Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0045

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_B0044 and Rru_B0045 are separated by 57 nucleotidesRru_B0045 and Rru_B0046 are separated by 37 nucleotides Rru_B0044: Rru_B0044 - Glycosyl transferase, family 2 (NCBI), at 44,416 to 46,656 _B0044 Rru_B0045: Rru_B0045 - Phosphomannomutase (NCBI), at 46,714 to 48,117 _B0045 Rru_B0046: Rru_B0046 - Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (NCBI), at 48,155 to 49,639 _B0046 Position (kb) 46 47 48 49Strain fitness (log2 ratio) -1 0 1 2 3at 46.163 kb on - strand, within Rru_B0044at 46.511 kb on + strandat 46.747 kb on + strandat 46.747 kb on + strandat 46.747 kb on + strandat 46.748 kb on - strandat 46.748 kb on - strandat 46.748 kb on - strandat 46.748 kb on - strandat 46.972 kb on + strand, within Rru_B0045at 46.973 kb on - strand, within Rru_B0045at 47.028 kb on + strand, within Rru_B0045at 47.029 kb on - strand, within Rru_B0045at 47.368 kb on - strand, within Rru_B0045at 47.711 kb on - strand, within Rru_B0045at 47.711 kb on - strand, within Rru_B0045at 47.711 kb on - strand, within Rru_B0045at 47.713 kb on + strand, within Rru_B0045at 47.713 kb on + strand, within Rru_B0045at 47.714 kb on - strand, within Rru_B0045at 47.734 kb on + strand, within Rru_B0045at 47.734 kb on + strand, within Rru_B0045at 47.735 kb on - strand, within Rru_B0045at 47.735 kb on - strand, within Rru_B0045at 47.821 kb on - strand, within Rru_B0045at 47.821 kb on - strand, within Rru_B0045at 47.821 kb on - strand, within Rru_B0045at 47.821 kb on - strand, within Rru_B0045at 47.976 kb on + strand, within Rru_B0045at 47.977 kb on - strandat 48.115 kb on + strandat 48.116 kb on - strandat 48.184 kb on - strandat 48.222 kb on + strandat 48.403 kb on + strand, within Rru_B0046at 48.404 kb on - strand, within Rru_B0046at 48.638 kb on + strand, within Rru_B0046at 48.638 kb on + strand, within Rru_B0046at 48.638 kb on + strand, within Rru_B0046at 48.638 kb on + strand, within Rru_B0046at 48.638 kb on + strand, within Rru_B0046at 48.638 kb on + strand, within Rru_B0046at 48.639 kb on - strand, within Rru_B0046at 48.639 kb on - strand, within Rru_B0046at 48.639 kb on - strand, within Rru_B0046at 48.639 kb on - strand, within Rru_B0046at 48.639 kb on - strand, within Rru_B0046at 48.732 kb on - strand, within Rru_B0046at 48.732 kb on - strand, within Rru_B0046at 48.732 kb on - strand, within Rru_B0046at 48.732 kb on - strand, within Rru_B0046at 48.749 kb on + strand, within Rru_B0046at 48.749 kb on + strand, within Rru_B0046at 48.749 kb on + strand, within Rru_B0046at 48.749 kb on + strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.750 kb on - strand, within Rru_B0046at 48.791 kb on + strand, within Rru_B0046at 48.791 kb on + strand, within Rru_B0046at 48.792 kb on - strand, within Rru_B0046at 48.792 kb on - strand, within Rru_B0046at 48.792 kb on - strand, within Rru_B0046at 48.929 kb on + strand, within Rru_B0046at 48.930 kb on - strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.088 kb on + strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.089 kb on - strand, within Rru_B0046at 49.090 kb on + strand, within Rru_B0046at 49.090 kb on + strand, within Rru_B0046at 49.091 kb on - strand, within Rru_B0046at 49.091 kb on - strand, within Rru_B0046at 49.091 kb on - strand, within Rru_B0046

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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46,163 - Rru_B0044 0.78 -0.3
46,511 + -1.3
46,747 + +0.8
46,747 + +0.3
46,747 + +0.9
46,748 - -0.3
46,748 - -0.1
46,748 - -0.3
46,748 - +0.3
46,972 + Rru_B0045 0.18 -0.0
46,973 - Rru_B0045 0.18 +0.2
47,028 + Rru_B0045 0.22 -0.0
47,029 - Rru_B0045 0.22 -1.3
47,368 - Rru_B0045 0.47 -1.3
47,711 - Rru_B0045 0.71 +0.8
47,711 - Rru_B0045 0.71 +0.8
47,711 - Rru_B0045 0.71 +0.2
47,713 + Rru_B0045 0.71 -0.4
47,713 + Rru_B0045 0.71 +0.6
47,714 - Rru_B0045 0.71 -0.3
47,734 + Rru_B0045 0.73 -0.3
47,734 + Rru_B0045 0.73 -0.3
47,735 - Rru_B0045 0.73 +0.2
47,735 - Rru_B0045 0.73 -1.3
47,821 - Rru_B0045 0.79 -0.3
47,821 - Rru_B0045 0.79 -0.3
47,821 - Rru_B0045 0.79 +0.3
47,821 - Rru_B0045 0.79 +0.7
47,976 + Rru_B0045 0.90 -0.3
47,977 - -0.3
48,115 + +0.3
48,116 - +0.7
48,184 - +1.0
48,222 + -0.3
48,403 + Rru_B0046 0.17 -0.3
48,404 - Rru_B0046 0.17 +1.4
48,638 + Rru_B0046 0.33 -0.3
48,638 + Rru_B0046 0.33 +2.0
48,638 + Rru_B0046 0.33 +1.0
48,638 + Rru_B0046 0.33 +1.3
48,638 + Rru_B0046 0.33 +0.7
48,638 + Rru_B0046 0.33 +1.4
48,639 - Rru_B0046 0.33 -1.3
48,639 - Rru_B0046 0.33 +1.3
48,639 - Rru_B0046 0.33 +1.0
48,639 - Rru_B0046 0.33 +0.7
48,639 - Rru_B0046 0.33 -1.3
48,732 - Rru_B0046 0.39 +1.2
48,732 - Rru_B0046 0.39 -0.3
48,732 - Rru_B0046 0.39 +1.1
48,732 - Rru_B0046 0.39 +1.9
48,749 + Rru_B0046 0.40 +0.6
48,749 + Rru_B0046 0.40 -0.3
48,749 + Rru_B0046 0.40 -0.3
48,749 + Rru_B0046 0.40 +1.6
48,750 - Rru_B0046 0.40 +1.4
48,750 - Rru_B0046 0.40 -0.3
48,750 - Rru_B0046 0.40 +0.8
48,750 - Rru_B0046 0.40 +1.0
48,750 - Rru_B0046 0.40 -0.3
48,750 - Rru_B0046 0.40 +1.1
48,750 - Rru_B0046 0.40 +1.2
48,791 + Rru_B0046 0.43 +1.2
48,791 + Rru_B0046 0.43 -0.3
48,792 - Rru_B0046 0.43 -0.3
48,792 - Rru_B0046 0.43 +0.8
48,792 - Rru_B0046 0.43 +1.8
48,929 + Rru_B0046 0.52 +1.0
48,930 - Rru_B0046 0.52 -0.3
49,088 + Rru_B0046 0.63 +1.4
49,088 + Rru_B0046 0.63 +0.7
49,088 + Rru_B0046 0.63 +1.1
49,088 + Rru_B0046 0.63 +0.5
49,088 + Rru_B0046 0.63 -0.3
49,088 + Rru_B0046 0.63 -0.3
49,088 + Rru_B0046 0.63 -0.3
49,088 + Rru_B0046 0.63 +1.1
49,088 + Rru_B0046 0.63 -0.3
49,088 + Rru_B0046 0.63 +3.5
49,088 + Rru_B0046 0.63 -0.3
49,088 + Rru_B0046 0.63 +0.2
49,089 - Rru_B0046 0.63 -0.3
49,089 - Rru_B0046 0.63 +2.3
49,089 - Rru_B0046 0.63 -0.3
49,089 - Rru_B0046 0.63 +1.1
49,089 - Rru_B0046 0.63 -0.3
49,089 - Rru_B0046 0.63 -0.3
49,089 - Rru_B0046 0.63 +1.0
49,089 - Rru_B0046 0.63 -1.3
49,089 - Rru_B0046 0.63 +1.4
49,089 - Rru_B0046 0.63 +1.0
49,089 - Rru_B0046 0.63 +1.2
49,089 - Rru_B0046 0.63 -0.3
49,090 + Rru_B0046 0.63 +1.2
49,090 + Rru_B0046 0.63 +1.0
49,091 - Rru_B0046 0.63 +1.3
49,091 - Rru_B0046 0.63 +0.9
49,091 - Rru_B0046 0.63 -0.3

Or see this region's nucleotide sequence