Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0006

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0004 and Rru_A0005 are separated by 413 nucleotidesRru_A0005 and Rru_A0006 overlap by 14 nucleotidesRru_A0006 and Rru_A0007 are separated by 105 nucleotidesRru_A0007 and Rru_A0008 are separated by 103 nucleotides Rru_A0004: Rru_A0004 - DNA gyrase, B subunit (NCBI), at 4,362 to 6,770 _A0004 Rru_A0005: Rru_A0005 - killer suppression protein HigA, putative (NCBI), at 7,184 to 7,528 _A0005 Rru_A0006: Rru_A0006 - Plasmid maintenance system antidote protein (NCBI), at 7,515 to 8,657 _A0006 Rru_A0007: Rru_A0007 - hypothetical protein (NCBI), at 8,763 to 9,104 _A0007 Rru_A0008: Rru_A0008 - hypothetical protein (NCBI), at 9,208 to 9,414 _A0008 Position (kb) 7 8 9Strain fitness (log2 ratio) -2 -1 0 1 2at 6.852 kb on + strandat 6.853 kb on - strandat 6.853 kb on - strandat 6.853 kb on - strandat 6.988 kb on - strandat 7.002 kb on + strandat 7.008 kb on - strandat 7.095 kb on - strandat 7.192 kb on + strandat 7.196 kb on + strandat 7.197 kb on - strandat 7.201 kb on + strandat 7.202 kb on - strandat 7.202 kb on - strandat 7.245 kb on + strand, within Rru_A0005at 7.246 kb on - strand, within Rru_A0005at 7.354 kb on + strand, within Rru_A0005at 7.354 kb on + strand, within Rru_A0005at 7.354 kb on + strand, within Rru_A0005at 7.411 kb on + strand, within Rru_A0005at 7.411 kb on + strand, within Rru_A0005at 7.411 kb on + strand, within Rru_A0005at 7.411 kb on + strand, within Rru_A0005at 7.412 kb on - strand, within Rru_A0005at 7.412 kb on - strand, within Rru_A0005at 7.471 kb on + strand, within Rru_A0005at 7.471 kb on + strand, within Rru_A0005at 7.472 kb on - strand, within Rru_A0005at 7.472 kb on - strand, within Rru_A0005at 7.472 kb on - strand, within Rru_A0005at 7.472 kb on - strand, within Rru_A0005at 7.472 kb on - strand, within Rru_A0005at 7.472 kb on - strand, within Rru_A0005at 7.511 kb on + strandat 7.512 kb on - strandat 8.099 kb on + strand, within Rru_A0006at 8.099 kb on + strand, within Rru_A0006at 8.099 kb on + strand, within Rru_A0006at 8.279 kb on + strand, within Rru_A0006at 8.280 kb on - strand, within Rru_A0006at 8.580 kb on + strandat 8.655 kb on + strandat 8.656 kb on - strandat 8.700 kb on - strandat 9.233 kb on + strand, within Rru_A0008at 9.233 kb on + strand, within Rru_A0008at 9.233 kb on + strand, within Rru_A0008at 9.234 kb on - strand, within Rru_A0008at 9.234 kb on - strand, within Rru_A0008at 9.234 kb on - strand, within Rru_A0008at 9.234 kb on - strand, within Rru_A0008at 9.275 kb on + strand, within Rru_A0008at 9.275 kb on + strand, within Rru_A0008at 9.275 kb on + strand, within Rru_A0008at 9.275 kb on + strand, within Rru_A0008at 9.275 kb on + strand, within Rru_A0008at 9.276 kb on - strand, within Rru_A0008at 9.375 kb on + strand, within Rru_A0008at 9.393 kb on + strand, within Rru_A0008at 9.393 kb on + strand, within Rru_A0008at 9.414 kb on + strandat 9.415 kb on - strandat 9.499 kb on + strandat 9.499 kb on + strandat 9.500 kb on - strandat 9.500 kb on - strandat 9.505 kb on + strandat 9.510 kb on + strandat 9.510 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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6,852 + +0.6
6,853 - +0.0
6,853 - +0.0
6,853 - +0.0
6,988 - +1.3
7,002 + -1.6
7,008 - +1.3
7,095 - +0.0
7,192 + +0.0
7,196 + -0.6
7,197 - +0.0
7,201 + -0.5
7,202 - +0.5
7,202 - +0.0
7,245 + Rru_A0005 0.18 +0.2
7,246 - Rru_A0005 0.18 +0.0
7,354 + Rru_A0005 0.49 +0.7
7,354 + Rru_A0005 0.49 +0.0
7,354 + Rru_A0005 0.49 -1.6
7,411 + Rru_A0005 0.66 -2.0
7,411 + Rru_A0005 0.66 +0.8
7,411 + Rru_A0005 0.66 -0.1
7,411 + Rru_A0005 0.66 -2.0
7,412 - Rru_A0005 0.66 +0.5
7,412 - Rru_A0005 0.66 +0.0
7,471 + Rru_A0005 0.83 +0.0
7,471 + Rru_A0005 0.83 -0.2
7,472 - Rru_A0005 0.83 +0.0
7,472 - Rru_A0005 0.83 +0.6
7,472 - Rru_A0005 0.83 +0.0
7,472 - Rru_A0005 0.83 -1.0
7,472 - Rru_A0005 0.83 +0.4
7,472 - Rru_A0005 0.83 +0.0
7,511 + +0.0
7,512 - -0.3
8,099 + Rru_A0006 0.51 +0.0
8,099 + Rru_A0006 0.51 -1.9
8,099 + Rru_A0006 0.51 +0.0
8,279 + Rru_A0006 0.67 -0.6
8,280 - Rru_A0006 0.67 +0.0
8,580 + +0.9
8,655 + +1.9
8,656 - +0.0
8,700 - -1.0
9,233 + Rru_A0008 0.12 +0.0
9,233 + Rru_A0008 0.12 -0.7
9,233 + Rru_A0008 0.12 +1.4
9,234 - Rru_A0008 0.13 +0.4
9,234 - Rru_A0008 0.13 +0.9
9,234 - Rru_A0008 0.13 +0.0
9,234 - Rru_A0008 0.13 -1.6
9,275 + Rru_A0008 0.32 +0.0
9,275 + Rru_A0008 0.32 +0.5
9,275 + Rru_A0008 0.32 +0.8
9,275 + Rru_A0008 0.32 -0.4
9,275 + Rru_A0008 0.32 +0.1
9,276 - Rru_A0008 0.33 +0.7
9,375 + Rru_A0008 0.81 +0.0
9,393 + Rru_A0008 0.89 +0.0
9,393 + Rru_A0008 0.89 +0.0
9,414 + +0.6
9,415 - +0.0
9,499 + -0.9
9,499 + -0.1
9,500 - +0.5
9,500 - +0.0
9,505 + +0.7
9,510 + +0.1
9,510 + +0.7

Or see this region's nucleotide sequence