Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0033

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
31,539	+		Rru_B0031	0.70	+0.8
31,539	+		Rru_B0031	0.70	-0.3
31,539	+		Rru_B0031	0.70	+0.5
31,539	+		Rru_B0031	0.70	-0.3
31,540	-		Rru_B0031	0.70	-0.3
31,540	-		Rru_B0031	0.70	+0.4
31,540	-		Rru_B0031	0.70	-0.3
31,540	-		Rru_B0031	0.70	-0.3
31,548	+		Rru_B0031	0.71	-0.0
31,548	+		Rru_B0031	0.71	-0.3
31,548	+		Rru_B0031	0.71	-0.3
31,548	+		Rru_B0031	0.71	+0.3
31,548	+		Rru_B0031	0.71	+1.0
31,549	-		Rru_B0031	0.71	+0.3
31,549	-		Rru_B0031	0.71	-0.3
31,549	-		Rru_B0031	0.71	-0.3
31,549	-		Rru_B0031	0.71	+0.5
31,626	+		Rru_B0031	0.76	+0.3
31,626	+		Rru_B0031	0.76	+0.2
31,626	+		Rru_B0031	0.76	+0.6
31,626	+		Rru_B0031	0.76	-0.3
31,626	+		Rru_B0031	0.76	+0.1
31,626	+		Rru_B0031	0.76	-1.3
31,626	+		Rru_B0031	0.76	+0.2
31,627	-		Rru_B0031	0.76	+0.7
31,627	-		Rru_B0031	0.76	+0.4
31,627	-		Rru_B0031	0.76	-0.3
31,627	-		Rru_B0031	0.76	-0.3
31,627	-		Rru_B0031	0.76	-1.3
31,627	-		Rru_B0031	0.76	+1.0
31,627	-		Rru_B0031	0.76	+0.6
31,627	-		Rru_B0031	0.76	+0.9
31,627	-		Rru_B0031	0.76	-0.3
31,627	-		Rru_B0031	0.76	-1.3
31,627	-		Rru_B0031	0.76	+0.7
31,627	-		Rru_B0031	0.76	-0.3
31,627	-		Rru_B0031	0.76	+0.7
31,854	+				-1.0
31,938	+				+1.3
31,939	-				-0.3
31,951	+				-0.3
31,951	+				-0.3
31,951	+				+1.2
31,951	+				+1.0
31,951	+				+1.5
31,952	-				+0.5
31,952	-				+0.2
31,952	-				+0.9
31,953	+				-0.3
31,954	-				-1.9
31,971	+				+0.9
31,971	+				-0.3
31,971	+				+0.6
31,971	+				-1.3
31,971	+				+1.5
31,971	+				+1.3
31,971	+				+1.2
31,972	-				-0.3
31,972	-				-0.3
31,972	-				+0.5
31,972	-				+0.5
31,972	-				+1.0
31,972	-				-1.3
32,013	+				+1.2
32,013	+				-0.3
32,014	-				-0.3
32,029	+				+2.1
32,030	-				-2.6
32,030	-				-0.3
32,058	+				+0.5
32,059	-				-1.6
32,059	-				+1.0
32,128	+		Rru_B0032	0.17	-0.3
32,129	-		Rru_B0032	0.17	+1.0
32,129	-		Rru_B0032	0.17	-0.3
32,180	+		Rru_B0032	0.34	+0.4
32,180	+		Rru_B0032	0.34	-0.2
32,180	+		Rru_B0032	0.34	-0.3
32,180	+		Rru_B0032	0.34	+1.0
32,180	+		Rru_B0032	0.34	+1.6
32,181	-		Rru_B0032	0.35	+0.5
32,181	-		Rru_B0032	0.35	-0.1
32,181	-		Rru_B0032	0.35	+0.7
32,181	-		Rru_B0032	0.35	-0.3
32,239	+		Rru_B0032	0.54	-0.3
32,239	+		Rru_B0032	0.54	-1.3
32,240	-		Rru_B0032	0.54	-0.3
32,381	+				-0.3
32,381	+				-0.3
32,381	+				+0.7
32,381	+				+1.4
32,381	+				-0.3
32,382	-				-0.3
32,417	+				+0.4
32,418	-				-0.3
32,492	+				+0.7
32,502	-				-0.3
32,711	-		Rru_B0033	0.32	-0.3
32,711	-		Rru_B0033	0.32	+1.0
32,764	+		Rru_B0033	0.40	+0.3
32,819	+		Rru_B0033	0.48	-0.3
32,819	+		Rru_B0033	0.48	-0.3
32,820	-		Rru_B0033	0.48	-0.3
32,820	-		Rru_B0033	0.48	+0.8
32,828	+		Rru_B0033	0.49	-1.3
32,828	+		Rru_B0033	0.49	-0.3
32,828	+		Rru_B0033	0.49	+0.9
32,829	-		Rru_B0033	0.49	+0.6
32,830	+		Rru_B0033	0.49	-1.3
32,831	-		Rru_B0033	0.49	+0.5
32,831	-		Rru_B0033	0.49	-1.3
32,831	-		Rru_B0033	0.49	+0.8
32,831	-		Rru_B0033	0.49	-0.3
32,831	-		Rru_B0033	0.49	-1.3
32,851	+		Rru_B0033	0.52	+0.3
32,851	+		Rru_B0033	0.52	-0.3
32,851	+		Rru_B0033	0.52	+1.0
32,852	-		Rru_B0033	0.52	+1.0
32,852	-		Rru_B0033	0.52	+0.9
32,867	+		Rru_B0033	0.55	-2.0
32,867	+		Rru_B0033	0.55	-0.3
32,868	-		Rru_B0033	0.55	-0.3
32,868	-		Rru_B0033	0.55	-0.3
32,869	+		Rru_B0033	0.55	-0.3
32,869	+		Rru_B0033	0.55	+0.4
32,869	+		Rru_B0033	0.55	+0.9
32,869	+		Rru_B0033	0.55	+1.4
32,869	+		Rru_B0033	0.55	+0.3
32,870	-		Rru_B0033	0.55	-0.3
32,870	-		Rru_B0033	0.55	-0.3
32,870	-		Rru_B0033	0.55	+1.6
32,870	-		Rru_B0033	0.55	-0.4
32,881	+		Rru_B0033	0.56	-0.3
32,881	+		Rru_B0033	0.56	+0.6
32,881	+		Rru_B0033	0.56	+1.0
32,881	+		Rru_B0033	0.56	+0.3
32,881	+		Rru_B0033	0.56	-0.3
32,881	+		Rru_B0033	0.56	+0.5
32,882	-		Rru_B0033	0.57	-0.3
32,929	+		Rru_B0033	0.63	-1.9
32,929	+		Rru_B0033	0.63	+1.8
32,929	+		Rru_B0033	0.63	-0.4
32,930	-		Rru_B0033	0.63	+1.0
32,930	-		Rru_B0033	0.63	+1.8
32,930	-		Rru_B0033	0.63	+0.3
32,930	-		Rru_B0033	0.63	-0.3
32,930	-		Rru_B0033	0.63	+1.0
33,028	+		Rru_B0033	0.77	+0.5
33,029	-		Rru_B0033	0.77	+0.5
33,029	-		Rru_B0033	0.77	-0.3
33,029	-		Rru_B0033	0.77	+2.3
33,029	-		Rru_B0033	0.77	+0.1
33,029	-		Rru_B0033	0.77	-0.3
33,201	-				+1.5
33,247	+				-0.3
33,248	-				-0.3
33,271	+				+1.7
33,273	+				-0.3
33,275	+				-0.3
33,275	+				+1.7
33,275	+				-0.3
33,276	-				-1.3
33,276	-				+1.0
33,276	-				-0.3
33,278	+				-0.3
33,285	+				+0.9
33,286	-				-0.3
33,287	+				+2.4
33,288	-				+0.5
33,568	-				-0.3
33,672	+		Rru_B0035	0.36	-0.3
33,672	+		Rru_B0035	0.36	-1.9
33,672	+		Rru_B0035	0.36	-0.3
33,672	+		Rru_B0035	0.36	-0.3
33,673	-		Rru_B0035	0.37	-0.3
33,673	-		Rru_B0035	0.37	-1.3
33,674	+		Rru_B0035	0.37	-0.3
33,674	+		Rru_B0035	0.37	+0.5
33,674	+		Rru_B0035	0.37	-1.3
33,674	+		Rru_B0035	0.37	-0.3
33,674	+		Rru_B0035	0.37	+0.2
33,674	+		Rru_B0035	0.37	-0.3
33,675	-		Rru_B0035	0.37	+0.6
33,675	-		Rru_B0035	0.37	+0.8
33,675	-		Rru_B0035	0.37	+0.2
33,675	-		Rru_B0035	0.37	-0.3
33,675	-		Rru_B0035	0.37	-1.3
33,675	-		Rru_B0035	0.37	-0.3
33,675	-		Rru_B0035	0.37	-0.3
33,675	-		Rru_B0035	0.37	-1.9
33,675	-		Rru_B0035	0.37	+0.7
33,675	-		Rru_B0035	0.37	+0.9
33,675	-		Rru_B0035	0.37	-1.3
33,708	+		Rru_B0035	0.46	+0.7
33,708	+		Rru_B0035	0.46	-2.3
33,708	+		Rru_B0035	0.46	+1.1
33,709	-		Rru_B0035	0.46	-0.0
33,709	-		Rru_B0035	0.46	+1.1
33,709	-		Rru_B0035	0.46	-1.3
33,709	-		Rru_B0035	0.46	-0.3
33,714	+		Rru_B0035	0.47	-0.0
33,714	+		Rru_B0035	0.47	-0.3
33,714	+		Rru_B0035	0.47	-0.3
33,715	-		Rru_B0035	0.48	+0.6
33,715	-		Rru_B0035	0.48	-0.3
33,715	-		Rru_B0035	0.48	-0.3
33,715	-		Rru_B0035	0.48	+0.2
33,863	+		Rru_B0035	0.86	-0.1
33,863	+		Rru_B0035	0.86	-0.3
33,863	+		Rru_B0035	0.86	+0.7
33,863	+		Rru_B0035	0.86	-1.3
33,863	+		Rru_B0035	0.86	-0.3
33,864	-		Rru_B0035	0.86	-0.3
33,864	-		Rru_B0035	0.86	+1.0
33,864	-		Rru_B0035	0.86	-0.3
33,928	+				-0.3
33,928	+				+0.7
33,928	+				+1.3
33,929	-				-0.3
33,929	-				+0.8
33,930	+				-0.3
33,930	+				+0.4
33,930	+				-0.3
33,931	-				+0.6
33,931	-				+0.7
33,931	-				+0.0
34,001	+				+1.1
34,001	+				+0.9
34,001	+				+1.0
34,001	+				-1.3
34,001	+				-0.3
34,002	-				+0.8
34,002	-				-0.0
34,002	-				-1.3
34,002	-				+0.1
34,002	-				+0.6
34,002	-				-0.5
34,092	+		Rru_B0036	0.13	+1.2
34,092	+		Rru_B0036	0.13	-0.3
34,092	+		Rru_B0036	0.13	+0.2
34,093	-		Rru_B0036	0.13	-0.3
34,121	+		Rru_B0036	0.15	+0.6
34,121	+		Rru_B0036	0.15	+1.0
34,121	+		Rru_B0036	0.15	-0.3