Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02390

Experiment: LB 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02385 and AO356_02390 are separated by 431 nucleotidesAO356_02390 and AO356_02395 are separated by 77 nucleotides AO356_02385: AO356_02385 - aconitate hydratase, at 518,443 to 521,184 _02385 AO356_02390: AO356_02390 - CAAX protease, at 521,616 to 522,404 _02390 AO356_02395: AO356_02395 - chemotaxis protein, at 522,482 to 524,047 _02395 Position (kb) 521 522 523Strain fitness (log2 ratio) -2 -1 0 1at 520.720 kb on + strand, within AO356_02385at 520.720 kb on + strand, within AO356_02385at 520.720 kb on + strand, within AO356_02385at 520.720 kb on + strand, within AO356_02385at 520.720 kb on + strand, within AO356_02385at 520.720 kb on + strand, within AO356_02385at 520.720 kb on + strand, within AO356_02385at 520.720 kb on + strand, within AO356_02385at 520.721 kb on - strand, within AO356_02385at 520.721 kb on - strand, within AO356_02385at 520.721 kb on - strand, within AO356_02385at 520.721 kb on - strand, within AO356_02385at 520.721 kb on - strand, within AO356_02385at 520.721 kb on - strand, within AO356_02385at 520.721 kb on - strand, within AO356_02385at 520.721 kb on - strand, within AO356_02385at 520.721 kb on - strand, within AO356_02385at 520.721 kb on - strand, within AO356_02385at 520.721 kb on - strand, within AO356_02385at 520.721 kb on - strand, within AO356_02385at 520.721 kb on - strand, within AO356_02385at 520.768 kb on + strand, within AO356_02385at 520.768 kb on + strand, within AO356_02385at 520.769 kb on - strand, within AO356_02385at 520.769 kb on - strand, within AO356_02385at 520.769 kb on - strand, within AO356_02385at 520.769 kb on - strand, within AO356_02385at 520.814 kb on - strand, within AO356_02385at 521.128 kb on + strandat 521.128 kb on + strandat 521.128 kb on + strandat 521.129 kb on - strandat 521.155 kb on + strandat 521.155 kb on + strandat 521.155 kb on + strandat 521.155 kb on + strandat 521.156 kb on - strandat 521.156 kb on - strandat 521.156 kb on - strandat 521.156 kb on - strandat 521.288 kb on - strandat 521.288 kb on - strandat 521.423 kb on + strandat 521.423 kb on + strandat 521.423 kb on + strandat 521.427 kb on + strandat 521.427 kb on + strandat 521.428 kb on - strandat 521.428 kb on - strandat 521.428 kb on - strandat 521.446 kb on - strandat 521.446 kb on - strandat 521.457 kb on + strandat 521.457 kb on + strandat 521.457 kb on + strandat 521.457 kb on + strandat 521.457 kb on + strandat 521.458 kb on - strandat 521.458 kb on - strandat 521.458 kb on - strandat 521.459 kb on + strandat 521.459 kb on + strandat 521.459 kb on + strandat 521.544 kb on + strandat 521.564 kb on + strandat 521.565 kb on - strandat 521.577 kb on + strandat 521.615 kb on + strandat 521.615 kb on + strandat 521.615 kb on + strandat 521.615 kb on + strandat 521.615 kb on + strandat 521.615 kb on + strandat 521.615 kb on + strandat 521.616 kb on - strandat 521.616 kb on - strandat 521.661 kb on + strandat 521.679 kb on + strandat 521.680 kb on - strandat 521.725 kb on + strand, within AO356_02390at 521.726 kb on - strand, within AO356_02390at 521.898 kb on + strand, within AO356_02390at 521.898 kb on + strand, within AO356_02390at 521.898 kb on + strand, within AO356_02390at 521.898 kb on + strand, within AO356_02390at 521.898 kb on + strand, within AO356_02390at 521.899 kb on - strand, within AO356_02390at 521.899 kb on - strand, within AO356_02390at 521.899 kb on - strand, within AO356_02390at 521.899 kb on - strand, within AO356_02390at 521.899 kb on - strand, within AO356_02390at 521.899 kb on - strand, within AO356_02390at 521.899 kb on - strand, within AO356_02390at 522.100 kb on + strand, within AO356_02390at 522.101 kb on - strand, within AO356_02390at 522.101 kb on - strand, within AO356_02390at 522.101 kb on - strand, within AO356_02390at 522.104 kb on + strand, within AO356_02390at 522.104 kb on + strand, within AO356_02390at 522.104 kb on + strand, within AO356_02390at 522.104 kb on + strand, within AO356_02390at 522.104 kb on + strand, within AO356_02390at 522.104 kb on + strand, within AO356_02390at 522.104 kb on + strand, within AO356_02390at 522.104 kb on + strand, within AO356_02390at 522.104 kb on + strand, within AO356_02390at 522.105 kb on - strand, within AO356_02390at 522.105 kb on - strand, within AO356_02390at 522.105 kb on - strand, within AO356_02390at 522.105 kb on - strand, within AO356_02390at 522.105 kb on - strand, within AO356_02390at 522.108 kb on - strand, within AO356_02390at 522.108 kb on - strand, within AO356_02390at 522.115 kb on + strand, within AO356_02390at 522.115 kb on + strand, within AO356_02390at 522.115 kb on + strand, within AO356_02390at 522.115 kb on + strand, within AO356_02390at 522.115 kb on + strand, within AO356_02390at 522.153 kb on + strand, within AO356_02390at 522.188 kb on + strand, within AO356_02390at 522.189 kb on - strand, within AO356_02390at 522.189 kb on - strand, within AO356_02390at 522.189 kb on - strand, within AO356_02390at 522.189 kb on - strand, within AO356_02390at 522.189 kb on - strand, within AO356_02390at 522.380 kb on - strandat 522.380 kb on - strandat 522.383 kb on + strandat 522.383 kb on + strandat 522.383 kb on + strandat 522.384 kb on - strandat 522.384 kb on - strandat 522.388 kb on - strandat 522.421 kb on + strandat 522.421 kb on + strandat 522.432 kb on - strandat 522.474 kb on + strandat 522.474 kb on + strandat 522.474 kb on + strandat 522.474 kb on + strandat 522.475 kb on - strandat 522.475 kb on - strandat 522.475 kb on - strandat 522.572 kb on - strandat 522.575 kb on + strandat 522.575 kb on + strandat 522.575 kb on + strandat 522.575 kb on + strandat 522.576 kb on - strandat 522.576 kb on - strandat 522.576 kb on - strandat 522.576 kb on - strandat 522.685 kb on + strand, within AO356_02395at 522.685 kb on + strand, within AO356_02395at 522.685 kb on + strand, within AO356_02395at 522.685 kb on + strand, within AO356_02395at 522.685 kb on + strand, within AO356_02395at 522.685 kb on + strand, within AO356_02395at 522.685 kb on + strand, within AO356_02395at 522.686 kb on - strand, within AO356_02395at 522.686 kb on - strand, within AO356_02395at 522.686 kb on - strand, within AO356_02395at 522.686 kb on - strand, within AO356_02395at 522.686 kb on - strand, within AO356_02395at 522.686 kb on - strand, within AO356_02395at 522.686 kb on - strand, within AO356_02395at 522.774 kb on - strand, within AO356_02395at 522.774 kb on - strand, within AO356_02395at 522.774 kb on - strand, within AO356_02395at 522.796 kb on + strand, within AO356_02395at 522.797 kb on - strand, within AO356_02395at 522.812 kb on + strand, within AO356_02395at 522.813 kb on - strand, within AO356_02395at 522.869 kb on + strand, within AO356_02395at 522.869 kb on + strand, within AO356_02395at 522.870 kb on - strand, within AO356_02395at 523.133 kb on + strand, within AO356_02395at 523.133 kb on + strand, within AO356_02395at 523.134 kb on - strand, within AO356_02395at 523.134 kb on - strand, within AO356_02395at 523.134 kb on - strand, within AO356_02395

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C
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520,720 + AO356_02385 0.83 -1.1
520,720 + AO356_02385 0.83 +0.1
520,720 + AO356_02385 0.83 -0.4
520,720 + AO356_02385 0.83 -0.3
520,720 + AO356_02385 0.83 +1.0
520,720 + AO356_02385 0.83 +0.8
520,720 + AO356_02385 0.83 -0.0
520,720 + AO356_02385 0.83 -0.2
520,721 - AO356_02385 0.83 +1.1
520,721 - AO356_02385 0.83 -1.0
520,721 - AO356_02385 0.83 -1.0
520,721 - AO356_02385 0.83 +1.3
520,721 - AO356_02385 0.83 -2.1
520,721 - AO356_02385 0.83 -0.8
520,721 - AO356_02385 0.83 +0.1
520,721 - AO356_02385 0.83 +0.2
520,721 - AO356_02385 0.83 +0.5
520,721 - AO356_02385 0.83 -0.9
520,721 - AO356_02385 0.83 -0.1
520,721 - AO356_02385 0.83 +0.5
520,721 - AO356_02385 0.83 -0.5
520,768 + AO356_02385 0.85 +0.5
520,768 + AO356_02385 0.85 +0.6
520,769 - AO356_02385 0.85 -0.4
520,769 - AO356_02385 0.85 -0.2
520,769 - AO356_02385 0.85 +0.6
520,769 - AO356_02385 0.85 -0.2
520,814 - AO356_02385 0.86 +0.8
521,128 + +0.4
521,128 + -0.3
521,128 + -0.3
521,129 - +0.2
521,155 + +0.2
521,155 + -1.3
521,155 + +1.2
521,155 + +0.3
521,156 - -0.1
521,156 - +0.4
521,156 - +0.9
521,156 - +0.8
521,288 - +0.7
521,288 - -0.1
521,423 + +0.1
521,423 + +0.5
521,423 + +0.3
521,427 + +0.5
521,427 + +0.2
521,428 - -0.5
521,428 - +0.2
521,428 - -0.4
521,446 - +0.4
521,446 - +0.7
521,457 + +0.5
521,457 + +0.4
521,457 + -0.6
521,457 + +0.5
521,457 + +0.3
521,458 - +1.5
521,458 - +0.8
521,458 - -0.1
521,459 + -0.2
521,459 + -0.3
521,459 + +1.0
521,544 + +0.2
521,564 + -0.3
521,565 - +0.5
521,577 + +0.1
521,615 + +0.8
521,615 + +0.8
521,615 + -0.0
521,615 + -0.1
521,615 + +1.3
521,615 + +0.6
521,615 + +0.1
521,616 - -0.2
521,616 - -0.1
521,661 + +0.4
521,679 + -0.4
521,680 - +0.5
521,725 + AO356_02390 0.14 +0.2
521,726 - AO356_02390 0.14 +0.8
521,898 + AO356_02390 0.36 +0.2
521,898 + AO356_02390 0.36 +0.2
521,898 + AO356_02390 0.36 +0.1
521,898 + AO356_02390 0.36 +0.5
521,898 + AO356_02390 0.36 -0.0
521,899 - AO356_02390 0.36 +0.7
521,899 - AO356_02390 0.36 +0.4
521,899 - AO356_02390 0.36 -1.3
521,899 - AO356_02390 0.36 +1.6
521,899 - AO356_02390 0.36 -0.2
521,899 - AO356_02390 0.36 +0.7
521,899 - AO356_02390 0.36 -0.3
522,100 + AO356_02390 0.61 -0.0
522,101 - AO356_02390 0.61 +0.5
522,101 - AO356_02390 0.61 -0.2
522,101 - AO356_02390 0.61 -0.5
522,104 + AO356_02390 0.62 -0.7
522,104 + AO356_02390 0.62 +0.2
522,104 + AO356_02390 0.62 -1.5
522,104 + AO356_02390 0.62 +0.2
522,104 + AO356_02390 0.62 -0.6
522,104 + AO356_02390 0.62 +0.8
522,104 + AO356_02390 0.62 +0.8
522,104 + AO356_02390 0.62 +0.1
522,104 + AO356_02390 0.62 +0.3
522,105 - AO356_02390 0.62 +0.1
522,105 - AO356_02390 0.62 +0.5
522,105 - AO356_02390 0.62 -0.1
522,105 - AO356_02390 0.62 +1.0
522,105 - AO356_02390 0.62 +0.2
522,108 - AO356_02390 0.62 +1.3
522,108 - AO356_02390 0.62 -1.1
522,115 + AO356_02390 0.63 +0.3
522,115 + AO356_02390 0.63 -0.1
522,115 + AO356_02390 0.63 -0.2
522,115 + AO356_02390 0.63 +0.4
522,115 + AO356_02390 0.63 +0.1
522,153 + AO356_02390 0.68 +0.1
522,188 + AO356_02390 0.72 +0.1
522,189 - AO356_02390 0.73 +1.0
522,189 - AO356_02390 0.73 +1.1
522,189 - AO356_02390 0.73 +1.4
522,189 - AO356_02390 0.73 +0.6
522,189 - AO356_02390 0.73 +1.7
522,380 - +0.6
522,380 - +0.7
522,383 + -0.4
522,383 + +0.7
522,383 + +0.6
522,384 - +0.5
522,384 - +1.1
522,388 - +0.1
522,421 + -0.4
522,421 + -0.5
522,432 - +1.1
522,474 + +1.6
522,474 + +0.2
522,474 + -2.1
522,474 + +0.2
522,475 - +0.7
522,475 - -0.3
522,475 - +0.6
522,572 - +0.9
522,575 + +0.4
522,575 + -1.4
522,575 + +0.0
522,575 + +0.2
522,576 - -0.5
522,576 - -0.1
522,576 - +0.7
522,576 - -0.6
522,685 + AO356_02395 0.13 -0.1
522,685 + AO356_02395 0.13 -0.5
522,685 + AO356_02395 0.13 -0.0
522,685 + AO356_02395 0.13 +0.4
522,685 + AO356_02395 0.13 +0.1
522,685 + AO356_02395 0.13 +0.4
522,685 + AO356_02395 0.13 -0.3
522,686 - AO356_02395 0.13 -1.1
522,686 - AO356_02395 0.13 +0.8
522,686 - AO356_02395 0.13 -0.8
522,686 - AO356_02395 0.13 +0.2
522,686 - AO356_02395 0.13 +0.4
522,686 - AO356_02395 0.13 +0.1
522,686 - AO356_02395 0.13 -2.1
522,774 - AO356_02395 0.19 -0.1
522,774 - AO356_02395 0.19 -0.6
522,774 - AO356_02395 0.19 +0.3
522,796 + AO356_02395 0.20 +1.3
522,797 - AO356_02395 0.20 -0.6
522,812 + AO356_02395 0.21 -1.3
522,813 - AO356_02395 0.21 +0.6
522,869 + AO356_02395 0.25 -0.1
522,869 + AO356_02395 0.25 +0.8
522,870 - AO356_02395 0.25 +0.5
523,133 + AO356_02395 0.42 +0.6
523,133 + AO356_02395 0.42 +0.1
523,134 - AO356_02395 0.42 +0.3
523,134 - AO356_02395 0.42 -0.5
523,134 - AO356_02395 0.42 +0.2

Or see this region's nucleotide sequence