Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02045 and BWI76_RS02050 are separated by 103 nucleotides BWI76_RS02050 and BWI76_RS02055 overlap by 8 nucleotides
BWI76_RS02045: BWI76_RS02045 - LysR family transcriptional regulator, at 421,398 to 422,294
_RS02045
BWI76_RS02050: BWI76_RS02050 - CidA/LrgA family protein, at 422,398 to 422,808
_RS02050
BWI76_RS02055: BWI76_RS02055 - murein hydrolase effector protein LrgB, at 422,801 to 423,490
_RS02055
Position (kb) 422
423 Strain fitness (log2 ratio) -2
-1
0
1
2 at 421.403 kb on - strand at 421.438 kb on + strand at 421.477 kb on - strand at 421.478 kb on - strand at 421.526 kb on - strand, within BWI76_RS02045 at 421.540 kb on - strand, within BWI76_RS02045 at 421.626 kb on - strand, within BWI76_RS02045 at 421.950 kb on + strand, within BWI76_RS02045 at 422.000 kb on + strand, within BWI76_RS02045 at 422.148 kb on + strand, within BWI76_RS02045 at 422.161 kb on - strand, within BWI76_RS02045 at 422.308 kb on + strand at 422.316 kb on - strand at 422.316 kb on - strand at 422.355 kb on + strand at 422.355 kb on + strand at 422.355 kb on + strand at 422.355 kb on + strand at 422.355 kb on + strand at 422.355 kb on + strand at 422.355 kb on + strand at 422.356 kb on + strand at 422.356 kb on + strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.368 kb on - strand at 422.415 kb on - strand at 422.418 kb on + strand at 422.429 kb on + strand at 422.429 kb on + strand at 422.437 kb on - strand at 422.461 kb on + strand, within BWI76_RS02050 at 422.496 kb on + strand, within BWI76_RS02050 at 422.782 kb on + strand at 422.792 kb on + strand at 422.792 kb on + strand at 422.792 kb on + strand at 422.816 kb on - strand at 422.978 kb on - strand, within BWI76_RS02055 at 423.081 kb on + strand, within BWI76_RS02055 at 423.182 kb on + strand, within BWI76_RS02055 at 423.271 kb on - strand, within BWI76_RS02055 at 423.339 kb on - strand, within BWI76_RS02055 at 423.352 kb on - strand, within BWI76_RS02055 at 423.384 kb on + strand, within BWI76_RS02055 at 423.384 kb on + strand, within BWI76_RS02055 at 423.392 kb on - strand, within BWI76_RS02055 at 423.396 kb on + strand, within BWI76_RS02055 at 423.467 kb on + strand at 423.467 kb on + strand at 423.474 kb on + strand at 423.474 kb on + strand at 423.484 kb on + strand at 423.484 kb on + strand at 423.484 kb on + strand at 423.484 kb on + strand at 423.484 kb on + strand at 423.484 kb on + strand at 423.487 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.493 kb on + strand at 423.500 kb on + strand at 423.503 kb on + strand at 423.511 kb on - strand at 423.522 kb on + strand at 423.525 kb on - strand at 423.525 kb on - strand at 423.525 kb on - strand at 423.525 kb on - strand at 423.530 kb on - strand at 423.559 kb on + strand at 423.559 kb on + strand at 423.559 kb on + strand at 423.559 kb on + strand at 423.559 kb on + strand at 423.559 kb on + strand at 423.559 kb on + strand at 423.567 kb on - strand at 423.567 kb on - strand at 423.567 kb on - strand at 423.567 kb on - strand at 423.621 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 421,403 - -0.1 421,438 + -0.1 421,477 - +0.0 421,478 - +2.3 421,526 - BWI76_RS02045 0.14 -0.9 421,540 - BWI76_RS02045 0.16 -0.7 421,626 - BWI76_RS02045 0.25 +0.4 421,950 + BWI76_RS02045 0.62 -0.2 422,000 + BWI76_RS02045 0.67 -0.1 422,148 + BWI76_RS02045 0.84 -0.0 422,161 - BWI76_RS02045 0.85 -0.9 422,308 + +0.1 422,316 - +0.7 422,316 - +0.4 422,355 + -0.1 422,355 + +0.4 422,355 + -0.3 422,355 + +0.1 422,355 + -1.7 422,355 + -0.4 422,355 + -0.0 422,356 + -0.8 422,356 + -0.2 422,363 - +0.1 422,363 - +0.1 422,363 - +0.5 422,363 - -0.1 422,363 - -0.3 422,363 - +0.5 422,363 - +0.1 422,363 - -0.3 422,368 - +0.7 422,415 - +0.0 422,418 + +0.9 422,429 + -0.4 422,429 + -0.1 422,437 - -1.5 422,461 + BWI76_RS02050 0.15 -0.3 422,496 + BWI76_RS02050 0.24 -1.4 422,782 + +0.6 422,792 + +1.7 422,792 + -0.9 422,792 + -1.1 422,816 - -0.7 422,978 - BWI76_RS02055 0.26 -0.2 423,081 + BWI76_RS02055 0.41 +0.2 423,182 + BWI76_RS02055 0.55 -0.5 423,271 - BWI76_RS02055 0.68 +0.2 423,339 - BWI76_RS02055 0.78 -1.3 423,352 - BWI76_RS02055 0.80 +0.4 423,384 + BWI76_RS02055 0.84 -0.3 423,384 + BWI76_RS02055 0.84 -1.4 423,392 - BWI76_RS02055 0.86 -1.1 423,396 + BWI76_RS02055 0.86 -0.0 423,467 + +0.2 423,467 + +0.1 423,474 + -2.4 423,474 + -0.4 423,484 + -0.3 423,484 + -0.4 423,484 + +1.2 423,484 + +0.7 423,484 + +0.8 423,484 + -0.9 423,487 - +0.2 423,492 - -0.0 423,492 - +0.1 423,492 - -0.7 423,492 - -0.3 423,492 - +0.6 423,492 - +0.4 423,492 - -0.5 423,492 - -0.3 423,492 - -0.3 423,492 - +0.6 423,492 - -0.1 423,492 - -1.3 423,493 + -2.0 423,500 + -0.2 423,503 + -0.4 423,511 - -0.8 423,522 + +0.1 423,525 - -0.6 423,525 - -2.3 423,525 - +1.0 423,525 - +0.1 423,530 - -0.0 423,559 + +0.1 423,559 + +0.3 423,559 + -1.0 423,559 + -0.2 423,559 + -1.6 423,559 + +0.1 423,559 + -0.4 423,567 - +1.0 423,567 - -0.9 423,567 - -0.3 423,567 - -0.2 423,621 + +2.0
Or see this region's nucleotide sequence