Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0087 and Rru_A0088 are separated by 178 nucleotides Rru_A0088 and Rru_A0089 are separated by 120 nucleotides
Rru_A0087: Rru_A0087 - HI0933-like protein (NCBI), at 100,089 to 101,330
_A0087
Rru_A0088: Rru_A0088 - Zinc-containing alcohol dehydrogenase superfamily (NCBI), at 101,509 to 102,531
_A0088
Rru_A0089: Rru_A0089 - ATP-dependent DNA helicase RecQ (NCBI), at 102,652 to 104,541
_A0089
Position (kb) 101
102
103 Strain fitness (log2 ratio) -1
0
1 at 100.833 kb on + strand, within Rru_A0087 at 100.833 kb on + strand, within Rru_A0087 at 100.833 kb on + strand, within Rru_A0087 at 100.833 kb on + strand, within Rru_A0087 at 100.834 kb on - strand, within Rru_A0087 at 100.834 kb on - strand, within Rru_A0087 at 100.834 kb on - strand, within Rru_A0087 at 100.834 kb on - strand, within Rru_A0087 at 100.834 kb on - strand, within Rru_A0087 at 100.834 kb on - strand, within Rru_A0087 at 100.834 kb on - strand, within Rru_A0087 at 100.834 kb on - strand, within Rru_A0087 at 100.834 kb on - strand, within Rru_A0087 at 101.241 kb on + strand at 101.242 kb on - strand at 101.375 kb on - strand at 101.405 kb on - strand at 101.647 kb on - strand, within Rru_A0088 at 101.647 kb on - strand, within Rru_A0088 at 101.770 kb on + strand, within Rru_A0088 at 101.770 kb on + strand, within Rru_A0088 at 101.771 kb on - strand, within Rru_A0088 at 101.771 kb on - strand, within Rru_A0088 at 102.291 kb on + strand, within Rru_A0088 at 102.291 kb on + strand, within Rru_A0088 at 102.292 kb on - strand, within Rru_A0088 at 102.292 kb on - strand, within Rru_A0088 at 102.328 kb on + strand, within Rru_A0088 at 102.328 kb on + strand, within Rru_A0088 at 102.328 kb on + strand, within Rru_A0088 at 102.329 kb on - strand, within Rru_A0088 at 102.329 kb on - strand, within Rru_A0088 at 102.329 kb on - strand, within Rru_A0088 at 102.329 kb on - strand, within Rru_A0088 at 102.529 kb on + strand at 102.529 kb on + strand at 102.599 kb on + strand at 102.600 kb on - strand at 102.763 kb on - strand at 102.763 kb on - strand at 102.763 kb on - strand at 103.063 kb on + strand, within Rru_A0089 at 103.063 kb on + strand, within Rru_A0089 at 103.064 kb on - strand, within Rru_A0089 at 103.064 kb on - strand, within Rru_A0089 at 103.189 kb on + strand, within Rru_A0089 at 103.189 kb on + strand, within Rru_A0089 at 103.189 kb on + strand, within Rru_A0089 at 103.189 kb on + strand, within Rru_A0089 at 103.189 kb on + strand, within Rru_A0089 at 103.190 kb on - strand, within Rru_A0089 at 103.279 kb on - strand, within Rru_A0089 at 103.407 kb on + strand, within Rru_A0089 at 103.429 kb on + strand, within Rru_A0089 at 103.430 kb on - strand, within Rru_A0089
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 100,833 + Rru_A0087 0.60 +0.0 100,833 + Rru_A0087 0.60 +0.0 100,833 + Rru_A0087 0.60 -1.6 100,833 + Rru_A0087 0.60 +0.7 100,834 - Rru_A0087 0.60 +0.5 100,834 - Rru_A0087 0.60 +0.4 100,834 - Rru_A0087 0.60 +0.2 100,834 - Rru_A0087 0.60 +0.0 100,834 - Rru_A0087 0.60 -1.0 100,834 - Rru_A0087 0.60 +0.7 100,834 - Rru_A0087 0.60 +0.0 100,834 - Rru_A0087 0.60 +0.0 100,834 - Rru_A0087 0.60 +0.0 101,241 + +0.9 101,242 - +0.5 101,375 - +0.0 101,405 - +0.9 101,647 - Rru_A0088 0.13 +0.0 101,647 - Rru_A0088 0.13 -1.1 101,770 + Rru_A0088 0.26 +1.0 101,770 + Rru_A0088 0.26 -1.0 101,771 - Rru_A0088 0.26 +0.0 101,771 - Rru_A0088 0.26 -0.7 102,291 + Rru_A0088 0.76 +1.2 102,291 + Rru_A0088 0.76 +0.0 102,292 - Rru_A0088 0.77 +0.0 102,292 - Rru_A0088 0.77 -0.2 102,328 + Rru_A0088 0.80 -0.2 102,328 + Rru_A0088 0.80 +0.4 102,328 + Rru_A0088 0.80 -1.4 102,329 - Rru_A0088 0.80 +0.0 102,329 - Rru_A0088 0.80 +0.0 102,329 - Rru_A0088 0.80 +0.0 102,329 - Rru_A0088 0.80 -1.6 102,529 + +0.0 102,529 + +0.0 102,599 + -1.0 102,600 - +0.6 102,763 - +0.0 102,763 - +0.0 102,763 - +0.0 103,063 + Rru_A0089 0.22 +0.0 103,063 + Rru_A0089 0.22 -0.5 103,064 - Rru_A0089 0.22 +0.0 103,064 - Rru_A0089 0.22 +0.0 103,189 + Rru_A0089 0.28 +0.0 103,189 + Rru_A0089 0.28 +1.2 103,189 + Rru_A0089 0.28 +0.7 103,189 + Rru_A0089 0.28 +0.0 103,189 + Rru_A0089 0.28 +0.6 103,190 - Rru_A0089 0.28 +0.0 103,279 - Rru_A0089 0.33 +1.6 103,407 + Rru_A0089 0.40 +0.0 103,429 + Rru_A0089 0.41 +0.0 103,430 - Rru_A0089 0.41 +0.0
Or see this region's nucleotide sequence