Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0046

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_B0045 and Rru_B0046 are separated by 37 nucleotidesRru_B0046 and Rru_B0047 are separated by 42 nucleotides Rru_B0045: Rru_B0045 - Phosphomannomutase (NCBI), at 46,714 to 48,117 _B0045 Rru_B0046: Rru_B0046 - Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (NCBI), at 48,155 to 49,639 _B0046 Rru_B0047: Rru_B0047 - NAD-dependent epimerase/dehydratase (NCBI), at 49,682 to 50,716 _B0047 Position (kb) 48 49 50Strain fitness (log2 ratio) -2 -1 0 1 2 3at 47.368 kb on - strand, within Rru_B0045at 47.711 kb on - strand, within Rru_B0045at 47.711 kb on - strand, within Rru_B0045at 47.711 kb on - strand, within Rru_B0045at 47.713 kb on + strand, within Rru_B0045at 47.713 kb on + strand, within Rru_B0045at 47.714 kb on - strand, within Rru_B0045at 47.734 kb on + strand, within Rru_B0045at 47.734 kb on + strand, within Rru_B0045at 47.735 kb on - strand, within Rru_B0045at 47.735 kb on - strand, within Rru_B0045at 47.821 kb on - strand, within Rru_B0045at 47.821 kb on - strand, within Rru_B0045at 47.821 kb on - strand, within Rru_B0045at 47.821 kb on - strand, within Rru_B0045at 47.976 kb on + strand, within Rru_B0045at 47.977 kb on - strandat 48.115 kb on + strandat 48.116 kb on - strandat 48.184 kb on - strandat 48.222 kb on + strandat 48.403 kb on + strand, within Rru_B0046at 48.404 kb on - strand, within Rru_B0046at 48.638 kb on + strand, within Rru_B0046at 48.638 kb on + strand, within Rru_B0046at 48.638 kb on + strand, within Rru_B0046at 48.638 kb on + strand, within Rru_B0046at 48.638 kb on + strand, within Rru_B0046at 48.638 kb on + strand, within Rru_B0046at 48.639 kb on - strand, within Rru_B0046at 48.639 kb on - strand, within Rru_B0046at 48.639 kb on - strand, within Rru_B0046at 48.639 kb on - strand, within Rru_B0046at 48.639 kb on - strand, within Rru_B0046at 48.732 kb on - strand, within Rru_B0046at 48.732 kb on - strand, within Rru_B0046at 48.732 kb on - strand, within Rru_B0046at 48.732 kb on - strand, within Rru_B0046at 48.749 kb on + strand, within Rru_B0046at 48.749 kb on + strand, within Rru_B0046at 48.749 kb on + strand, within Rru_B0046at 48.749 kb on + strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.791 kb on + strand, within Rru_B0046at 48.791 kb on + strand, within Rru_B0046at 48.792 kb on - strand, within Rru_B0046at 48.792 kb on - strand, within Rru_B0046at 48.792 kb on - strand, within Rru_B0046at 48.929 kb on + strand, within Rru_B0046at 48.930 kb on - strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.090 kb on + strand, within Rru_B0046at 49.090 kb on + strand, within Rru_B0046at 49.091 kb on - strand, within Rru_B0046at 49.091 kb on - strand, within Rru_B0046at 49.091 kb on - strand, within Rru_B0046at 49.255 kb on + strand, within Rru_B0046at 49.255 kb on + strand, within Rru_B0046at 49.255 kb on + strand, within Rru_B0046at 49.255 kb on + strand, within Rru_B0046at 49.256 kb on - strand, within Rru_B0046at 49.256 kb on - strand, within Rru_B0046at 49.256 kb on - strand, within Rru_B0046at 49.281 kb on - strand, within Rru_B0046at 49.281 kb on - strand, within Rru_B0046at 49.410 kb on + strand, within Rru_B0046at 49.411 kb on - strand, within Rru_B0046at 49.411 kb on - strand, within Rru_B0046at 49.457 kb on + strand, within Rru_B0046at 49.457 kb on + strand, within Rru_B0046at 49.457 kb on + strand, within Rru_B0046at 49.457 kb on + strand, within Rru_B0046at 49.457 kb on + strand, within Rru_B0046at 49.457 kb on + strand, within Rru_B0046at 49.457 kb on + strand, within Rru_B0046at 49.457 kb on + strand, within Rru_B0046at 49.458 kb on - strand, within Rru_B0046at 49.458 kb on - strand, within Rru_B0046at 49.458 kb on - strand, within Rru_B0046at 49.458 kb on - strand, within Rru_B0046at 49.459 kb on + strand, within Rru_B0046at 49.460 kb on - strand, within Rru_B0046at 49.460 kb on - strand, within Rru_B0046at 49.613 kb on - strandat 49.681 kb on + strandat 49.681 kb on + strandat 49.699 kb on + strandat 49.700 kb on - strandat 49.730 kb on + strandat 49.801 kb on + strand, within Rru_B0047at 49.803 kb on + strand, within Rru_B0047at 49.880 kb on + strand, within Rru_B0047at 50.045 kb on + strand, within Rru_B0047at 50.045 kb on + strand, within Rru_B0047at 50.046 kb on - strand, within Rru_B0047at 50.114 kb on + strand, within Rru_B0047at 50.145 kb on + strand, within Rru_B0047at 50.145 kb on + strand, within Rru_B0047at 50.145 kb on + strand, within Rru_B0047at 50.146 kb on - strand, within Rru_B0047at 50.146 kb on - strand, within Rru_B0047at 50.146 kb on - strand, within Rru_B0047at 50.147 kb on + strand, within Rru_B0047at 50.147 kb on + strand, within Rru_B0047at 50.147 kb on + strand, within Rru_B0047at 50.147 kb on + strand, within Rru_B0047at 50.147 kb on + strand, within Rru_B0047at 50.148 kb on - strand, within Rru_B0047at 50.171 kb on + strand, within Rru_B0047at 50.172 kb on - strand, within Rru_B0047at 50.357 kb on + strand, within Rru_B0047at 50.357 kb on + strand, within Rru_B0047at 50.358 kb on - strand, within Rru_B0047at 50.358 kb on - strand, within Rru_B0047at 50.406 kb on - strand, within Rru_B0047at 50.406 kb on - strand, within Rru_B0047at 50.407 kb on + strand, within Rru_B0047at 50.407 kb on + strand, within Rru_B0047

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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47,368 - Rru_B0045 0.47 -1.3
47,711 - Rru_B0045 0.71 +0.8
47,711 - Rru_B0045 0.71 +0.8
47,711 - Rru_B0045 0.71 +0.2
47,713 + Rru_B0045 0.71 -0.4
47,713 + Rru_B0045 0.71 +0.6
47,714 - Rru_B0045 0.71 -0.3
47,734 + Rru_B0045 0.73 -0.3
47,734 + Rru_B0045 0.73 -0.3
47,735 - Rru_B0045 0.73 +0.2
47,735 - Rru_B0045 0.73 -1.3
47,821 - Rru_B0045 0.79 -0.3
47,821 - Rru_B0045 0.79 -0.3
47,821 - Rru_B0045 0.79 +0.3
47,821 - Rru_B0045 0.79 +0.7
47,976 + Rru_B0045 0.90 -0.3
47,977 - -0.3
48,115 + +0.3
48,116 - +0.7
48,184 - +1.0
48,222 + -0.3
48,403 + Rru_B0046 0.17 -0.3
48,404 - Rru_B0046 0.17 +1.4
48,638 + Rru_B0046 0.33 -0.3
48,638 + Rru_B0046 0.33 +2.0
48,638 + Rru_B0046 0.33 +1.0
48,638 + Rru_B0046 0.33 +1.3
48,638 + Rru_B0046 0.33 +0.7
48,638 + Rru_B0046 0.33 +1.4
48,639 - Rru_B0046 0.33 -1.3
48,639 - Rru_B0046 0.33 +1.3
48,639 - Rru_B0046 0.33 +1.0
48,639 - Rru_B0046 0.33 +0.7
48,639 - Rru_B0046 0.33 -1.3
48,732 - Rru_B0046 0.39 +1.2
48,732 - Rru_B0046 0.39 -0.3
48,732 - Rru_B0046 0.39 +1.1
48,732 - Rru_B0046 0.39 +1.9
48,749 + Rru_B0046 0.40 +0.6
48,749 + Rru_B0046 0.40 -0.3
48,749 + Rru_B0046 0.40 -0.3
48,749 + Rru_B0046 0.40 +1.6
48,750 - Rru_B0046 0.40 +1.4
48,750 - Rru_B0046 0.40 -0.3
48,750 - Rru_B0046 0.40 +0.8
48,750 - Rru_B0046 0.40 +1.0
48,750 - Rru_B0046 0.40 -0.3
48,750 - Rru_B0046 0.40 +1.1
48,750 - Rru_B0046 0.40 +1.2
48,791 + Rru_B0046 0.43 +1.2
48,791 + Rru_B0046 0.43 -0.3
48,792 - Rru_B0046 0.43 -0.3
48,792 - Rru_B0046 0.43 +0.8
48,792 - Rru_B0046 0.43 +1.8
48,929 + Rru_B0046 0.52 +1.0
48,930 - Rru_B0046 0.52 -0.3
49,088 + Rru_B0046 0.63 +1.4
49,088 + Rru_B0046 0.63 +0.7
49,088 + Rru_B0046 0.63 +1.1
49,088 + Rru_B0046 0.63 +0.5
49,088 + Rru_B0046 0.63 -0.3
49,088 + Rru_B0046 0.63 -0.3
49,088 + Rru_B0046 0.63 -0.3
49,088 + Rru_B0046 0.63 +1.1
49,088 + Rru_B0046 0.63 -0.3
49,088 + Rru_B0046 0.63 +3.5
49,088 + Rru_B0046 0.63 -0.3
49,088 + Rru_B0046 0.63 +0.2
49,089 - Rru_B0046 0.63 -0.3
49,089 - Rru_B0046 0.63 +2.3
49,089 - Rru_B0046 0.63 -0.3
49,089 - Rru_B0046 0.63 +1.1
49,089 - Rru_B0046 0.63 -0.3
49,089 - Rru_B0046 0.63 -0.3
49,089 - Rru_B0046 0.63 +1.0
49,089 - Rru_B0046 0.63 -1.3
49,089 - Rru_B0046 0.63 +1.4
49,089 - Rru_B0046 0.63 +1.0
49,089 - Rru_B0046 0.63 +1.2
49,089 - Rru_B0046 0.63 -0.3
49,090 + Rru_B0046 0.63 +1.2
49,090 + Rru_B0046 0.63 +1.0
49,091 - Rru_B0046 0.63 +1.3
49,091 - Rru_B0046 0.63 +0.9
49,091 - Rru_B0046 0.63 -0.3
49,255 + Rru_B0046 0.74 -0.3
49,255 + Rru_B0046 0.74 -0.5
49,255 + Rru_B0046 0.74 +0.6
49,255 + Rru_B0046 0.74 +1.0
49,256 - Rru_B0046 0.74 -0.2
49,256 - Rru_B0046 0.74 +0.6
49,256 - Rru_B0046 0.74 +0.5
49,281 - Rru_B0046 0.76 +0.6
49,281 - Rru_B0046 0.76 -0.3
49,410 + Rru_B0046 0.85 -0.3
49,411 - Rru_B0046 0.85 +1.7
49,411 - Rru_B0046 0.85 +1.5
49,457 + Rru_B0046 0.88 -0.7
49,457 + Rru_B0046 0.88 +0.7
49,457 + Rru_B0046 0.88 -0.3
49,457 + Rru_B0046 0.88 -1.0
49,457 + Rru_B0046 0.88 -0.3
49,457 + Rru_B0046 0.88 +1.0
49,457 + Rru_B0046 0.88 -0.2
49,457 + Rru_B0046 0.88 -0.3
49,458 - Rru_B0046 0.88 -0.3
49,458 - Rru_B0046 0.88 +2.6
49,458 - Rru_B0046 0.88 +2.2
49,458 - Rru_B0046 0.88 -0.3
49,459 + Rru_B0046 0.88 +1.1
49,460 - Rru_B0046 0.88 -0.3
49,460 - Rru_B0046 0.88 -2.3
49,613 - -0.3
49,681 + -0.3
49,681 + -0.9
49,699 + -0.3
49,700 - +1.3
49,730 + -0.3
49,801 + Rru_B0047 0.11 -1.3
49,803 + Rru_B0047 0.12 -1.3
49,880 + Rru_B0047 0.19 -0.7
50,045 + Rru_B0047 0.35 -0.3
50,045 + Rru_B0047 0.35 -0.2
50,046 - Rru_B0047 0.35 +1.4
50,114 + Rru_B0047 0.42 -0.3
50,145 + Rru_B0047 0.45 +1.0
50,145 + Rru_B0047 0.45 -0.3
50,145 + Rru_B0047 0.45 -0.4
50,146 - Rru_B0047 0.45 +0.2
50,146 - Rru_B0047 0.45 -0.4
50,146 - Rru_B0047 0.45 +1.1
50,147 + Rru_B0047 0.45 -0.3
50,147 + Rru_B0047 0.45 -0.3
50,147 + Rru_B0047 0.45 -0.3
50,147 + Rru_B0047 0.45 +0.6
50,147 + Rru_B0047 0.45 +1.2
50,148 - Rru_B0047 0.45 -0.1
50,171 + Rru_B0047 0.47 +0.3
50,172 - Rru_B0047 0.47 +0.2
50,357 + Rru_B0047 0.65 -0.3
50,357 + Rru_B0047 0.65 +0.3
50,358 - Rru_B0047 0.65 -0.3
50,358 - Rru_B0047 0.65 -0.8
50,406 - Rru_B0047 0.70 -1.9
50,406 - Rru_B0047 0.70 +0.8
50,407 + Rru_B0047 0.70 -0.3
50,407 + Rru_B0047 0.70 -0.3

Or see this region's nucleotide sequence