Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0019 and Rru_A0020 are separated by 98 nucleotides Rru_A0020 and Rru_A0021 overlap by 4 nucleotides Rru_A0021 and Rru_A0022 are separated by 209 nucleotides
Rru_A0019: Rru_A0019 - Glutamate synthase (ferredoxin) (NCBI), at 21,176 to 25,750
_A0019
Rru_A0020: Rru_A0020 - Glutathione peroxidase (NCBI), at 25,849 to 26,355
_A0020
Rru_A0021: Rru_A0021 - Transcriptional Regulator, MarR family (NCBI), at 26,352 to 26,888
_A0021
Rru_A0022: Rru_A0022 - Glutathione S-transferase-like (NCBI), at 27,098 to 27,766
_A0022
Position (kb) 25
26
27 Strain fitness (log2 ratio) -1
0
1
2 at 25.758 kb on + strand at 25.758 kb on + strand at 25.850 kb on + strand at 25.850 kb on + strand at 25.851 kb on - strand at 25.851 kb on - strand at 25.858 kb on + strand at 25.859 kb on - strand at 26.037 kb on - strand, within Rru_A0020 at 26.037 kb on - strand, within Rru_A0020 at 26.099 kb on + strand, within Rru_A0020 at 26.099 kb on + strand, within Rru_A0020 at 26.100 kb on - strand, within Rru_A0020 at 26.100 kb on - strand, within Rru_A0020 at 26.100 kb on - strand, within Rru_A0020 at 26.100 kb on - strand, within Rru_A0020 at 26.100 kb on - strand, within Rru_A0020 at 26.231 kb on + strand, within Rru_A0020 at 26.231 kb on + strand, within Rru_A0020 at 26.232 kb on - strand, within Rru_A0020 at 26.232 kb on - strand, within Rru_A0020 at 26.232 kb on - strand, within Rru_A0020 at 26.232 kb on - strand, within Rru_A0020 at 26.292 kb on - strand, within Rru_A0020 at 26.292 kb on - strand, within Rru_A0020 at 26.342 kb on + strand at 26.708 kb on - strand, within Rru_A0021 at 26.779 kb on + strand, within Rru_A0021 at 26.779 kb on + strand, within Rru_A0021 at 26.930 kb on + strand at 26.930 kb on + strand at 26.930 kb on + strand at 27.022 kb on + strand at 27.023 kb on - strand at 27.023 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 25,758 + +2.0 25,758 + +2.4 25,850 + +0.0 25,850 + +0.8 25,851 - +2.1 25,851 - +2.2 25,858 + +0.7 25,859 - +0.0 26,037 - Rru_A0020 0.37 -1.0 26,037 - Rru_A0020 0.37 +1.4 26,099 + Rru_A0020 0.49 +0.8 26,099 + Rru_A0020 0.49 +0.0 26,100 - Rru_A0020 0.50 +0.0 26,100 - Rru_A0020 0.50 +0.0 26,100 - Rru_A0020 0.50 -0.5 26,100 - Rru_A0020 0.50 +1.2 26,100 - Rru_A0020 0.50 +0.0 26,231 + Rru_A0020 0.75 +0.0 26,231 + Rru_A0020 0.75 +0.0 26,232 - Rru_A0020 0.76 +0.3 26,232 - Rru_A0020 0.76 +1.1 26,232 - Rru_A0020 0.76 +0.9 26,232 - Rru_A0020 0.76 +1.3 26,292 - Rru_A0020 0.87 +0.0 26,292 - Rru_A0020 0.87 +0.5 26,342 + +0.0 26,708 - Rru_A0021 0.66 +1.0 26,779 + Rru_A0021 0.80 +0.0 26,779 + Rru_A0021 0.80 +0.0 26,930 + +0.0 26,930 + +1.1 26,930 + +0.0 27,022 + +0.2 27,023 - +2.2 27,023 - +1.5
Or see this region's nucleotide sequence