Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14815

Experiment: LB 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14810 and AO356_14815 are separated by 211 nucleotidesAO356_14815 and AO356_14820 are separated by 81 nucleotidesAO356_14820 and AO356_14825 are separated by 98 nucleotides AO356_14810: AO356_14810 - hypothetical protein, at 3,348,102 to 3,350,027 _14810 AO356_14815: AO356_14815 - Cro/Cl family transcriptional regulator, at 3,350,239 to 3,353,538 _14815 AO356_14820: AO356_14820 - Isochorismatase, at 3,353,620 to 3,354,174 _14820 AO356_14825: AO356_14825 - AraC family transcriptional regulator, at 3,354,273 to 3,355,268 _14825 Position (kb) 3350 3351 3352 3353 3354Strain fitness (log2 ratio) -2 -1 0 1at 3349.390 kb on + strand, within AO356_14810at 3349.391 kb on - strand, within AO356_14810at 3349.459 kb on + strand, within AO356_14810at 3349.459 kb on + strand, within AO356_14810at 3349.459 kb on + strand, within AO356_14810at 3349.459 kb on + strand, within AO356_14810at 3349.460 kb on - strand, within AO356_14810at 3349.460 kb on - strand, within AO356_14810at 3349.460 kb on - strand, within AO356_14810at 3349.460 kb on - strand, within AO356_14810at 3349.460 kb on - strand, within AO356_14810at 3349.651 kb on + strand, within AO356_14810at 3349.652 kb on - strand, within AO356_14810at 3349.652 kb on - strand, within AO356_14810at 3349.729 kb on + strand, within AO356_14810at 3349.730 kb on - strand, within AO356_14810at 3349.730 kb on - strand, within AO356_14810at 3349.730 kb on - strand, within AO356_14810at 3349.760 kb on + strand, within AO356_14810at 3349.760 kb on + strand, within AO356_14810at 3349.760 kb on + strand, within AO356_14810at 3349.760 kb on + strand, within AO356_14810at 3349.761 kb on - strand, within AO356_14810at 3349.761 kb on - strand, within AO356_14810at 3349.761 kb on - strand, within AO356_14810at 3349.855 kb on + strandat 3349.856 kb on - strandat 3349.856 kb on - strandat 3349.856 kb on - strandat 3349.856 kb on - strandat 3349.965 kb on + strandat 3349.965 kb on + strandat 3349.966 kb on - strandat 3349.966 kb on - strandat 3350.053 kb on + strandat 3350.053 kb on + strandat 3350.053 kb on + strandat 3350.053 kb on + strandat 3350.053 kb on + strandat 3350.054 kb on - strandat 3350.054 kb on - strandat 3350.054 kb on - strandat 3350.054 kb on - strandat 3350.102 kb on - strandat 3350.134 kb on - strandat 3350.192 kb on + strandat 3350.192 kb on + strandat 3350.192 kb on + strandat 3350.192 kb on + strandat 3350.192 kb on + strandat 3350.192 kb on + strandat 3350.192 kb on + strandat 3350.193 kb on - strandat 3350.193 kb on - strandat 3350.193 kb on - strandat 3350.193 kb on - strandat 3350.193 kb on - strandat 3350.193 kb on - strandat 3350.450 kb on - strandat 3350.617 kb on + strand, within AO356_14815at 3350.618 kb on - strand, within AO356_14815at 3350.846 kb on + strand, within AO356_14815at 3350.846 kb on + strand, within AO356_14815at 3350.847 kb on - strand, within AO356_14815at 3350.847 kb on - strand, within AO356_14815at 3350.847 kb on - strand, within AO356_14815at 3350.950 kb on + strand, within AO356_14815at 3350.950 kb on + strand, within AO356_14815at 3350.950 kb on + strand, within AO356_14815at 3350.950 kb on + strand, within AO356_14815at 3350.950 kb on + strand, within AO356_14815at 3350.950 kb on + strand, within AO356_14815at 3350.950 kb on + strand, within AO356_14815at 3350.950 kb on + strand, within AO356_14815at 3350.950 kb on + strand, within AO356_14815at 3350.951 kb on - strand, within AO356_14815at 3350.951 kb on - strand, within AO356_14815at 3350.951 kb on - strand, within AO356_14815at 3350.951 kb on - strand, within AO356_14815at 3350.951 kb on - strand, within AO356_14815at 3350.951 kb on - strand, within AO356_14815at 3350.951 kb on - strand, within AO356_14815at 3350.951 kb on - strand, within AO356_14815at 3350.951 kb on - strand, within AO356_14815at 3350.951 kb on - strand, within AO356_14815at 3350.951 kb on - strand, within AO356_14815at 3350.951 kb on - strand, within AO356_14815at 3351.025 kb on + strand, within AO356_14815at 3351.026 kb on - strand, within AO356_14815at 3351.157 kb on + strand, within AO356_14815at 3351.157 kb on + strand, within AO356_14815at 3351.157 kb on + strand, within AO356_14815at 3351.157 kb on + strand, within AO356_14815at 3351.158 kb on - strand, within AO356_14815at 3351.158 kb on - strand, within AO356_14815at 3351.573 kb on + strand, within AO356_14815at 3351.573 kb on + strand, within AO356_14815at 3351.574 kb on - strand, within AO356_14815at 3351.574 kb on - strand, within AO356_14815at 3351.574 kb on - strand, within AO356_14815at 3351.574 kb on - strand, within AO356_14815at 3351.574 kb on - strand, within AO356_14815at 3351.574 kb on - strand, within AO356_14815at 3351.582 kb on + strand, within AO356_14815at 3351.582 kb on + strand, within AO356_14815at 3351.582 kb on + strand, within AO356_14815at 3351.582 kb on + strand, within AO356_14815at 3351.582 kb on + strand, within AO356_14815at 3351.583 kb on - strand, within AO356_14815at 3351.583 kb on - strand, within AO356_14815at 3351.583 kb on - strand, within AO356_14815at 3351.873 kb on + strand, within AO356_14815at 3351.874 kb on - strand, within AO356_14815at 3351.935 kb on - strand, within AO356_14815at 3351.935 kb on - strand, within AO356_14815at 3352.000 kb on + strand, within AO356_14815at 3352.000 kb on + strand, within AO356_14815at 3352.000 kb on + strand, within AO356_14815at 3352.000 kb on + strand, within AO356_14815at 3352.001 kb on - strand, within AO356_14815at 3352.001 kb on - strand, within AO356_14815at 3352.057 kb on + strand, within AO356_14815at 3352.057 kb on + strand, within AO356_14815at 3352.057 kb on + strand, within AO356_14815at 3352.057 kb on + strand, within AO356_14815at 3352.057 kb on + strand, within AO356_14815at 3352.057 kb on + strand, within AO356_14815at 3352.057 kb on + strand, within AO356_14815at 3352.058 kb on - strand, within AO356_14815at 3352.058 kb on - strand, within AO356_14815at 3352.058 kb on - strand, within AO356_14815at 3352.093 kb on + strand, within AO356_14815at 3352.093 kb on + strand, within AO356_14815at 3352.093 kb on + strand, within AO356_14815at 3352.151 kb on - strand, within AO356_14815at 3352.174 kb on + strand, within AO356_14815at 3352.175 kb on - strand, within AO356_14815at 3352.470 kb on + strand, within AO356_14815at 3352.471 kb on - strand, within AO356_14815at 3352.581 kb on + strand, within AO356_14815at 3352.581 kb on + strand, within AO356_14815at 3352.581 kb on + strand, within AO356_14815at 3352.582 kb on - strand, within AO356_14815at 3352.582 kb on - strand, within AO356_14815at 3352.582 kb on - strand, within AO356_14815at 3352.585 kb on + strand, within AO356_14815at 3352.585 kb on + strand, within AO356_14815at 3352.586 kb on - strand, within AO356_14815at 3352.586 kb on - strand, within AO356_14815at 3352.586 kb on - strand, within AO356_14815at 3352.586 kb on - strand, within AO356_14815at 3352.603 kb on + strand, within AO356_14815at 3352.604 kb on - strand, within AO356_14815at 3352.705 kb on + strand, within AO356_14815at 3352.705 kb on + strand, within AO356_14815at 3352.705 kb on + strand, within AO356_14815at 3352.705 kb on + strand, within AO356_14815at 3352.705 kb on + strand, within AO356_14815at 3352.705 kb on + strand, within AO356_14815at 3352.706 kb on - strand, within AO356_14815at 3352.708 kb on + strand, within AO356_14815at 3352.708 kb on + strand, within AO356_14815at 3352.709 kb on - strand, within AO356_14815at 3352.709 kb on - strand, within AO356_14815at 3352.709 kb on - strand, within AO356_14815at 3352.709 kb on - strand, within AO356_14815at 3352.709 kb on - strand, within AO356_14815at 3352.736 kb on - strand, within AO356_14815at 3352.758 kb on - strand, within AO356_14815at 3352.831 kb on + strand, within AO356_14815at 3352.831 kb on + strand, within AO356_14815at 3352.832 kb on - strand, within AO356_14815at 3353.149 kb on + strand, within AO356_14815at 3353.149 kb on + strand, within AO356_14815at 3353.149 kb on + strand, within AO356_14815at 3353.150 kb on - strand, within AO356_14815at 3353.167 kb on + strand, within AO356_14815at 3353.168 kb on - strand, within AO356_14815at 3353.168 kb on - strand, within AO356_14815at 3353.328 kb on + strandat 3353.329 kb on - strandat 3353.329 kb on - strandat 3353.604 kb on + strandat 3353.605 kb on - strandat 3353.621 kb on + strandat 3353.622 kb on - strandat 3353.622 kb on - strandat 3353.667 kb on - strandat 3353.950 kb on + strand, within AO356_14820at 3353.951 kb on - strand, within AO356_14820at 3354.131 kb on + strandat 3354.131 kb on + strandat 3354.131 kb on + strandat 3354.131 kb on + strandat 3354.131 kb on + strandat 3354.131 kb on + strandat 3354.132 kb on - strandat 3354.132 kb on - strandat 3354.132 kb on - strandat 3354.132 kb on - strandat 3354.152 kb on - strandat 3354.199 kb on + strandat 3354.210 kb on + strandat 3354.210 kb on + strandat 3354.253 kb on + strandat 3354.253 kb on + strandat 3354.253 kb on + strandat 3354.253 kb on + strandat 3354.254 kb on - strandat 3354.254 kb on - strandat 3354.254 kb on - strandat 3354.254 kb on - strandat 3354.315 kb on + strandat 3354.316 kb on - strandat 3354.316 kb on - strandat 3354.316 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C
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3,349,390 + AO356_14810 0.67 +0.7
3,349,391 - AO356_14810 0.67 -0.7
3,349,459 + AO356_14810 0.70 +0.3
3,349,459 + AO356_14810 0.70 +0.1
3,349,459 + AO356_14810 0.70 +0.7
3,349,459 + AO356_14810 0.70 +1.0
3,349,460 - AO356_14810 0.71 +0.3
3,349,460 - AO356_14810 0.71 +0.6
3,349,460 - AO356_14810 0.71 +0.9
3,349,460 - AO356_14810 0.71 +0.2
3,349,460 - AO356_14810 0.71 -1.6
3,349,651 + AO356_14810 0.80 -0.7
3,349,652 - AO356_14810 0.80 +0.1
3,349,652 - AO356_14810 0.80 -1.1
3,349,729 + AO356_14810 0.84 +0.2
3,349,730 - AO356_14810 0.85 -1.2
3,349,730 - AO356_14810 0.85 -0.1
3,349,730 - AO356_14810 0.85 +0.1
3,349,760 + AO356_14810 0.86 -0.4
3,349,760 + AO356_14810 0.86 +1.6
3,349,760 + AO356_14810 0.86 +0.4
3,349,760 + AO356_14810 0.86 +0.6
3,349,761 - AO356_14810 0.86 +0.1
3,349,761 - AO356_14810 0.86 -0.4
3,349,761 - AO356_14810 0.86 -0.2
3,349,855 + -0.0
3,349,856 - -2.2
3,349,856 - +0.2
3,349,856 - -0.2
3,349,856 - +0.0
3,349,965 + -0.1
3,349,965 + -0.4
3,349,966 - +0.3
3,349,966 - +0.6
3,350,053 + -0.5
3,350,053 + +0.9
3,350,053 + -2.1
3,350,053 + -0.3
3,350,053 + +0.3
3,350,054 - -0.1
3,350,054 - -0.1
3,350,054 - +1.1
3,350,054 - -0.2
3,350,102 - +0.1
3,350,134 - +0.3
3,350,192 + -0.9
3,350,192 + +0.5
3,350,192 + +0.1
3,350,192 + +0.8
3,350,192 + +0.6
3,350,192 + -0.2
3,350,192 + +0.7
3,350,193 - -0.5
3,350,193 - -1.2
3,350,193 - +0.7
3,350,193 - +0.5
3,350,193 - +1.3
3,350,193 - -1.0
3,350,450 - +0.0
3,350,617 + AO356_14815 0.11 -0.1
3,350,618 - AO356_14815 0.11 -0.4
3,350,846 + AO356_14815 0.18 +0.0
3,350,846 + AO356_14815 0.18 +1.3
3,350,847 - AO356_14815 0.18 -0.8
3,350,847 - AO356_14815 0.18 +0.9
3,350,847 - AO356_14815 0.18 -0.6
3,350,950 + AO356_14815 0.22 +0.4
3,350,950 + AO356_14815 0.22 -0.0
3,350,950 + AO356_14815 0.22 +0.4
3,350,950 + AO356_14815 0.22 -0.1
3,350,950 + AO356_14815 0.22 +0.4
3,350,950 + AO356_14815 0.22 +0.4
3,350,950 + AO356_14815 0.22 +1.5
3,350,950 + AO356_14815 0.22 +0.2
3,350,950 + AO356_14815 0.22 +0.3
3,350,951 - AO356_14815 0.22 +0.7
3,350,951 - AO356_14815 0.22 -0.7
3,350,951 - AO356_14815 0.22 +0.6
3,350,951 - AO356_14815 0.22 +0.1
3,350,951 - AO356_14815 0.22 +0.2
3,350,951 - AO356_14815 0.22 -0.1
3,350,951 - AO356_14815 0.22 +0.4
3,350,951 - AO356_14815 0.22 +0.9
3,350,951 - AO356_14815 0.22 +1.1
3,350,951 - AO356_14815 0.22 +0.5
3,350,951 - AO356_14815 0.22 -0.0
3,350,951 - AO356_14815 0.22 +1.0
3,351,025 + AO356_14815 0.24 +0.3
3,351,026 - AO356_14815 0.24 +0.1
3,351,157 + AO356_14815 0.28 +0.1
3,351,157 + AO356_14815 0.28 +0.7
3,351,157 + AO356_14815 0.28 -0.1
3,351,157 + AO356_14815 0.28 +0.0
3,351,158 - AO356_14815 0.28 +0.1
3,351,158 - AO356_14815 0.28 +0.0
3,351,573 + AO356_14815 0.40 +0.3
3,351,573 + AO356_14815 0.40 +0.8
3,351,574 - AO356_14815 0.40 -0.2
3,351,574 - AO356_14815 0.40 -0.7
3,351,574 - AO356_14815 0.40 +0.5
3,351,574 - AO356_14815 0.40 -0.2
3,351,574 - AO356_14815 0.40 +0.1
3,351,574 - AO356_14815 0.40 +0.4
3,351,582 + AO356_14815 0.41 +0.7
3,351,582 + AO356_14815 0.41 -0.3
3,351,582 + AO356_14815 0.41 +1.1
3,351,582 + AO356_14815 0.41 +0.4
3,351,582 + AO356_14815 0.41 -0.5
3,351,583 - AO356_14815 0.41 +0.6
3,351,583 - AO356_14815 0.41 -1.7
3,351,583 - AO356_14815 0.41 +0.5
3,351,873 + AO356_14815 0.50 +0.3
3,351,874 - AO356_14815 0.50 +0.4
3,351,935 - AO356_14815 0.51 -0.7
3,351,935 - AO356_14815 0.51 +0.9
3,352,000 + AO356_14815 0.53 -1.2
3,352,000 + AO356_14815 0.53 +0.0
3,352,000 + AO356_14815 0.53 +1.1
3,352,000 + AO356_14815 0.53 +0.3
3,352,001 - AO356_14815 0.53 -0.4
3,352,001 - AO356_14815 0.53 +0.3
3,352,057 + AO356_14815 0.55 +1.1
3,352,057 + AO356_14815 0.55 +0.6
3,352,057 + AO356_14815 0.55 +0.2
3,352,057 + AO356_14815 0.55 -0.0
3,352,057 + AO356_14815 0.55 +0.2
3,352,057 + AO356_14815 0.55 +0.4
3,352,057 + AO356_14815 0.55 +0.4
3,352,058 - AO356_14815 0.55 +0.1
3,352,058 - AO356_14815 0.55 -0.2
3,352,058 - AO356_14815 0.55 +0.9
3,352,093 + AO356_14815 0.56 +0.1
3,352,093 + AO356_14815 0.56 -0.1
3,352,093 + AO356_14815 0.56 -0.5
3,352,151 - AO356_14815 0.58 +0.1
3,352,174 + AO356_14815 0.59 +0.2
3,352,175 - AO356_14815 0.59 +0.1
3,352,470 + AO356_14815 0.68 -1.0
3,352,471 - AO356_14815 0.68 -0.5
3,352,581 + AO356_14815 0.71 +0.6
3,352,581 + AO356_14815 0.71 -0.2
3,352,581 + AO356_14815 0.71 -1.4
3,352,582 - AO356_14815 0.71 +0.7
3,352,582 - AO356_14815 0.71 +0.2
3,352,582 - AO356_14815 0.71 +0.3
3,352,585 + AO356_14815 0.71 +0.4
3,352,585 + AO356_14815 0.71 +0.3
3,352,586 - AO356_14815 0.71 +0.1
3,352,586 - AO356_14815 0.71 +0.2
3,352,586 - AO356_14815 0.71 +0.3
3,352,586 - AO356_14815 0.71 -0.9
3,352,603 + AO356_14815 0.72 -0.3
3,352,604 - AO356_14815 0.72 -0.1
3,352,705 + AO356_14815 0.75 +0.6
3,352,705 + AO356_14815 0.75 +0.3
3,352,705 + AO356_14815 0.75 +1.4
3,352,705 + AO356_14815 0.75 -0.5
3,352,705 + AO356_14815 0.75 +0.9
3,352,705 + AO356_14815 0.75 +0.1
3,352,706 - AO356_14815 0.75 +0.5
3,352,708 + AO356_14815 0.75 +0.0
3,352,708 + AO356_14815 0.75 +0.0
3,352,709 - AO356_14815 0.75 +0.2
3,352,709 - AO356_14815 0.75 +0.0
3,352,709 - AO356_14815 0.75 +0.5
3,352,709 - AO356_14815 0.75 -0.2
3,352,709 - AO356_14815 0.75 +0.1
3,352,736 - AO356_14815 0.76 +0.5
3,352,758 - AO356_14815 0.76 -0.1
3,352,831 + AO356_14815 0.79 +0.1
3,352,831 + AO356_14815 0.79 +0.7
3,352,832 - AO356_14815 0.79 +1.0
3,353,149 + AO356_14815 0.88 +0.7
3,353,149 + AO356_14815 0.88 +0.5
3,353,149 + AO356_14815 0.88 +0.6
3,353,150 - AO356_14815 0.88 -0.2
3,353,167 + AO356_14815 0.89 +0.3
3,353,168 - AO356_14815 0.89 -0.5
3,353,168 - AO356_14815 0.89 +0.4
3,353,328 + +0.7
3,353,329 - +0.2
3,353,329 - +0.3
3,353,604 + +0.1
3,353,605 - +0.5
3,353,621 + +0.4
3,353,622 - +1.0
3,353,622 - +0.8
3,353,667 - +0.4
3,353,950 + AO356_14820 0.59 +0.0
3,353,951 - AO356_14820 0.60 +0.1
3,354,131 + +0.1
3,354,131 + -0.5
3,354,131 + -0.4
3,354,131 + +0.2
3,354,131 + -0.3
3,354,131 + -0.1
3,354,132 - -0.0
3,354,132 - -0.7
3,354,132 - +0.2
3,354,132 - -0.1
3,354,152 - -0.0
3,354,199 + +1.0
3,354,210 + +1.3
3,354,210 + -0.1
3,354,253 + -0.3
3,354,253 + +0.5
3,354,253 + +0.2
3,354,253 + -0.1
3,354,254 - +0.8
3,354,254 - +1.5
3,354,254 - +0.3
3,354,254 - +0.3
3,354,315 + -0.4
3,354,316 - -0.0
3,354,316 - -2.1
3,354,316 - -0.6

Or see this region's nucleotide sequence