Experiment: LB 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07760 and AO356_07765 overlap by 4 nucleotides AO356_07765 and AO356_07770 overlap by 4 nucleotides
AO356_07760: AO356_07760 - toxin, at 1,726,111 to 1,730,679
_07760
AO356_07765: AO356_07765 - toxin, at 1,730,676 to 1,735,163
_07765
AO356_07770: AO356_07770 - toxin, at 1,735,160 to 1,737,958
_07770
Position (kb)
1730
1731
1732
1733
1734
1735
1736 Strain fitness (log2 ratio)
-2
-1
0
1 at 1729.876 kb on + strand, within AO356_07760 at 1729.877 kb on - strand, within AO356_07760 at 1729.877 kb on - strand, within AO356_07760 at 1729.877 kb on - strand, within AO356_07760 at 1729.877 kb on - strand, within AO356_07760 at 1729.907 kb on + strand, within AO356_07760 at 1729.907 kb on + strand, within AO356_07760 at 1729.907 kb on + strand, within AO356_07760 at 1729.908 kb on - strand, within AO356_07760 at 1729.915 kb on + strand, within AO356_07760 at 1729.915 kb on + strand, within AO356_07760 at 1729.916 kb on - strand, within AO356_07760 at 1729.916 kb on - strand, within AO356_07760 at 1729.916 kb on - strand, within AO356_07760 at 1729.948 kb on + strand, within AO356_07760 at 1729.949 kb on - strand, within AO356_07760 at 1729.961 kb on - strand, within AO356_07760 at 1730.008 kb on + strand, within AO356_07760 at 1730.009 kb on - strand, within AO356_07760 at 1730.066 kb on - strand, within AO356_07760 at 1730.168 kb on + strand, within AO356_07760 at 1730.169 kb on - strand, within AO356_07760 at 1730.169 kb on - strand, within AO356_07760 at 1730.296 kb on + strand at 1730.296 kb on + strand at 1730.296 kb on + strand at 1730.296 kb on + strand at 1730.297 kb on - strand at 1730.315 kb on - strand at 1730.368 kb on + strand at 1730.368 kb on + strand at 1730.533 kb on + strand at 1730.533 kb on + strand at 1730.548 kb on + strand at 1730.647 kb on + strand at 1730.647 kb on + strand at 1730.647 kb on + strand at 1730.648 kb on - strand at 1730.648 kb on - strand at 1730.648 kb on - strand at 1730.648 kb on - strand at 1730.790 kb on + strand at 1730.791 kb on - strand at 1730.850 kb on + strand at 1730.850 kb on + strand at 1730.851 kb on - strand at 1730.851 kb on - strand at 1730.943 kb on + strand at 1730.943 kb on + strand at 1730.943 kb on + strand at 1730.944 kb on - strand at 1730.944 kb on - strand at 1731.028 kb on - strand at 1731.028 kb on - strand at 1731.039 kb on + strand at 1731.039 kb on + strand at 1731.039 kb on + strand at 1731.039 kb on + strand at 1731.040 kb on - strand at 1731.040 kb on - strand at 1731.067 kb on - strand at 1731.069 kb on - strand at 1731.081 kb on + strand at 1731.081 kb on + strand at 1731.294 kb on + strand, within AO356_07765 at 1731.300 kb on + strand, within AO356_07765 at 1731.300 kb on + strand, within AO356_07765 at 1731.300 kb on + strand, within AO356_07765 at 1731.301 kb on - strand, within AO356_07765 at 1731.301 kb on - strand, within AO356_07765 at 1731.301 kb on - strand, within AO356_07765 at 1731.327 kb on + strand, within AO356_07765 at 1731.456 kb on + strand, within AO356_07765 at 1731.457 kb on - strand, within AO356_07765 at 1731.474 kb on + strand, within AO356_07765 at 1731.475 kb on - strand, within AO356_07765 at 1731.475 kb on - strand, within AO356_07765 at 1731.636 kb on + strand, within AO356_07765 at 1731.637 kb on - strand, within AO356_07765 at 1731.637 kb on - strand, within AO356_07765 at 1731.738 kb on + strand, within AO356_07765 at 1731.739 kb on - strand, within AO356_07765 at 1731.911 kb on + strand, within AO356_07765 at 1731.933 kb on + strand, within AO356_07765 at 1731.934 kb on - strand, within AO356_07765 at 1731.934 kb on - strand, within AO356_07765 at 1731.988 kb on + strand, within AO356_07765 at 1731.988 kb on + strand, within AO356_07765 at 1731.988 kb on + strand, within AO356_07765 at 1731.989 kb on - strand, within AO356_07765 at 1732.215 kb on + strand, within AO356_07765 at 1732.216 kb on - strand, within AO356_07765 at 1732.291 kb on + strand, within AO356_07765 at 1732.292 kb on - strand, within AO356_07765 at 1732.292 kb on - strand, within AO356_07765 at 1732.333 kb on + strand, within AO356_07765 at 1732.334 kb on - strand, within AO356_07765 at 1732.334 kb on - strand, within AO356_07765 at 1732.334 kb on - strand, within AO356_07765 at 1732.453 kb on - strand, within AO356_07765 at 1732.521 kb on + strand, within AO356_07765 at 1732.521 kb on + strand, within AO356_07765 at 1732.522 kb on - strand, within AO356_07765 at 1732.522 kb on - strand, within AO356_07765 at 1732.614 kb on + strand, within AO356_07765 at 1732.713 kb on + strand, within AO356_07765 at 1732.713 kb on + strand, within AO356_07765 at 1732.738 kb on - strand, within AO356_07765 at 1732.912 kb on + strand, within AO356_07765 at 1732.956 kb on + strand, within AO356_07765 at 1732.956 kb on + strand, within AO356_07765 at 1732.957 kb on - strand, within AO356_07765 at 1732.957 kb on - strand, within AO356_07765 at 1732.959 kb on + strand, within AO356_07765 at 1732.959 kb on + strand, within AO356_07765 at 1732.959 kb on + strand, within AO356_07765 at 1732.959 kb on + strand, within AO356_07765 at 1732.959 kb on + strand, within AO356_07765 at 1732.959 kb on + strand, within AO356_07765 at 1732.959 kb on + strand, within AO356_07765 at 1732.959 kb on + strand, within AO356_07765 at 1732.960 kb on - strand, within AO356_07765 at 1732.960 kb on - strand, within AO356_07765 at 1732.960 kb on - strand, within AO356_07765 at 1732.960 kb on - strand, within AO356_07765 at 1732.960 kb on - strand, within AO356_07765 at 1732.960 kb on - strand, within AO356_07765 at 1732.999 kb on + strand, within AO356_07765 at 1733.118 kb on + strand, within AO356_07765 at 1733.119 kb on - strand, within AO356_07765 at 1733.415 kb on + strand, within AO356_07765 at 1733.611 kb on - strand, within AO356_07765 at 1733.613 kb on + strand, within AO356_07765 at 1733.613 kb on + strand, within AO356_07765 at 1733.614 kb on - strand, within AO356_07765 at 1733.950 kb on + strand, within AO356_07765 at 1733.951 kb on - strand, within AO356_07765 at 1733.983 kb on + strand, within AO356_07765 at 1733.983 kb on + strand, within AO356_07765 at 1733.984 kb on - strand, within AO356_07765 at 1734.000 kb on + strand, within AO356_07765 at 1734.100 kb on - strand, within AO356_07765 at 1734.115 kb on + strand, within AO356_07765 at 1734.116 kb on - strand, within AO356_07765 at 1734.116 kb on - strand, within AO356_07765 at 1734.116 kb on - strand, within AO356_07765 at 1734.116 kb on - strand, within AO356_07765 at 1734.163 kb on - strand, within AO356_07765 at 1734.163 kb on - strand, within AO356_07765 at 1734.219 kb on + strand, within AO356_07765 at 1734.219 kb on + strand, within AO356_07765 at 1734.220 kb on - strand, within AO356_07765 at 1734.225 kb on + strand, within AO356_07765 at 1734.271 kb on + strand, within AO356_07765 at 1734.272 kb on - strand, within AO356_07765 at 1734.272 kb on - strand, within AO356_07765 at 1734.305 kb on - strand, within AO356_07765 at 1734.451 kb on - strand, within AO356_07765 at 1734.451 kb on - strand, within AO356_07765 at 1734.453 kb on + strand, within AO356_07765 at 1734.453 kb on + strand, within AO356_07765 at 1734.789 kb on + strand at 1734.789 kb on + strand at 1734.789 kb on + strand at 1734.789 kb on + strand at 1734.789 kb on + strand at 1734.789 kb on + strand at 1734.790 kb on - strand at 1734.790 kb on - strand at 1734.790 kb on - strand at 1734.790 kb on - strand at 1734.885 kb on + strand at 1734.885 kb on + strand at 1734.886 kb on - strand at 1734.886 kb on - strand at 1734.911 kb on + strand at 1734.911 kb on + strand at 1734.911 kb on + strand at 1734.912 kb on - strand at 1734.915 kb on + strand at 1734.916 kb on - strand at 1734.916 kb on - strand at 1734.916 kb on - strand at 1734.916 kb on - strand at 1734.924 kb on + strand at 1734.925 kb on - strand at 1734.925 kb on - strand at 1734.925 kb on - strand at 1734.996 kb on + strand at 1734.997 kb on - strand at 1734.997 kb on - strand at 1734.997 kb on - strand at 1735.020 kb on + strand at 1735.020 kb on + strand at 1735.020 kb on + strand at 1735.020 kb on + strand at 1735.021 kb on - strand at 1735.021 kb on - strand at 1735.021 kb on - strand at 1735.021 kb on - strand at 1735.053 kb on + strand at 1735.054 kb on - strand at 1735.054 kb on - strand at 1735.067 kb on + strand at 1735.083 kb on + strand at 1735.083 kb on + strand at 1735.238 kb on + strand at 1735.239 kb on - strand at 1735.292 kb on + strand at 1735.293 kb on - strand at 1735.293 kb on - strand at 1735.293 kb on - strand at 1735.411 kb on + strand at 1735.433 kb on + strand at 1735.433 kb on + strand at 1735.487 kb on + strand, within AO356_07770 at 1735.488 kb on - strand, within AO356_07770 at 1735.502 kb on + strand, within AO356_07770 at 1735.502 kb on + strand, within AO356_07770 at 1735.502 kb on + strand, within AO356_07770 at 1735.502 kb on + strand, within AO356_07770 at 1735.503 kb on - strand, within AO356_07770 at 1735.503 kb on - strand, within AO356_07770 at 1735.503 kb on - strand, within AO356_07770 at 1735.580 kb on + strand, within AO356_07770 at 1735.755 kb on + strand, within AO356_07770 at 1735.755 kb on + strand, within AO356_07770 at 1735.756 kb on - strand, within AO356_07770 at 1735.791 kb on - strand, within AO356_07770 at 1735.828 kb on + strand, within AO356_07770 at 1735.865 kb on + strand, within AO356_07770 at 1735.866 kb on - strand, within AO356_07770 at 1735.866 kb on - strand, within AO356_07770 at 1735.911 kb on + strand, within AO356_07770 at 1735.911 kb on + strand, within AO356_07770 at 1735.911 kb on + strand, within AO356_07770 at 1735.912 kb on - strand, within AO356_07770 at 1735.955 kb on + strand, within AO356_07770 at 1735.955 kb on + strand, within AO356_07770 at 1735.955 kb on + strand, within AO356_07770 at 1735.955 kb on + strand, within AO356_07770 at 1735.956 kb on - strand, within AO356_07770 at 1735.956 kb on - strand, within AO356_07770 at 1735.956 kb on - strand, within AO356_07770 at 1736.018 kb on + strand, within AO356_07770 at 1736.018 kb on + strand, within AO356_07770 at 1736.019 kb on - strand, within AO356_07770 at 1736.019 kb on - strand, within AO356_07770 at 1736.035 kb on + strand, within AO356_07770 at 1736.035 kb on + strand, within AO356_07770 at 1736.036 kb on - strand, within AO356_07770 at 1736.096 kb on + strand, within AO356_07770 at 1736.097 kb on - strand, within AO356_07770 at 1736.097 kb on - strand, within AO356_07770 at 1736.159 kb on - strand, within AO356_07770
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C remove 1,729,876 + AO356_07760 0.82 +1.4 1,729,877 - AO356_07760 0.82 -0.2 1,729,877 - AO356_07760 0.82 -0.5 1,729,877 - AO356_07760 0.82 +0.3 1,729,877 - AO356_07760 0.82 -0.6 1,729,907 + AO356_07760 0.83 +0.3 1,729,907 + AO356_07760 0.83 -0.2 1,729,907 + AO356_07760 0.83 +1.3 1,729,908 - AO356_07760 0.83 +0.1 1,729,915 + AO356_07760 0.83 -0.6 1,729,915 + AO356_07760 0.83 +0.3 1,729,916 - AO356_07760 0.83 +0.1 1,729,916 - AO356_07760 0.83 +0.1 1,729,916 - AO356_07760 0.83 +0.0 1,729,948 + AO356_07760 0.84 -0.7 1,729,949 - AO356_07760 0.84 +0.3 1,729,961 - AO356_07760 0.84 -0.4 1,730,008 + AO356_07760 0.85 +0.7 1,730,009 - AO356_07760 0.85 +0.6 1,730,066 - AO356_07760 0.87 +0.8 1,730,168 + AO356_07760 0.89 -0.5 1,730,169 - AO356_07760 0.89 -0.8 1,730,169 - AO356_07760 0.89 -1.3 1,730,296 + +0.2 1,730,296 + -0.6 1,730,296 + +0.4 1,730,296 + +0.3 1,730,297 - +0.5 1,730,315 - +0.1 1,730,368 + +1.5 1,730,368 + +0.1 1,730,533 + -0.3 1,730,533 + +0.2 1,730,548 + -2.2 1,730,647 + +0.1 1,730,647 + +0.8 1,730,647 + -0.7 1,730,648 - +0.1 1,730,648 - -0.0 1,730,648 - -2.7 1,730,648 - +1.0 1,730,790 + -0.6 1,730,791 - +0.1 1,730,850 + +0.4 1,730,850 + -0.0 1,730,851 - +0.3 1,730,851 - +0.5 1,730,943 + +0.4 1,730,943 + +1.0 1,730,943 + +0.6 1,730,944 - +0.2 1,730,944 - -0.1 1,731,028 - +0.2 1,731,028 - -0.1 1,731,039 + +0.5 1,731,039 + -0.0 1,731,039 + -0.4 1,731,039 + -0.8 1,731,040 - -0.7 1,731,040 - -0.2 1,731,067 - +0.8 1,731,069 - +0.1 1,731,081 + +0.2 1,731,081 + -0.2 1,731,294 + AO356_07765 0.14 +0.5 1,731,300 + AO356_07765 0.14 +0.5 1,731,300 + AO356_07765 0.14 -0.5 1,731,300 + AO356_07765 0.14 -0.8 1,731,301 - AO356_07765 0.14 +0.2 1,731,301 - AO356_07765 0.14 +0.4 1,731,301 - AO356_07765 0.14 +0.9 1,731,327 + AO356_07765 0.15 +0.1 1,731,456 + AO356_07765 0.17 -2.3 1,731,457 - AO356_07765 0.17 +0.4 1,731,474 + AO356_07765 0.18 -0.0 1,731,475 - AO356_07765 0.18 -0.0 1,731,475 - AO356_07765 0.18 +0.5 1,731,636 + AO356_07765 0.21 +0.4 1,731,637 - AO356_07765 0.21 -0.1 1,731,637 - AO356_07765 0.21 -0.9 1,731,738 + AO356_07765 0.24 +0.1 1,731,739 - AO356_07765 0.24 +0.7 1,731,911 + AO356_07765 0.28 -1.4 1,731,933 + AO356_07765 0.28 +0.1 1,731,934 - AO356_07765 0.28 -0.1 1,731,934 - AO356_07765 0.28 +0.3 1,731,988 + AO356_07765 0.29 +0.9 1,731,988 + AO356_07765 0.29 +0.7 1,731,988 + AO356_07765 0.29 +0.7 1,731,989 - AO356_07765 0.29 +0.4 1,732,215 + AO356_07765 0.34 -0.4 1,732,216 - AO356_07765 0.34 +0.2 1,732,291 + AO356_07765 0.36 +0.9 1,732,292 - AO356_07765 0.36 +0.8 1,732,292 - AO356_07765 0.36 +0.0 1,732,333 + AO356_07765 0.37 -0.4 1,732,334 - AO356_07765 0.37 -0.4 1,732,334 - AO356_07765 0.37 +0.1 1,732,334 - AO356_07765 0.37 -0.8 1,732,453 - AO356_07765 0.40 -0.9 1,732,521 + AO356_07765 0.41 +0.4 1,732,521 + AO356_07765 0.41 +0.2 1,732,522 - AO356_07765 0.41 +0.1 1,732,522 - AO356_07765 0.41 -0.4 1,732,614 + AO356_07765 0.43 +1.6 1,732,713 + AO356_07765 0.45 +0.2 1,732,713 + AO356_07765 0.45 +0.5 1,732,738 - AO356_07765 0.46 +0.2 1,732,912 + AO356_07765 0.50 -1.1 1,732,956 + AO356_07765 0.51 +0.4 1,732,956 + AO356_07765 0.51 +0.7 1,732,957 - AO356_07765 0.51 +0.5 1,732,957 - AO356_07765 0.51 +0.8 1,732,959 + AO356_07765 0.51 +0.0 1,732,959 + AO356_07765 0.51 +0.7 1,732,959 + AO356_07765 0.51 +0.3 1,732,959 + AO356_07765 0.51 +0.1 1,732,959 + AO356_07765 0.51 -0.7 1,732,959 + AO356_07765 0.51 -0.1 1,732,959 + AO356_07765 0.51 -0.3 1,732,959 + AO356_07765 0.51 +0.0 1,732,960 - AO356_07765 0.51 -0.5 1,732,960 - AO356_07765 0.51 +0.6 1,732,960 - AO356_07765 0.51 +0.7 1,732,960 - AO356_07765 0.51 +1.4 1,732,960 - AO356_07765 0.51 -0.4 1,732,960 - AO356_07765 0.51 -1.0 1,732,999 + AO356_07765 0.52 -0.3 1,733,118 + AO356_07765 0.54 -0.4 1,733,119 - AO356_07765 0.54 -0.3 1,733,415 + AO356_07765 0.61 +0.3 1,733,611 - AO356_07765 0.65 +0.5 1,733,613 + AO356_07765 0.65 -0.6 1,733,613 + AO356_07765 0.65 +0.4 1,733,614 - AO356_07765 0.65 +0.0 1,733,950 + AO356_07765 0.73 +0.3 1,733,951 - AO356_07765 0.73 +0.1 1,733,983 + AO356_07765 0.74 +0.8 1,733,983 + AO356_07765 0.74 +0.6 1,733,984 - AO356_07765 0.74 -0.3 1,734,000 + AO356_07765 0.74 +0.1 1,734,100 - AO356_07765 0.76 +0.3 1,734,115 + AO356_07765 0.77 -0.1 1,734,116 - AO356_07765 0.77 +0.8 1,734,116 - AO356_07765 0.77 -1.3 1,734,116 - AO356_07765 0.77 -0.5 1,734,116 - AO356_07765 0.77 +0.8 1,734,163 - AO356_07765 0.78 -1.4 1,734,163 - AO356_07765 0.78 -0.5 1,734,219 + AO356_07765 0.79 -0.5 1,734,219 + AO356_07765 0.79 +0.2 1,734,220 - AO356_07765 0.79 +0.8 1,734,225 + AO356_07765 0.79 +0.4 1,734,271 + AO356_07765 0.80 +0.8 1,734,272 - AO356_07765 0.80 +0.8 1,734,272 - AO356_07765 0.80 +1.2 1,734,305 - AO356_07765 0.81 +0.8 1,734,451 - AO356_07765 0.84 -0.3 1,734,451 - AO356_07765 0.84 +0.3 1,734,453 + AO356_07765 0.84 +0.4 1,734,453 + AO356_07765 0.84 +0.1 1,734,789 + -0.4 1,734,789 + +0.8 1,734,789 + -2.0 1,734,789 + -0.8 1,734,789 + -0.2 1,734,789 + -0.4 1,734,790 - -0.1 1,734,790 - -0.2 1,734,790 - +0.8 1,734,790 - +0.0 1,734,885 + -0.4 1,734,885 + -1.3 1,734,886 - +0.7 1,734,886 - +0.9 1,734,911 + +0.2 1,734,911 + -0.2 1,734,911 + +0.0 1,734,912 - -2.0 1,734,915 + -1.0 1,734,916 - +0.3 1,734,916 - -0.3 1,734,916 - +1.1 1,734,916 - +1.2 1,734,924 + +0.1 1,734,925 - +0.7 1,734,925 - +0.4 1,734,925 - -0.2 1,734,996 + +0.1 1,734,997 - +0.3 1,734,997 - -1.4 1,734,997 - +0.2 1,735,020 + +1.5 1,735,020 + +0.1 1,735,020 + -0.2 1,735,020 + +0.7 1,735,021 - +1.2 1,735,021 - +0.1 1,735,021 - +0.7 1,735,021 - +0.1 1,735,053 + -0.2 1,735,054 - +1.2 1,735,054 - -0.1 1,735,067 + +0.3 1,735,083 + -0.1 1,735,083 + -0.5 1,735,238 + -0.2 1,735,239 - -0.5 1,735,292 + +0.6 1,735,293 - +0.5 1,735,293 - -0.2 1,735,293 - +0.9 1,735,411 + +0.6 1,735,433 + -0.5 1,735,433 + -1.0 1,735,487 + AO356_07770 0.12 -0.3 1,735,488 - AO356_07770 0.12 -1.0 1,735,502 + AO356_07770 0.12 +0.8 1,735,502 + AO356_07770 0.12 -0.8 1,735,502 + AO356_07770 0.12 -1.0 1,735,502 + AO356_07770 0.12 -0.4 1,735,503 - AO356_07770 0.12 +0.2 1,735,503 - AO356_07770 0.12 +0.4 1,735,503 - AO356_07770 0.12 +0.6 1,735,580 + AO356_07770 0.15 +0.7 1,735,755 + AO356_07770 0.21 -0.1 1,735,755 + AO356_07770 0.21 +0.6 1,735,756 - AO356_07770 0.21 -0.9 1,735,791 - AO356_07770 0.23 +0.4 1,735,828 + AO356_07770 0.24 -1.2 1,735,865 + AO356_07770 0.25 -0.2 1,735,866 - AO356_07770 0.25 +0.8 1,735,866 - AO356_07770 0.25 +0.1 1,735,911 + AO356_07770 0.27 -0.2 1,735,911 + AO356_07770 0.27 +0.9 1,735,911 + AO356_07770 0.27 +0.6 1,735,912 - AO356_07770 0.27 +0.2 1,735,955 + AO356_07770 0.28 +0.3 1,735,955 + AO356_07770 0.28 +0.1 1,735,955 + AO356_07770 0.28 -0.6 1,735,955 + AO356_07770 0.28 -0.0 1,735,956 - AO356_07770 0.28 -1.1 1,735,956 - AO356_07770 0.28 +0.4 1,735,956 - AO356_07770 0.28 +0.0 1,736,018 + AO356_07770 0.31 +0.1 1,736,018 + AO356_07770 0.31 +1.1 1,736,019 - AO356_07770 0.31 +0.2 1,736,019 - AO356_07770 0.31 -0.4 1,736,035 + AO356_07770 0.31 -0.3 1,736,035 + AO356_07770 0.31 +0.2 1,736,036 - AO356_07770 0.31 -0.2 1,736,096 + AO356_07770 0.33 +1.4 1,736,097 - AO356_07770 0.33 +0.6 1,736,097 - AO356_07770 0.33 -0.3 1,736,159 - AO356_07770 0.36 +0.2
Or see this region's nucleotide sequence