Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0047

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0045 and Rru_A0046 are separated by 13 nucleotidesRru_A0046 and Rru_A0047 are separated by 86 nucleotidesRru_A0047 and Rru_A0048 are separated by 142 nucleotidesRru_A0048 and Rru_A0049 are separated by 78 nucleotides Rru_A0045: Rru_A0045 - Beta-ketoacyl synthase (NCBI), at 46,946 to 48,160 _A0045 Rru_A0046: Rru_A0046 - Protein of unknown function DUF523 (NCBI), at 48,174 to 48,683 _A0046 Rru_A0047: Rru_A0047 - ABC transporter component (NCBI), at 48,770 to 50,377 _A0047 Rru_A0048: Rru_A0048 - Lysine exporter protein (LYSE/YGGA) (NCBI), at 50,520 to 51,146 _A0048 Rru_A0049: Rru_A0049 - Biotin/lipoyl attachment (NCBI), at 51,225 to 51,629 _A0049 Position (kb) 48 49 50 51Strain fitness (log2 ratio) -1 0 1 2 3at 48.241 kb on - strand, within Rru_A0046at 48.242 kb on + strand, within Rru_A0046at 48.243 kb on - strand, within Rru_A0046at 48.447 kb on + strand, within Rru_A0046at 48.447 kb on + strand, within Rru_A0046at 48.447 kb on + strand, within Rru_A0046at 48.448 kb on - strand, within Rru_A0046at 48.448 kb on - strand, within Rru_A0046at 48.549 kb on + strand, within Rru_A0046at 48.549 kb on + strand, within Rru_A0046at 48.549 kb on + strand, within Rru_A0046at 48.550 kb on - strand, within Rru_A0046at 48.550 kb on - strand, within Rru_A0046at 48.681 kb on + strandat 48.747 kb on + strandat 48.748 kb on - strandat 48.880 kb on - strandat 48.949 kb on + strand, within Rru_A0047at 48.949 kb on + strand, within Rru_A0047at 48.949 kb on + strand, within Rru_A0047at 48.950 kb on - strand, within Rru_A0047at 48.950 kb on - strand, within Rru_A0047at 48.950 kb on - strand, within Rru_A0047at 48.950 kb on - strand, within Rru_A0047at 48.950 kb on - strand, within Rru_A0047at 49.123 kb on + strand, within Rru_A0047at 49.124 kb on - strand, within Rru_A0047at 49.188 kb on + strand, within Rru_A0047at 49.188 kb on + strand, within Rru_A0047at 49.188 kb on + strand, within Rru_A0047at 49.188 kb on + strand, within Rru_A0047at 49.188 kb on + strand, within Rru_A0047at 49.188 kb on + strand, within Rru_A0047at 49.188 kb on + strand, within Rru_A0047at 49.188 kb on + strand, within Rru_A0047at 49.188 kb on + strand, within Rru_A0047at 49.189 kb on - strand, within Rru_A0047at 49.189 kb on - strand, within Rru_A0047at 49.305 kb on - strand, within Rru_A0047at 49.342 kb on - strand, within Rru_A0047at 49.352 kb on + strand, within Rru_A0047at 49.406 kb on - strand, within Rru_A0047at 49.428 kb on - strand, within Rru_A0047at 49.428 kb on - strand, within Rru_A0047at 49.722 kb on + strand, within Rru_A0047at 49.723 kb on - strand, within Rru_A0047at 49.734 kb on + strand, within Rru_A0047at 49.734 kb on + strand, within Rru_A0047at 49.837 kb on + strand, within Rru_A0047at 49.837 kb on + strand, within Rru_A0047at 49.837 kb on + strand, within Rru_A0047at 49.838 kb on - strand, within Rru_A0047at 49.838 kb on - strand, within Rru_A0047at 49.838 kb on - strand, within Rru_A0047at 49.838 kb on - strand, within Rru_A0047at 49.876 kb on + strand, within Rru_A0047at 49.876 kb on + strand, within Rru_A0047at 49.877 kb on - strand, within Rru_A0047at 49.877 kb on - strand, within Rru_A0047at 49.877 kb on - strand, within Rru_A0047at 49.877 kb on - strand, within Rru_A0047at 50.300 kb on - strandat 50.478 kb on - strandat 50.478 kb on - strandat 50.521 kb on + strandat 50.522 kb on - strandat 50.522 kb on - strandat 50.522 kb on - strandat 50.614 kb on + strand, within Rru_A0048at 50.615 kb on - strand, within Rru_A0048at 50.615 kb on - strand, within Rru_A0048at 50.654 kb on - strand, within Rru_A0048at 50.964 kb on + strand, within Rru_A0048at 50.965 kb on - strand, within Rru_A0048at 50.965 kb on - strand, within Rru_A0048at 51.077 kb on + strand, within Rru_A0048at 51.077 kb on + strand, within Rru_A0048at 51.077 kb on + strand, within Rru_A0048at 51.077 kb on + strand, within Rru_A0048at 51.077 kb on + strand, within Rru_A0048at 51.077 kb on + strand, within Rru_A0048at 51.078 kb on - strand, within Rru_A0048at 51.078 kb on - strand, within Rru_A0048

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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48,241 - Rru_A0046 0.13 -0.5
48,242 + Rru_A0046 0.13 -1.2
48,243 - Rru_A0046 0.14 +0.0
48,447 + Rru_A0046 0.54 +2.0
48,447 + Rru_A0046 0.54 -1.6
48,447 + Rru_A0046 0.54 -0.1
48,448 - Rru_A0046 0.54 -0.6
48,448 - Rru_A0046 0.54 -0.6
48,549 + Rru_A0046 0.74 -1.0
48,549 + Rru_A0046 0.74 +0.0
48,549 + Rru_A0046 0.74 +0.0
48,550 - Rru_A0046 0.74 -0.8
48,550 - Rru_A0046 0.74 +0.0
48,681 + +1.0
48,747 + +0.0
48,748 - +1.1
48,880 - +2.8
48,949 + Rru_A0047 0.11 +0.0
48,949 + Rru_A0047 0.11 +0.0
48,949 + Rru_A0047 0.11 +0.0
48,950 - Rru_A0047 0.11 +0.0
48,950 - Rru_A0047 0.11 +0.7
48,950 - Rru_A0047 0.11 +0.0
48,950 - Rru_A0047 0.11 +0.0
48,950 - Rru_A0047 0.11 +0.0
49,123 + Rru_A0047 0.22 -0.5
49,124 - Rru_A0047 0.22 +1.4
49,188 + Rru_A0047 0.26 +0.0
49,188 + Rru_A0047 0.26 +0.4
49,188 + Rru_A0047 0.26 +0.0
49,188 + Rru_A0047 0.26 +0.7
49,188 + Rru_A0047 0.26 +2.0
49,188 + Rru_A0047 0.26 +1.0
49,188 + Rru_A0047 0.26 +0.0
49,188 + Rru_A0047 0.26 +0.0
49,188 + Rru_A0047 0.26 +0.7
49,189 - Rru_A0047 0.26 -1.0
49,189 - Rru_A0047 0.26 +0.0
49,305 - Rru_A0047 0.33 +0.3
49,342 - Rru_A0047 0.36 -1.0
49,352 + Rru_A0047 0.36 +0.4
49,406 - Rru_A0047 0.40 -0.6
49,428 - Rru_A0047 0.41 -0.2
49,428 - Rru_A0047 0.41 +0.5
49,722 + Rru_A0047 0.59 +0.0
49,723 - Rru_A0047 0.59 -0.1
49,734 + Rru_A0047 0.60 +1.1
49,734 + Rru_A0047 0.60 -1.0
49,837 + Rru_A0047 0.66 +0.6
49,837 + Rru_A0047 0.66 +0.9
49,837 + Rru_A0047 0.66 +1.0
49,838 - Rru_A0047 0.66 +0.8
49,838 - Rru_A0047 0.66 +0.5
49,838 - Rru_A0047 0.66 +1.0
49,838 - Rru_A0047 0.66 +0.0
49,876 + Rru_A0047 0.69 -0.1
49,876 + Rru_A0047 0.69 +0.0
49,877 - Rru_A0047 0.69 +0.0
49,877 - Rru_A0047 0.69 +0.6
49,877 - Rru_A0047 0.69 -0.8
49,877 - Rru_A0047 0.69 -0.2
50,300 - -1.6
50,478 - -1.0
50,478 - +0.0
50,521 + -0.1
50,522 - +0.0
50,522 - +0.3
50,522 - +0.5
50,614 + Rru_A0048 0.15 +0.0
50,615 - Rru_A0048 0.15 -1.0
50,615 - Rru_A0048 0.15 +0.0
50,654 - Rru_A0048 0.21 +0.5
50,964 + Rru_A0048 0.71 +0.0
50,965 - Rru_A0048 0.71 +0.3
50,965 - Rru_A0048 0.71 +0.4
51,077 + Rru_A0048 0.89 +0.0
51,077 + Rru_A0048 0.89 +0.5
51,077 + Rru_A0048 0.89 +0.0
51,077 + Rru_A0048 0.89 -1.0
51,077 + Rru_A0048 0.89 +0.8
51,077 + Rru_A0048 0.89 +0.2
51,078 - Rru_A0048 0.89 +0.0
51,078 - Rru_A0048 0.89 +0.4

Or see this region's nucleotide sequence