Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0053

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0052 and Rru_A0053 are separated by 53 nucleotidesRru_A0053 and Rru_A0054 are separated by 637 nucleotides Rru_A0052: Rru_A0052 - Biotin carboxylase (NCBI), at 53,905 to 55,893 _A0052 Rru_A0053: Rru_A0053 - Carboxyl transferase (NCBI), at 55,947 to 57,479 _A0053 Rru_A0054: Rru_A0054 - Deoxyxylulose-5-phosphate synthase (NCBI), at 58,117 to 60,054 _A0054 Position (kb) 55 56 57 58Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 55.094 kb on + strand, within Rru_A0052at 55.094 kb on + strand, within Rru_A0052at 55.094 kb on + strand, within Rru_A0052at 55.095 kb on - strand, within Rru_A0052at 55.095 kb on - strand, within Rru_A0052at 55.229 kb on + strand, within Rru_A0052at 55.229 kb on + strand, within Rru_A0052at 55.229 kb on + strand, within Rru_A0052at 55.229 kb on + strand, within Rru_A0052at 55.230 kb on - strand, within Rru_A0052at 55.230 kb on - strand, within Rru_A0052at 55.230 kb on - strand, within Rru_A0052at 55.230 kb on - strand, within Rru_A0052at 55.235 kb on + strand, within Rru_A0052at 55.235 kb on + strand, within Rru_A0052at 55.235 kb on + strand, within Rru_A0052at 55.235 kb on + strand, within Rru_A0052at 55.235 kb on + strand, within Rru_A0052at 55.236 kb on - strand, within Rru_A0052at 55.236 kb on - strand, within Rru_A0052at 55.236 kb on - strand, within Rru_A0052at 55.491 kb on + strand, within Rru_A0052at 55.492 kb on - strand, within Rru_A0052at 55.493 kb on + strand, within Rru_A0052at 55.493 kb on + strand, within Rru_A0052at 55.493 kb on + strand, within Rru_A0052at 55.494 kb on - strand, within Rru_A0052at 55.494 kb on - strand, within Rru_A0052at 55.494 kb on - strand, within Rru_A0052at 55.494 kb on - strand, within Rru_A0052at 55.494 kb on - strand, within Rru_A0052at 55.494 kb on - strand, within Rru_A0052at 55.649 kb on + strand, within Rru_A0052at 55.715 kb on + strandat 55.716 kb on - strandat 55.884 kb on + strandat 56.221 kb on + strand, within Rru_A0053at 56.221 kb on + strand, within Rru_A0053at 56.221 kb on + strand, within Rru_A0053at 56.221 kb on + strand, within Rru_A0053at 56.222 kb on - strand, within Rru_A0053at 56.222 kb on - strand, within Rru_A0053at 56.222 kb on - strand, within Rru_A0053at 56.275 kb on + strand, within Rru_A0053at 56.276 kb on - strand, within Rru_A0053at 56.329 kb on + strand, within Rru_A0053at 56.561 kb on + strand, within Rru_A0053at 56.561 kb on + strand, within Rru_A0053at 56.562 kb on - strand, within Rru_A0053at 56.573 kb on - strand, within Rru_A0053at 56.638 kb on + strand, within Rru_A0053at 56.638 kb on + strand, within Rru_A0053at 56.638 kb on + strand, within Rru_A0053at 56.639 kb on - strand, within Rru_A0053at 56.687 kb on - strand, within Rru_A0053at 56.829 kb on - strand, within Rru_A0053at 56.912 kb on + strand, within Rru_A0053at 56.912 kb on + strand, within Rru_A0053at 56.913 kb on - strand, within Rru_A0053at 56.913 kb on - strand, within Rru_A0053at 56.913 kb on - strand, within Rru_A0053at 56.913 kb on - strand, within Rru_A0053at 56.913 kb on - strand, within Rru_A0053at 56.913 kb on - strand, within Rru_A0053at 56.913 kb on - strand, within Rru_A0053at 56.913 kb on - strand, within Rru_A0053at 56.914 kb on + strand, within Rru_A0053at 56.914 kb on + strand, within Rru_A0053at 56.914 kb on + strand, within Rru_A0053at 56.915 kb on - strand, within Rru_A0053at 56.915 kb on - strand, within Rru_A0053at 56.915 kb on - strand, within Rru_A0053at 56.962 kb on + strand, within Rru_A0053at 56.962 kb on + strand, within Rru_A0053at 56.962 kb on + strand, within Rru_A0053at 56.963 kb on - strand, within Rru_A0053at 57.053 kb on - strand, within Rru_A0053at 57.395 kb on + strandat 57.395 kb on + strandat 57.395 kb on + strandat 57.395 kb on + strandat 57.396 kb on - strandat 57.396 kb on - strandat 57.396 kb on - strandat 57.479 kb on + strandat 57.479 kb on + strandat 57.480 kb on - strandat 57.494 kb on - strandat 57.494 kb on - strandat 57.821 kb on + strandat 57.821 kb on + strandat 57.821 kb on + strandat 57.822 kb on - strandat 57.823 kb on + strandat 57.823 kb on + strandat 57.823 kb on + strandat 57.824 kb on - strandat 57.824 kb on - strandat 57.827 kb on + strandat 57.896 kb on - strandat 57.896 kb on - strandat 57.896 kb on - strandat 57.896 kb on - strandat 57.896 kb on - strandat 57.939 kb on - strandat 58.003 kb on + strandat 58.008 kb on + strandat 58.009 kb on - strandat 58.009 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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55,094 + Rru_A0052 0.60 +0.9
55,094 + Rru_A0052 0.60 +2.0
55,094 + Rru_A0052 0.60 +1.9
55,095 - Rru_A0052 0.60 +2.4
55,095 - Rru_A0052 0.60 +1.1
55,229 + Rru_A0052 0.67 +0.0
55,229 + Rru_A0052 0.67 +2.4
55,229 + Rru_A0052 0.67 +1.2
55,229 + Rru_A0052 0.67 +1.3
55,230 - Rru_A0052 0.67 +1.2
55,230 - Rru_A0052 0.67 +1.9
55,230 - Rru_A0052 0.67 +2.2
55,230 - Rru_A0052 0.67 +0.0
55,235 + Rru_A0052 0.67 +2.6
55,235 + Rru_A0052 0.67 +2.2
55,235 + Rru_A0052 0.67 +1.7
55,235 + Rru_A0052 0.67 -1.0
55,235 + Rru_A0052 0.67 +0.0
55,236 - Rru_A0052 0.67 +0.0
55,236 - Rru_A0052 0.67 +0.0
55,236 - Rru_A0052 0.67 +0.0
55,491 + Rru_A0052 0.80 +2.1
55,492 - Rru_A0052 0.80 +0.9
55,493 + Rru_A0052 0.80 -1.0
55,493 + Rru_A0052 0.80 +2.0
55,493 + Rru_A0052 0.80 +1.4
55,494 - Rru_A0052 0.80 +0.0
55,494 - Rru_A0052 0.80 -1.0
55,494 - Rru_A0052 0.80 +0.0
55,494 - Rru_A0052 0.80 +1.8
55,494 - Rru_A0052 0.80 +1.7
55,494 - Rru_A0052 0.80 -2.0
55,649 + Rru_A0052 0.88 +2.0
55,715 + +0.8
55,716 - +1.4
55,884 + +1.4
56,221 + Rru_A0053 0.18 +0.0
56,221 + Rru_A0053 0.18 +0.0
56,221 + Rru_A0053 0.18 +2.3
56,221 + Rru_A0053 0.18 +2.6
56,222 - Rru_A0053 0.18 +2.1
56,222 - Rru_A0053 0.18 +0.0
56,222 - Rru_A0053 0.18 +1.9
56,275 + Rru_A0053 0.21 +1.6
56,276 - Rru_A0053 0.21 +0.0
56,329 + Rru_A0053 0.25 +0.0
56,561 + Rru_A0053 0.40 +0.0
56,561 + Rru_A0053 0.40 +1.4
56,562 - Rru_A0053 0.40 +2.0
56,573 - Rru_A0053 0.41 -1.0
56,638 + Rru_A0053 0.45 +1.5
56,638 + Rru_A0053 0.45 -1.0
56,638 + Rru_A0053 0.45 +2.0
56,639 - Rru_A0053 0.45 +0.0
56,687 - Rru_A0053 0.48 +3.5
56,829 - Rru_A0053 0.58 +1.6
56,912 + Rru_A0053 0.63 +1.6
56,912 + Rru_A0053 0.63 +1.1
56,913 - Rru_A0053 0.63 +1.5
56,913 - Rru_A0053 0.63 +1.0
56,913 - Rru_A0053 0.63 +1.2
56,913 - Rru_A0053 0.63 +1.2
56,913 - Rru_A0053 0.63 +1.7
56,913 - Rru_A0053 0.63 +1.5
56,913 - Rru_A0053 0.63 +0.0
56,913 - Rru_A0053 0.63 +0.0
56,914 + Rru_A0053 0.63 +0.0
56,914 + Rru_A0053 0.63 +0.0
56,914 + Rru_A0053 0.63 +2.6
56,915 - Rru_A0053 0.63 +0.0
56,915 - Rru_A0053 0.63 +1.5
56,915 - Rru_A0053 0.63 +0.0
56,962 + Rru_A0053 0.66 +0.0
56,962 + Rru_A0053 0.66 +1.3
56,962 + Rru_A0053 0.66 +0.0
56,963 - Rru_A0053 0.66 -1.0
57,053 - Rru_A0053 0.72 +1.2
57,395 + +1.7
57,395 + +0.0
57,395 + +1.7
57,395 + +0.0
57,396 - +2.1
57,396 - +0.0
57,396 - +1.8
57,479 + +1.7
57,479 + +2.0
57,480 - +0.0
57,494 - -1.7
57,494 - +0.0
57,821 + +1.6
57,821 + +0.0
57,821 + +0.7
57,822 - -2.0
57,823 + +0.0
57,823 + +0.0
57,823 + +1.0
57,824 - -2.0
57,824 - -1.0
57,827 + -0.4
57,896 - +0.0
57,896 - -2.3
57,896 - +0.0
57,896 - -3.2
57,896 - +0.0
57,939 - +0.0
58,003 + +1.0
58,008 + +0.0
58,009 - -2.6
58,009 - -2.3

Or see this region's nucleotide sequence