Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0045 and Rru_A0046 are separated by 13 nucleotides Rru_A0046 and Rru_A0047 are separated by 86 nucleotides
Rru_A0045: Rru_A0045 - Beta-ketoacyl synthase (NCBI), at 46,946 to 48,160
_A0045
Rru_A0046: Rru_A0046 - Protein of unknown function DUF523 (NCBI), at 48,174 to 48,683
_A0046
Rru_A0047: Rru_A0047 - ABC transporter component (NCBI), at 48,770 to 50,377
_A0047
Position (kb) 48
49 Strain fitness (log2 ratio) -1
0
1
2
3 at 48.241 kb on - strand, within Rru_A0046 at 48.242 kb on + strand, within Rru_A0046 at 48.243 kb on - strand, within Rru_A0046 at 48.447 kb on + strand, within Rru_A0046 at 48.447 kb on + strand, within Rru_A0046 at 48.447 kb on + strand, within Rru_A0046 at 48.448 kb on - strand, within Rru_A0046 at 48.448 kb on - strand, within Rru_A0046 at 48.549 kb on + strand, within Rru_A0046 at 48.549 kb on + strand, within Rru_A0046 at 48.549 kb on + strand, within Rru_A0046 at 48.550 kb on - strand, within Rru_A0046 at 48.550 kb on - strand, within Rru_A0046 at 48.681 kb on + strand at 48.747 kb on + strand at 48.748 kb on - strand at 48.880 kb on - strand at 48.949 kb on + strand, within Rru_A0047 at 48.949 kb on + strand, within Rru_A0047 at 48.949 kb on + strand, within Rru_A0047 at 48.950 kb on - strand, within Rru_A0047 at 48.950 kb on - strand, within Rru_A0047 at 48.950 kb on - strand, within Rru_A0047 at 48.950 kb on - strand, within Rru_A0047 at 48.950 kb on - strand, within Rru_A0047 at 49.123 kb on + strand, within Rru_A0047 at 49.124 kb on - strand, within Rru_A0047 at 49.188 kb on + strand, within Rru_A0047 at 49.188 kb on + strand, within Rru_A0047 at 49.188 kb on + strand, within Rru_A0047 at 49.188 kb on + strand, within Rru_A0047 at 49.188 kb on + strand, within Rru_A0047 at 49.188 kb on + strand, within Rru_A0047 at 49.188 kb on + strand, within Rru_A0047 at 49.188 kb on + strand, within Rru_A0047 at 49.188 kb on + strand, within Rru_A0047 at 49.189 kb on - strand, within Rru_A0047 at 49.189 kb on - strand, within Rru_A0047 at 49.305 kb on - strand, within Rru_A0047 at 49.342 kb on - strand, within Rru_A0047 at 49.352 kb on + strand, within Rru_A0047 at 49.406 kb on - strand, within Rru_A0047 at 49.428 kb on - strand, within Rru_A0047 at 49.428 kb on - strand, within Rru_A0047
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 48,241 - Rru_A0046 0.13 -0.5 48,242 + Rru_A0046 0.13 -1.2 48,243 - Rru_A0046 0.14 +0.0 48,447 + Rru_A0046 0.54 +2.0 48,447 + Rru_A0046 0.54 -1.6 48,447 + Rru_A0046 0.54 -0.1 48,448 - Rru_A0046 0.54 -0.6 48,448 - Rru_A0046 0.54 -0.6 48,549 + Rru_A0046 0.74 -1.0 48,549 + Rru_A0046 0.74 +0.0 48,549 + Rru_A0046 0.74 +0.0 48,550 - Rru_A0046 0.74 -0.8 48,550 - Rru_A0046 0.74 +0.0 48,681 + +1.0 48,747 + +0.0 48,748 - +1.1 48,880 - +2.8 48,949 + Rru_A0047 0.11 +0.0 48,949 + Rru_A0047 0.11 +0.0 48,949 + Rru_A0047 0.11 +0.0 48,950 - Rru_A0047 0.11 +0.0 48,950 - Rru_A0047 0.11 +0.7 48,950 - Rru_A0047 0.11 +0.0 48,950 - Rru_A0047 0.11 +0.0 48,950 - Rru_A0047 0.11 +0.0 49,123 + Rru_A0047 0.22 -0.5 49,124 - Rru_A0047 0.22 +1.4 49,188 + Rru_A0047 0.26 +0.0 49,188 + Rru_A0047 0.26 +0.4 49,188 + Rru_A0047 0.26 +0.0 49,188 + Rru_A0047 0.26 +0.7 49,188 + Rru_A0047 0.26 +2.0 49,188 + Rru_A0047 0.26 +1.0 49,188 + Rru_A0047 0.26 +0.0 49,188 + Rru_A0047 0.26 +0.0 49,188 + Rru_A0047 0.26 +0.7 49,189 - Rru_A0047 0.26 -1.0 49,189 - Rru_A0047 0.26 +0.0 49,305 - Rru_A0047 0.33 +0.3 49,342 - Rru_A0047 0.36 -1.0 49,352 + Rru_A0047 0.36 +0.4 49,406 - Rru_A0047 0.40 -0.6 49,428 - Rru_A0047 0.41 -0.2 49,428 - Rru_A0047 0.41 +0.5
Or see this region's nucleotide sequence