Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_B0040 and Rru_B0041 are separated by 147 nucleotides Rru_B0041 and Rru_B0042 are separated by 34 nucleotides Rru_B0042 and Rru_B0043 are separated by 103 nucleotides
Rru_B0040: Rru_B0040 - Type I secretion membrane fusion protein, HlyD (NCBI), at 40,773 to 42,251
_B0040
Rru_B0041: Rru_B0041 - Transcriptional Regulator, XRE family (NCBI), at 42,399 to 42,710
_B0041
Rru_B0042: Rru_B0042 - hypothetical protein (NCBI), at 42,745 to 43,599
_B0042
Rru_B0043: Rru_B0043 - hypothetical protein (NCBI), at 43,703 to 44,356
_B0043
Position (kb) 42
43 Strain fitness (log2 ratio) -2
-1
0
1
2 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.400 kb on - strand, within Rru_B0040 at 41.400 kb on - strand, within Rru_B0040 at 41.400 kb on - strand, within Rru_B0040 at 41.556 kb on + strand, within Rru_B0040 at 41.556 kb on + strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.558 kb on + strand, within Rru_B0040 at 41.559 kb on - strand, within Rru_B0040 at 41.627 kb on + strand, within Rru_B0040 at 41.627 kb on + strand, within Rru_B0040 at 41.627 kb on + strand, within Rru_B0040 at 41.627 kb on + strand, within Rru_B0040 at 41.627 kb on + strand, within Rru_B0040 at 41.628 kb on - strand, within Rru_B0040 at 41.628 kb on - strand, within Rru_B0040 at 41.846 kb on + strand, within Rru_B0040 at 41.846 kb on + strand, within Rru_B0040 at 41.846 kb on + strand, within Rru_B0040 at 42.069 kb on - strand, within Rru_B0040 at 42.078 kb on + strand, within Rru_B0040 at 42.078 kb on + strand, within Rru_B0040 at 42.078 kb on + strand, within Rru_B0040 at 42.078 kb on + strand, within Rru_B0040 at 42.078 kb on + strand, within Rru_B0040 at 42.079 kb on - strand, within Rru_B0040 at 42.079 kb on - strand, within Rru_B0040 at 42.079 kb on - strand, within Rru_B0040 at 42.079 kb on - strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.199 kb on - strand at 42.199 kb on - strand at 42.199 kb on - strand at 42.249 kb on + strand at 42.249 kb on + strand at 42.250 kb on - strand at 42.250 kb on - strand at 42.250 kb on - strand at 42.250 kb on - strand at 42.309 kb on + strand at 42.310 kb on - strand at 42.318 kb on + strand at 42.318 kb on + strand at 42.318 kb on + strand at 42.318 kb on + strand at 42.319 kb on - strand at 42.319 kb on - strand at 42.319 kb on - strand at 42.321 kb on + strand at 42.321 kb on + strand at 42.321 kb on + strand at 42.322 kb on - strand at 42.322 kb on - strand at 42.326 kb on + strand at 42.326 kb on + strand at 42.327 kb on - strand at 42.327 kb on - strand at 42.369 kb on + strand at 42.402 kb on + strand at 42.402 kb on + strand at 42.403 kb on - strand at 42.403 kb on - strand at 42.534 kb on + strand, within Rru_B0041 at 42.537 kb on + strand, within Rru_B0041 at 42.657 kb on + strand, within Rru_B0041 at 42.657 kb on + strand, within Rru_B0041 at 42.657 kb on + strand, within Rru_B0041 at 42.658 kb on - strand, within Rru_B0041 at 42.672 kb on + strand, within Rru_B0041 at 42.672 kb on + strand, within Rru_B0041 at 42.673 kb on - strand, within Rru_B0041 at 42.673 kb on - strand, within Rru_B0041 at 42.673 kb on - strand, within Rru_B0041 at 42.673 kb on - strand, within Rru_B0041 at 42.708 kb on + strand at 42.709 kb on - strand at 42.709 kb on - strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.838 kb on + strand, within Rru_B0042 at 42.839 kb on - strand, within Rru_B0042 at 42.839 kb on - strand, within Rru_B0042 at 42.839 kb on - strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.929 kb on - strand, within Rru_B0042 at 42.929 kb on - strand, within Rru_B0042 at 42.929 kb on - strand, within Rru_B0042 at 42.929 kb on - strand, within Rru_B0042 at 43.409 kb on + strand, within Rru_B0042 at 43.409 kb on + strand, within Rru_B0042 at 43.409 kb on + strand, within Rru_B0042 at 43.410 kb on - strand, within Rru_B0042 at 43.541 kb on + strand at 43.542 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 41,399 + Rru_B0040 0.42 +1.3 41,399 + Rru_B0040 0.42 -1.9 41,399 + Rru_B0040 0.42 -1.9 41,399 + Rru_B0040 0.42 -1.3 41,399 + Rru_B0040 0.42 -0.3 41,399 + Rru_B0040 0.42 -1.3 41,399 + Rru_B0040 0.42 +0.4 41,400 - Rru_B0040 0.42 -0.3 41,400 - Rru_B0040 0.42 +1.5 41,400 - Rru_B0040 0.42 -1.3 41,556 + Rru_B0040 0.53 +0.2 41,556 + Rru_B0040 0.53 -1.3 41,557 - Rru_B0040 0.53 +0.9 41,557 - Rru_B0040 0.53 -0.3 41,557 - Rru_B0040 0.53 -0.0 41,557 - Rru_B0040 0.53 +0.7 41,557 - Rru_B0040 0.53 +1.5 41,557 - Rru_B0040 0.53 +0.9 41,557 - Rru_B0040 0.53 +1.2 41,558 + Rru_B0040 0.53 +0.7 41,559 - Rru_B0040 0.53 -0.3 41,627 + Rru_B0040 0.58 -0.3 41,627 + Rru_B0040 0.58 +0.9 41,627 + Rru_B0040 0.58 +0.4 41,627 + Rru_B0040 0.58 -0.3 41,627 + Rru_B0040 0.58 +0.8 41,628 - Rru_B0040 0.58 -0.3 41,628 - Rru_B0040 0.58 +1.1 41,846 + Rru_B0040 0.73 +1.5 41,846 + Rru_B0040 0.73 +0.3 41,846 + Rru_B0040 0.73 -0.3 42,069 - Rru_B0040 0.88 -1.3 42,078 + Rru_B0040 0.88 -0.3 42,078 + Rru_B0040 0.88 -0.3 42,078 + Rru_B0040 0.88 +0.6 42,078 + Rru_B0040 0.88 +1.1 42,078 + Rru_B0040 0.88 +1.6 42,079 - Rru_B0040 0.88 +0.7 42,079 - Rru_B0040 0.88 +0.9 42,079 - Rru_B0040 0.88 +0.2 42,079 - Rru_B0040 0.88 +1.5 42,081 + Rru_B0040 0.88 -1.3 42,081 + Rru_B0040 0.88 -0.3 42,081 + Rru_B0040 0.88 +0.4 42,081 + Rru_B0040 0.88 -0.3 42,081 + Rru_B0040 0.88 +1.1 42,081 + Rru_B0040 0.88 +1.1 42,081 + Rru_B0040 0.88 +0.1 42,082 - Rru_B0040 0.89 +0.6 42,082 - Rru_B0040 0.89 +2.0 42,082 - Rru_B0040 0.89 +0.8 42,082 - Rru_B0040 0.89 +0.8 42,082 - Rru_B0040 0.89 +0.6 42,082 - Rru_B0040 0.89 -1.3 42,199 - +0.3 42,199 - +0.6 42,199 - -0.3 42,249 + -0.3 42,249 + +0.7 42,250 - +1.1 42,250 - +0.2 42,250 - +0.3 42,250 - -0.3 42,309 + -1.3 42,310 - -0.6 42,318 + +2.0 42,318 + -0.3 42,318 + +0.7 42,318 + -0.3 42,319 - -0.3 42,319 - -0.3 42,319 - +0.7 42,321 + +1.2 42,321 + -0.3 42,321 + -0.3 42,322 - -0.3 42,322 - -1.3 42,326 + +1.2 42,326 + -0.3 42,327 - -0.3 42,327 - -0.3 42,369 + +0.2 42,402 + -0.3 42,402 + +0.5 42,403 - -1.9 42,403 - -0.3 42,534 + Rru_B0041 0.43 +1.0 42,537 + Rru_B0041 0.44 +0.3 42,657 + Rru_B0041 0.83 +0.8 42,657 + Rru_B0041 0.83 +1.2 42,657 + Rru_B0041 0.83 +0.4 42,658 - Rru_B0041 0.83 -0.3 42,672 + Rru_B0041 0.88 +1.0 42,672 + Rru_B0041 0.88 +0.4 42,673 - Rru_B0041 0.88 +0.3 42,673 - Rru_B0041 0.88 +0.4 42,673 - Rru_B0041 0.88 +0.6 42,673 - Rru_B0041 0.88 +0.7 42,708 + +0.7 42,709 - -0.3 42,709 - +0.4 42,727 + -0.3 42,727 + -0.3 42,727 + -0.3 42,727 + -0.3 42,727 + -0.3 42,727 + -0.3 42,728 - -0.3 42,728 - +1.3 42,728 - +0.6 42,728 - -0.3 42,728 - -0.3 42,728 - -1.3 42,728 - -0.3 42,728 - +0.4 42,728 - -0.9 42,728 - +0.4 42,728 - -1.3 42,728 - -0.3 42,728 - -0.3 42,838 + Rru_B0042 0.11 +0.5 42,839 - Rru_B0042 0.11 -0.5 42,839 - Rru_B0042 0.11 +1.7 42,839 - Rru_B0042 0.11 -0.3 42,928 + Rru_B0042 0.21 -0.0 42,928 + Rru_B0042 0.21 +0.8 42,928 + Rru_B0042 0.21 +0.5 42,928 + Rru_B0042 0.21 +0.1 42,928 + Rru_B0042 0.21 +0.4 42,928 + Rru_B0042 0.21 -1.3 42,929 - Rru_B0042 0.22 -0.8 42,929 - Rru_B0042 0.22 -1.3 42,929 - Rru_B0042 0.22 -0.1 42,929 - Rru_B0042 0.22 -0.0 43,409 + Rru_B0042 0.78 -0.1 43,409 + Rru_B0042 0.78 -0.3 43,409 + Rru_B0042 0.78 -0.3 43,410 - Rru_B0042 0.78 -0.3 43,541 + +0.7 43,542 - +1.5
Or see this region's nucleotide sequence