Rru_A0099 0.79 +0.0
114,603 - Rru_A0099 0.79 +0.0
114,603 - Rru_A0099 0.79 +1.3
114,603 - Rru_A0099 0.79 +0.1
114,603 - Rru_A0099 0.79 -1.6
114,603 - Rru_A0099 0.79 -0.2
114,603 - Rru_A0099 0.79 +0.0
114,749 + Rru_A0099 0.86 -1.0
114,749 + Rru_A0099 0.86 -1.0
114,749 + Rru_A0099 0.86 -1.0
114,749 + Rru_A0099 0.86 -0.7
114,798 - Rru_A0099 0.89 +0.6
114,798 - Rru_A0099 0.89 +0.7
114,831 + -1.0
114,831 + +0.0
114,890 + +0.0
114,953 + +0.0
114,953 + +0.2
114,953 + +0.0
114,953 + +0.6
114,953 + +0.0
114,953 + +0.0
114,953 + -0.1
114,953 + +0.0
114,953 + +0.9
114,954 - +1.5
114,954 - +0.0
114,954 - +0.0
114,954 - -1.0
115,280 - Rru_A0100 0.71 +0.8
115,347 + +1.0
115,347 + +1.1
115,347 + +1.2
115,347 + +0.0
115,347 + +1.0
115,347 + +0.4
115,347 + +0.0
115,347 + +1.0
115,347 + +0.2
115,347 + +0.8
115,347 + +0.2
115,348 - +0.0
115,348 - -0.4
115,348 - -0.3
115,348 - -0.3
115,471 + +0.0
115,471 + +0.6
115,472 - -1.6
115,472 - +0.0
115,472 - +0.0
115,518 + Rru_A0101 0.14 -0.2
115,519 - Rru_A0101 0.14 +0.0
115,520 + Rru_A0101 0.14 +0.3
115,521 - Rru_A0101 0.14 +0.0
115,538 - Rru_A0101 0.17 +0.0
115,595 + Rru_A0101 0.27 +0.0
115,595 + Rru_A0101 0.27 +0.0
115,596 - Rru_A0101 0.28 +0.0
115,596 - Rru_A0101 0.28 +0.0
115,635 - Rru_A0101 0.34 -1.0
115,785 + Rru_A0101 0.61 +0.9
115,787 + Rru_A0101 0.61 +0.4
115,787 + Rru_A0101 0.61 +0.2
115,787 + Rru_A0101 0.61 +0.6
115,787 + Rru_A0101 0.61 +1.0
115,787 + Rru_A0101 0.61 +0.0
115,787 + Rru_A0101 0.61 +0.0
115,788 - Rru_A0101 0.61 +0.0
115,788 - Rru_A0101 0.61 +0.7
115,788 - Rru_A0101 0.61 -2.0
115,788 - Rru_A0101 0.61 +0.0
115,788 - Rru_A0101 0.61 -1.2
115,788 - Rru_A0101 0.61 +0.0
115,868 + Rru_A0101 0.75 -1.6
115,868 + Rru_A0101 0.75 -1.1
115,869 - Rru_A0101 0.75 +0.0
115,869 - Rru_A0101 0.75 +1.2
115,869 - Rru_A0101 0.75 +0.0
115,869 - Rru_A0101 0.75 +0.0

Or see this region's nucleotide sequence