Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0050

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_B0048 and Rru_B0049 overlap by 4 nucleotidesRru_B0049 and Rru_B0050 are separated by 2 nucleotides Rru_B0048: Rru_B0048 - Glucose-1-phosphate thymidylyltransferase, long form (NCBI), at 50,713 to 51,597 _B0048 Rru_B0049: Rru_B0049 - dTDP-4-dehydrorhamnose reductase (NCBI), at 51,594 to 52,526 _B0049 Rru_B0050: Rru_B0050 - dTDP-glucose 4,6-dehydratase (NCBI), at 52,529 to 53,584 _B0050 Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1at 51.859 kb on + strand, within Rru_B0049at 51.860 kb on - strand, within Rru_B0049at 52.567 kb on - strandat 52.567 kb on - strandat 52.734 kb on + strand, within Rru_B0050at 53.271 kb on + strand, within Rru_B0050at 53.478 kb on + strand, within Rru_B0050at 53.662 kb on + strandat 53.663 kb on - strandat 53.663 kb on - strandat 53.663 kb on - strandat 53.663 kb on - strandat 53.663 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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51,859 + Rru_B0049 0.28 -0.3
51,860 - Rru_B0049 0.29 -0.3
52,567 - -1.6
52,567 - -0.3
52,734 + Rru_B0050 0.19 -1.5
53,271 + Rru_B0050 0.70 -0.3
53,478 + Rru_B0050 0.90 -0.3
53,662 + -0.3
53,663 - -0.3
53,663 - -0.3
53,663 - +0.8
53,663 - -1.9
53,663 - +1.3

Or see this region's nucleotide sequence