Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0052

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0051 and Rru_A0052 are separated by 305 nucleotidesRru_A0052 and Rru_A0053 are separated by 53 nucleotides Rru_A0051: Rru_A0051 - Carboxyl transferase (NCBI), at 52,046 to 53,599 _A0051 Rru_A0052: Rru_A0052 - Biotin carboxylase (NCBI), at 53,905 to 55,893 _A0052 Rru_A0053: Rru_A0053 - Carboxyl transferase (NCBI), at 55,947 to 57,479 _A0053 Position (kb) 53 54 55 56Strain fitness (log2 ratio) -2 -1 0 1 2 3at 52.921 kb on + strand, within Rru_A0051at 53.055 kb on + strand, within Rru_A0051at 53.073 kb on + strand, within Rru_A0051at 53.163 kb on + strand, within Rru_A0051at 53.163 kb on + strand, within Rru_A0051at 53.419 kb on + strand, within Rru_A0051at 53.420 kb on - strand, within Rru_A0051at 53.420 kb on - strand, within Rru_A0051at 53.463 kb on + strandat 53.709 kb on + strandat 53.709 kb on + strandat 53.710 kb on - strandat 53.710 kb on - strandat 53.906 kb on + strandat 53.907 kb on - strandat 53.907 kb on - strandat 54.114 kb on - strand, within Rru_A0052at 54.124 kb on - strand, within Rru_A0052at 54.124 kb on - strand, within Rru_A0052at 54.158 kb on + strand, within Rru_A0052at 54.158 kb on + strand, within Rru_A0052at 54.158 kb on + strand, within Rru_A0052at 54.158 kb on + strand, within Rru_A0052at 54.158 kb on + strand, within Rru_A0052at 54.312 kb on - strand, within Rru_A0052at 54.453 kb on + strand, within Rru_A0052at 54.453 kb on + strand, within Rru_A0052at 54.453 kb on + strand, within Rru_A0052at 54.453 kb on + strand, within Rru_A0052at 54.454 kb on - strand, within Rru_A0052at 54.557 kb on + strand, within Rru_A0052at 54.558 kb on - strand, within Rru_A0052at 54.639 kb on + strand, within Rru_A0052at 54.639 kb on + strand, within Rru_A0052at 54.746 kb on + strand, within Rru_A0052at 54.746 kb on + strand, within Rru_A0052at 54.747 kb on - strand, within Rru_A0052at 54.747 kb on - strand, within Rru_A0052at 54.749 kb on + strand, within Rru_A0052at 54.749 kb on + strand, within Rru_A0052at 54.749 kb on + strand, within Rru_A0052at 54.749 kb on + strand, within Rru_A0052at 54.749 kb on + strand, within Rru_A0052at 54.749 kb on + strand, within Rru_A0052at 54.750 kb on - strand, within Rru_A0052at 54.784 kb on - strand, within Rru_A0052at 54.825 kb on - strand, within Rru_A0052at 54.825 kb on - strand, within Rru_A0052at 54.878 kb on + strand, within Rru_A0052at 54.878 kb on + strand, within Rru_A0052at 54.878 kb on + strand, within Rru_A0052at 54.879 kb on - strand, within Rru_A0052at 54.879 kb on - strand, within Rru_A0052at 55.094 kb on + strand, within Rru_A0052at 55.094 kb on + strand, within Rru_A0052at 55.094 kb on + strand, within Rru_A0052at 55.095 kb on - strand, within Rru_A0052at 55.095 kb on - strand, within Rru_A0052at 55.229 kb on + strand, within Rru_A0052at 55.229 kb on + strand, within Rru_A0052at 55.229 kb on + strand, within Rru_A0052at 55.229 kb on + strand, within Rru_A0052at 55.230 kb on - strand, within Rru_A0052at 55.230 kb on - strand, within Rru_A0052at 55.230 kb on - strand, within Rru_A0052at 55.230 kb on - strand, within Rru_A0052at 55.235 kb on + strand, within Rru_A0052at 55.235 kb on + strand, within Rru_A0052at 55.235 kb on + strand, within Rru_A0052at 55.235 kb on + strand, within Rru_A0052at 55.235 kb on + strand, within Rru_A0052at 55.236 kb on - strand, within Rru_A0052at 55.236 kb on - strand, within Rru_A0052at 55.236 kb on - strand, within Rru_A0052at 55.491 kb on + strand, within Rru_A0052at 55.492 kb on - strand, within Rru_A0052at 55.493 kb on + strand, within Rru_A0052at 55.493 kb on + strand, within Rru_A0052at 55.493 kb on + strand, within Rru_A0052at 55.494 kb on - strand, within Rru_A0052at 55.494 kb on - strand, within Rru_A0052at 55.494 kb on - strand, within Rru_A0052at 55.494 kb on - strand, within Rru_A0052at 55.494 kb on - strand, within Rru_A0052at 55.494 kb on - strand, within Rru_A0052at 55.649 kb on + strand, within Rru_A0052at 55.715 kb on + strandat 55.716 kb on - strandat 55.884 kb on + strandat 56.221 kb on + strand, within Rru_A0053at 56.221 kb on + strand, within Rru_A0053at 56.221 kb on + strand, within Rru_A0053at 56.221 kb on + strand, within Rru_A0053at 56.222 kb on - strand, within Rru_A0053at 56.222 kb on - strand, within Rru_A0053at 56.222 kb on - strand, within Rru_A0053at 56.275 kb on + strand, within Rru_A0053at 56.276 kb on - strand, within Rru_A0053at 56.329 kb on + strand, within Rru_A0053at 56.561 kb on + strand, within Rru_A0053at 56.561 kb on + strand, within Rru_A0053at 56.562 kb on - strand, within Rru_A0053at 56.573 kb on - strand, within Rru_A0053at 56.638 kb on + strand, within Rru_A0053at 56.638 kb on + strand, within Rru_A0053at 56.638 kb on + strand, within Rru_A0053at 56.639 kb on - strand, within Rru_A0053at 56.687 kb on - strand, within Rru_A0053at 56.829 kb on - strand, within Rru_A0053

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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52,921 + Rru_A0051 0.56 +0.3
53,055 + Rru_A0051 0.65 +0.0
53,073 + Rru_A0051 0.66 +0.2
53,163 + Rru_A0051 0.72 +1.0
53,163 + Rru_A0051 0.72 +0.0
53,419 + Rru_A0051 0.88 -1.6
53,420 - Rru_A0051 0.88 +0.7
53,420 - Rru_A0051 0.88 -1.0
53,463 + +0.0
53,709 + +0.1
53,709 + +1.1
53,710 - +0.3
53,710 - +0.2
53,906 + +2.2
53,907 - +0.0
53,907 - +2.9
54,114 - Rru_A0052 0.11 +1.5
54,124 - Rru_A0052 0.11 +1.4
54,124 - Rru_A0052 0.11 +0.0
54,158 + Rru_A0052 0.13 +0.0
54,158 + Rru_A0052 0.13 +0.0
54,158 + Rru_A0052 0.13 +1.8
54,158 + Rru_A0052 0.13 +0.0
54,158 + Rru_A0052 0.13 +1.8
54,312 - Rru_A0052 0.20 +2.3
54,453 + Rru_A0052 0.28 +2.1
54,453 + Rru_A0052 0.28 +0.0
54,453 + Rru_A0052 0.28 +1.2
54,453 + Rru_A0052 0.28 +0.7
54,454 - Rru_A0052 0.28 +3.3
54,557 + Rru_A0052 0.33 +0.0
54,558 - Rru_A0052 0.33 +1.6
54,639 + Rru_A0052 0.37 +0.0
54,639 + Rru_A0052 0.37 -1.0
54,746 + Rru_A0052 0.42 +1.5
54,746 + Rru_A0052 0.42 +1.9
54,747 - Rru_A0052 0.42 +2.0
54,747 - Rru_A0052 0.42 +1.8
54,749 + Rru_A0052 0.42 +0.0
54,749 + Rru_A0052 0.42 +0.0
54,749 + Rru_A0052 0.42 +0.0
54,749 + Rru_A0052 0.42 +0.0
54,749 + Rru_A0052 0.42 +1.9
54,749 + Rru_A0052 0.42 +1.7
54,750 - Rru_A0052 0.42 +1.6
54,784 - Rru_A0052 0.44 +0.0
54,825 - Rru_A0052 0.46 +0.0
54,825 - Rru_A0052 0.46 +0.0
54,878 + Rru_A0052 0.49 +3.2
54,878 + Rru_A0052 0.49 -2.3
54,878 + Rru_A0052 0.49 +0.0
54,879 - Rru_A0052 0.49 +2.0
54,879 - Rru_A0052 0.49 +1.0
55,094 + Rru_A0052 0.60 +0.9
55,094 + Rru_A0052 0.60 +2.0
55,094 + Rru_A0052 0.60 +1.9
55,095 - Rru_A0052 0.60 +2.4
55,095 - Rru_A0052 0.60 +1.1
55,229 + Rru_A0052 0.67 +0.0
55,229 + Rru_A0052 0.67 +2.4
55,229 + Rru_A0052 0.67 +1.2
55,229 + Rru_A0052 0.67 +1.3
55,230 - Rru_A0052 0.67 +1.2
55,230 - Rru_A0052 0.67 +1.9
55,230 - Rru_A0052 0.67 +2.2
55,230 - Rru_A0052 0.67 +0.0
55,235 + Rru_A0052 0.67 +2.6
55,235 + Rru_A0052 0.67 +2.2
55,235 + Rru_A0052 0.67 +1.7
55,235 + Rru_A0052 0.67 -1.0
55,235 + Rru_A0052 0.67 +0.0
55,236 - Rru_A0052 0.67 +0.0
55,236 - Rru_A0052 0.67 +0.0
55,236 - Rru_A0052 0.67 +0.0
55,491 + Rru_A0052 0.80 +2.1
55,492 - Rru_A0052 0.80 +0.9
55,493 + Rru_A0052 0.80 -1.0
55,493 + Rru_A0052 0.80 +2.0
55,493 + Rru_A0052 0.80 +1.4
55,494 - Rru_A0052 0.80 +0.0
55,494 - Rru_A0052 0.80 -1.0
55,494 - Rru_A0052 0.80 +0.0
55,494 - Rru_A0052 0.80 +1.8
55,494 - Rru_A0052 0.80 +1.7
55,494 - Rru_A0052 0.80 -2.0
55,649 + Rru_A0052 0.88 +2.0
55,715 + +0.8
55,716 - +1.4
55,884 + +1.4
56,221 + Rru_A0053 0.18 +0.0
56,221 + Rru_A0053 0.18 +0.0
56,221 + Rru_A0053 0.18 +2.3
56,221 + Rru_A0053 0.18 +2.6
56,222 - Rru_A0053 0.18 +2.1
56,222 - Rru_A0053 0.18 +0.0
56,222 - Rru_A0053 0.18 +1.9
56,275 + Rru_A0053 0.21 +1.6
56,276 - Rru_A0053 0.21 +0.0
56,329 + Rru_A0053 0.25 +0.0
56,561 + Rru_A0053 0.40 +0.0
56,561 + Rru_A0053 0.40 +1.4
56,562 - Rru_A0053 0.40 +2.0
56,573 - Rru_A0053 0.41 -1.0
56,638 + Rru_A0053 0.45 +1.5
56,638 + Rru_A0053 0.45 -1.0
56,638 + Rru_A0053 0.45 +2.0
56,639 - Rru_A0053 0.45 +0.0
56,687 - Rru_A0053 0.48 +3.5
56,829 - Rru_A0053 0.58 +1.6

Or see this region's nucleotide sequence